{"id":"https://openalex.org/W2164053336","doi":"https://doi.org/10.1186/2041-1480-3-8","title":"Analysing Syntactic Regularities and Irregularities in SNOMED-CT","display_name":"Analysing Syntactic Regularities and Irregularities in SNOMED-CT","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2164053336","doi":"https://doi.org/10.1186/2041-1480-3-8","mag":"2164053336","pmid":"https://pubmed.ncbi.nlm.nih.gov/23244503"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-3-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-8","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020503762","display_name":"Eleni Mikroyannidi","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Eleni Mikroyannidi","raw_affiliation_strings":["School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL UK. mikroyannidi@cs.manchester.ac.uk","School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL UK. mikroyannidi@cs.manchester.ac.uk","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049799218","display_name":"Robert Stevens","orcid":"https://orcid.org/0000-0002-6038-9025"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Stevens","raw_affiliation_strings":["School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046989109","display_name":"Luigi Iannone","orcid":"https://orcid.org/0000-0002-4109-3739"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Luigi Iannone","raw_affiliation_strings":["School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105353586","display_name":"Alan Rector","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alan Rector","raw_affiliation_strings":["School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5020503762"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":0.3682,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.60109564,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"3","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8546000123023987,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8546000123023987,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.06480000168085098,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12881","display_name":"linguistics and terminology studies","score":0.018400000408291817,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.8982541561126709},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7836340665817261},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.580958366394043},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4780029356479645},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4066818058490753},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.22679486870765686},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.16193145513534546}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.8982541561126709},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7836340665817261},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.580958366394043},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4780029356479645},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4066818058490753},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.22679486870765686},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.16193145513534546},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1186/2041-1480-3-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-8","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:23244503","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23244503","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/241d23ae-d6ba-4ccb-b5fd-83d3da33b57b","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/241d23ae-d6ba-4ccb-b5fd-83d3da33b57b","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mikroyannidi, E, Stevens, R, Iannone, L & Rector, A 2012, 'Analysing Syntactic Regularities and Irregularities in {SNOMED-CT}', Biomedical Semantics, vol. 3, no. 1. https://doi.org/10.1186/2041-1480-3-8","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/241d23ae-d6ba-4ccb-b5fd-83d3da33b57b","is_oa":true,"landing_page_url":"http://www.jbiomedsem.com/content/3/1/8","pdf_url":"https://link.springer.com/content/pdf/10.1186/2041-1480-3-8.pdf","source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mikroyannidi, E, Stevens, R, Iannone, L & Rector, A 2012, 'Analysing Syntactic Regularities and Irregularities in {SNOMED-CT}', Biomedical Semantics, vol. 3, no. 1. https://doi.org/10.1186/2041-1480-3-8","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.368.2025","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.368.2025","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.jbiomedsem.com/content/pdf/2041-1480-3-8.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2642593","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3637289","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3637289","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3637289","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-3-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-8","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2164053336.pdf","grobid_xml":"https://content.openalex.org/works/W2164053336.