{"id":"https://openalex.org/W2113457330","doi":"https://doi.org/10.1186/2041-1480-4-12","title":"BioUSeR: a semantic-based tool for retrieving Life Science web resources driven by text-rich user requirements","display_name":"BioUSeR: a semantic-based tool for retrieving Life Science web resources driven by text-rich user requirements","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2113457330","doi":"https://doi.org/10.1186/2041-1480-4-12","mag":"2113457330","pmid":"https://pubmed.ncbi.nlm.nih.gov/23635042"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-4-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-12","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-12","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-12","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103173430","display_name":"Mar\u00eda P\u00e9rez","orcid":"https://orcid.org/0000-0001-8611-3396"},"institutions":[{"id":"https://openalex.org/I10902133","display_name":"Universitat Jaume I","ror":"https://ror.org/02ws1xc11","country_code":"ES","type":"education","lineage":["https://openalex.org/I10902133"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Mar\u00eda P\u00e9rez","raw_affiliation_strings":["Department of Computer Science and Engineering, Universitat Jaume I, Castell\u00f3n, Spain. mcatalan@uji.es","Department of Computer Science and Engineering, Universitat Jaume I, Castell\u00f3n, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Universitat Jaume I, Castell\u00f3n, Spain. mcatalan@uji.es","institution_ids":["https://openalex.org/I10902133"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Universitat Jaume I, Castell\u00f3n, Spain","institution_ids":["https://openalex.org/I10902133"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063246198","display_name":"Rafael Berlanga","orcid":"https://orcid.org/0000-0002-9155-269X"},"institutions":[{"id":"https://openalex.org/I10902133","display_name":"Universitat Jaume I","ror":"https://ror.org/02ws1xc11","country_code":"ES","type":"education","lineage":["https://openalex.org/I10902133"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rafael Berlanga","raw_affiliation_strings":["Department of Computer Languages and Systems, Universitat Jaume I, Castell\u00f3n, Spain","Department of Computer Languages and Systems, Universitat Jaume I, Castellon, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Languages and Systems, Universitat Jaume I, Castell\u00f3n, Spain","institution_ids":["https://openalex.org/I10902133"]},{"raw_affiliation_string":"Department of Computer Languages and Systems, Universitat Jaume I, Castellon, Spain","institution_ids":["https://openalex.org/I10902133"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046070799","display_name":"Ismael Sanz","orcid":"https://orcid.org/0000-0001-9670-5627"},"institutions":[{"id":"https://openalex.org/I10902133","display_name":"Universitat Jaume I","ror":"https://ror.org/02ws1xc11","country_code":"ES","type":"education","lineage":["https://openalex.org/I10902133"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ismael Sanz","raw_affiliation_strings":["Department of Computer Science and Engineering, Universitat Jaume I, Castell\u00f3n, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Universitat Jaume I, Castell\u00f3n, Spain","institution_ids":["https://openalex.org/I10902133"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006863622","display_name":"Mar\u00eda Jos\u00e9 Aramburu","orcid":"https://orcid.org/0000-0002-8026-8351"},"institutions":[{"id":"https://openalex.org/I10902133","display_name":"Universitat Jaume I","ror":"https://ror.org/02ws1xc11","country_code":"ES","type":"education","lineage":["https://openalex.org/I10902133"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mar\u00eda Aramburu","raw_affiliation_strings":["Department of Computer Science and Engineering, Universitat Jaume I, Castell\u00f3n, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Universitat Jaume I, Castell\u00f3n, Spain","institution_ids":["https://openalex.org/I10902133"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5103173430"],"corresponding_institution_ids":["https://openalex.org/I10902133"],"apc_list":{"value":1590,"currency":"USD","value_usd":1590},"apc_paid":{"value":1590,"currency":"USD","value_usd":1590},"fwci":0.2749,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.59897757,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"4","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9068999886512756,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9068999886512756,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.014800000004470348,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.014600000344216824,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8814428448677063},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7198863625526428},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6073256731033325},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5619307160377502},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5423373579978943},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.518225908279419},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5139510035514832},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.5114001631736755},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.48945534229278564},{"id":"https://openalex.org/keywords/semantic-grid","display_name":"Semantic grid","score":0.4839368462562561},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4658649265766144},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.46558845043182373},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.44798994064331055},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4446580410003662}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8814428448677063},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7198863625526428},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6073256731033325},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5619307160377502},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5423373579978943},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.518225908279419},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5139510035514832},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.5114001631736755},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.48945534229278564},{"id":"https://openalex.org/C103692084","wikidata":"https://www.wikidata.org/wiki/Q1765824","display_name":"Semantic grid","level":3,"score":0.4839368462562561},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4658649265766144},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.46558845043182373},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.44798994064331055},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4446580410003662},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/2041-1480-4-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-12","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-12","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:23635042","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23635042","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":"Journal Article"},{"id":"pmh:oai:dnet:repositoriun::cc3cca244d82df27f0669cad0794ae91","is_oa":true,"landing_page_url":"http://hdl.handle.net/10234/87889","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2695819","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3698192","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-4-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-12","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-12","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310211","display_name":"Fundaci\u00f3n Caja Castell\u00f3n","ror":null},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320322926","display_name":"Universitat Jaume I","ror":"https://ror.org/02ws1xc11"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113457330.pdf","grobid_xml":"https://content.openalex.org/works/W2113457330.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W655855333","https://openalex.org/W1524500851","https://openalex.org/W1578304052","https://openalex.org/W1617708793","https://openalex.org/W1979566122","https://openalex.org/W1984646150","https://openalex.org/W1996902131","https://openalex.org/W2002437228","https://openalex.org/W2040998119","https://openalex.org/W2064148497","https://openalex.org/W2068918174","https://openalex.org/W2083195256","https://openalex.org/W2084662183","https://openalex.org/W2087187521","https://openalex.org/W2090656662","https://openalex.org/W2097489252","https://openalex.org/W2099100406","https://openalex.org/W2100157745","https://openalex.org/W2127770193","https://openalex.org/W2134150392","https://openalex.org/W2137653635","https://openalex.org/W2138608730","https://openalex.org/W2140157849","https://openalex.org/W2141132558","https://openalex.org/W2142110984","https://openalex.org/W2145882012","https://openalex.org/W2157437711","https://openalex.org/W2160943260","https://openalex.org/W2162094394","https://openalex.org/W2162832420","https://openalex.org/W2172143128","https://openalex.org/W2593717846","https://openalex.org/W2619270426"],"related_works":["https://openalex.org/W2163712085","https://openalex.org/W126242516","https://openalex.org/W2134715673","https://openalex.org/W2467098852","https://openalex.org/W4232946860","https://openalex.org/W4245995334","https://openalex.org/W2059508983","https://openalex.org/W1605808839","https://openalex.org/W1546139022","https://openalex.org/W2119388581"],"abstract_inverted_index":{"BACKGROUND:":[0],"Open":[1],"metadata":[2],"registries":[3,21,132],"are":[4,25],"a":[5,66,91,95],"fundamental":[6],"tool":[7,68],"for":[8,57],"researchers":[9],"in":[10,51,60,76,103],"the":[11,35,85,112,127,130],"Life":[12,61,72],"Sciences":[13,73],"trying":[14],"to":[15,53,109,116,146],"locate":[16],"resources.":[17],"While":[18],"most":[19,33],"current":[20,131],"assume":[22],"that":[23,32],"resources":[24,74,119,155],"annotated":[26],"with":[27],"well-structured":[28],"metadata,":[29],"evidence":[30],"shows":[31],"of":[34,40,90,97,99,129,138,144,154],"resource":[36,58],"annotations":[37],"simply":[38],"consists":[39],"informal":[41],"free":[42,77,104],"text.":[43,78,105],"This":[44],"reality":[45],"must":[46],"be":[47],"taken":[48],"into":[49],"account":[50],"order":[52],"develop":[54],"effective":[55],"techniques":[56],"discovery":[59],"Sciences.":[62],"RESULTS:":[63],"BioUSeR":[64,106,125],"is":[65,82,107],"semantic-based":[67],"aimed":[69],"at":[70],"retrieving":[71],"described":[75],"The":[79],"retrieval":[80,151],"process":[81],"driven":[83],"by":[84,120],"user":[86,139,158],"requirements,":[87],"which":[88],"consist":[89],"target":[92],"task":[93],"and":[94,152],"set":[96],"facets":[98],"interest,":[100],"both":[101],"expressed":[102],"able":[108],"effectively":[110],"exploit":[111],"available":[113],"textual":[114,148],"descriptions":[115],"find":[117],"relevant":[118],"using":[121],"semantic-aware":[122],"techniques.":[123],"CONCLUSIONS:":[124],"overcomes":[126],"limitations":[128],"thanks":[133],"to:":[134],"(i)":[135],"rich":[136],"specification":[137],"information":[140],"needs,":[141],"(ii)":[142],"use":[143],"semantics":[145],"manage":[147],"descriptions,":[149],"(iii)":[150],"ranking":[153],"based":[156],"on":[157],"requirements.":[159]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