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W62327733","https://openalex.org/W90548265","https://openalex.org/W259936663","https://openalex.org/W1034019924","https://openalex.org/W1482585805","https://openalex.org/W1493568378","https://openalex.org/W1565377632","https://openalex.org/W1597785952","https://openalex.org/W1598707686","https://openalex.org/W1838034317","https://openalex.org/W1849487635","https://openalex.org/W1903828735","https://openalex.org/W1964298951","https://openalex.org/W1992419399","https://openalex.org/W2005564477","https://openalex.org/W2036614464","https://openalex.org/W2078022480","https://openalex.org/W2108414747","https://openalex.org/W2118801479","https://openalex.org/W2125029697","https://openalex.org/W2127480960","https://openalex.org/W2172304783","https://openalex.org/W2248098515","https://openalex.org/W2399721281","https://openalex.org/W2963945573"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2039735462","https://openalex.org/W2951665393","https://openalex.org/W4297803142","https://openalex.org/W2770499767","https://openalex.org/W2295806952","https://openalex.org/W2293521960","https://openalex.org/W172101468","https://openalex.org/W131864321","https://openalex.org/W3204019825"],"abstract_inverted_index":{"MOTIVATION:":[0],"In":[1,347],"this":[2],"paper":[3],"we":[4],"demonstrate":[5,227],"the":[6,20,23,59,64,68,92,184,191,231,283,287,296,307,337,348,351,356,365,368,403,421],"usage":[7,229],"of":[8,19,25,77,98,101,127,144,160,186,193,201,233,273,278,286,295,318,323,340,364],"RIO;":[9],"a":[10,43,107,124,142,158,238,303,315,390,418],"framework":[11,170],"for":[12,34,400,423],"detecting":[13],"syntactic":[14],"regularities":[15,128,172,279,377],"using":[16],"cluster":[17],"analysis":[18,290],"entities":[21,102,203],"in":[22,30,37,95,131,176,183,271,282,306,355,367,382,420,426],"signature":[24],"an":[26,84,177,187,220,383],"ontology.":[27,188,288,384],"Quality":[28],"assurance":[29,79,339,425],"ontologies":[31],"is":[32,49,80,91,157,372,389],"vital":[33],"their":[35,207,274],"use":[36,192],"real":[38],"applications,":[39],"as":[40,42,248,250,327],"well":[41,83,249],"complex":[44],"and":[45,56,63,113,129,138,166,204,217,245,252,263,276,280,378,394,398],"difficult":[46],"task.":[47],"It":[48,371],"also":[50],"important":[51],"to":[52,71,110,149,173,198,209,223,301,313,374,392],"have":[53,314,407],"such":[54,146,161,396],"methods":[55,165],"tools":[57],"when":[58],"ontology":[60,69,85,93,136,163],"lacks":[61],"documentation":[62],"user":[65],"cannot":[66],"consult":[67],"developers":[70],"understand":[72],"its":[73,228],"construction.":[74],"One":[75],"aspect":[76],"quality":[78,139,338,424],"checking":[81],"how":[82,96],"complies":[86],"with":[87,141,230,333],"established":[88],"'coding":[89],"standards';":[90],"regular":[94],"descriptions":[97],"different":[99],"types":[100,275],"are":[103,114,120,258,269],"axiomatised?":[104],"Is":[105],"there":[106,115,156],"similar":[108,202],"way":[109],"describe":[111,190],"them":[112,332],"any":[116],"corner":[117],"cases":[118],"that":[119,147,242,292,387,409],"not":[121],"covered":[122],"by":[123,330,361,402],"pattern?":[125],"Detection":[126],"irregularities":[130,281,381],"axiom":[132],"patterns":[133,222,353],"should":[134],"provide":[135],"authors":[137],"inspectors":[140],"level":[143],"abstraction":[145,213],"compliance":[148],"coding":[150],"standards":[151],"can":[152,416],"be":[153,174,224],"automated.":[154],"However,":[155],"lack":[159],"reverse":[162],"engineering":[164],"tools.":[167],"RESULTS:":[168],"RIO":[169,388],"allows":[171,214],"detected":[175],"OWL":[178],"ontology,":[179],"i.e.":[180],"repetitive":[181],"structures":[182],"axioms":[185,208,285,366],"We":[189,226,385,406],"standard":[194,410],"machine":[195,414],"learning":[196,415],"approaches":[197],"make":[199],"clusters":[200],"generalise":[205],"over":[206],"find":[210,393],"regularities.":[211],"This":[212],"matches":[215,397],"to,":[216],"deviations":[218],"from,":[219],"ontology's":[221],"shown.":[225],"inspection":[232],"three":[234],"modules":[235,294],"from":[236,413],"SNOMED-CT,":[237],"large":[239],"medical":[240],"terminology,":[241,297],"cover":[243],"\"Present\"":[244],"\"Absent\"":[246],"findings,":[247],"\"Chronic\"":[251],"\"Acute\"":[253],"findings.":[254],"The":[255,289],"module":[256],"sizes":[257],"5":[259],"065,":[260],"20":[261],"688":[262],"19":[264],"812":[265],"asserted":[266,284],"axioms.":[267],"They":[268],"analysed":[270],"terms":[272],"number":[277,317],"showed":[291],"some":[293],"which":[298],"were":[299,311,325,343,359],"expected":[300,352],"instantiate":[302],"pattern":[304],"described":[305,354],"SNOMED-CT":[308],"technical":[309,357],"guide,":[310],"found":[312],"high":[316],"regularity":[319],"deviations.":[320],"A":[321],"subset":[322],"these":[324],"categorised":[326],"\"design":[328],"defects\"":[329],"verifying":[331],"past":[334],"work":[335],"on":[336],"SNOMED-CT.":[341],"These":[342],"mainly":[344],"incomplete":[345],"descriptions.":[346],"worst":[349],"case,":[350],"guide":[358],"followed":[360],"only":[362],"5%":[363],"module.":[369],"CONCLUSION:":[370],"possible":[373],"automatically":[375],"detect":[376],"then":[379],"inspect":[380],"argue":[386],"tool":[391,419],"report":[395],"mismatches,":[399],"evaluations":[401],"domain":[404],"experts.":[405],"demonstrated":[408],"clustering":[411],"techniques":[412],"offer":[417],"drive":[422],"ontologies.":[427],"AVAILABILITY:":[428],"http://riotool.sourceforge.net/":[429],"CONTACT:":[430],"http://eleni.mikroyannidi@manchester.ac.uk,":[431],"http://robert.stevens@manchehster.ac.uk.":[432]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
