{"id":"https://openalex.org/W2138768461","doi":"https://doi.org/10.1186/2041-1480-3-15","title":"Extraction of potential adverse drug events from medical case reports","display_name":"Extraction of potential adverse drug events from medical case reports","publication_year":2012,"publication_date":"2012-12-01","ids":{"openalex":"https://openalex.org/W2138768461","doi":"https://doi.org/10.1186/2041-1480-3-15","mag":"2138768461","pmid":"https://pubmed.ncbi.nlm.nih.gov/23256479"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-3-15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-15","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-15","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-15","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035060987","display_name":"Harsha Gurulingappa","orcid":"https://orcid.org/0009-0004-8593-7704"},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Harsha Gurulingappa","raw_affiliation_strings":[", Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt 64293, Germany. luca.toldo@merckgroup.com",", Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt 64293, Germany"],"affiliations":[{"raw_affiliation_string":", Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt 64293, Germany. luca.toldo@merckgroup.com","institution_ids":[]},{"raw_affiliation_string":", Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt 64293, Germany","institution_ids":["https://openalex.org/I164928964"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098330631","display_name":"Abdul Mateen\u2010Rajpu","orcid":null},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Abdul Mateen\u2010Rajpu","raw_affiliation_strings":["Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt, 64293, Germany",", Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt 64293, Germany"],"affiliations":[{"raw_affiliation_string":"Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt, 64293, Germany","institution_ids":["https://openalex.org/I164928964"]},{"raw_affiliation_string":", Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt 64293, Germany","institution_ids":["https://openalex.org/I164928964"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082933983","display_name":"Luca Toldo","orcid":"https://orcid.org/0000-0003-2027-5717"},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Luca Toldo","raw_affiliation_strings":["Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt, 64293, Germany",", Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt 64293, Germany"],"affiliations":[{"raw_affiliation_string":"Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt, 64293, Germany","institution_ids":["https://openalex.org/I164928964"]},{"raw_affiliation_string":", Merck KGaA, Frankfurterstra\u00dfe 250, Darmstadt 64293, Germany","institution_ids":["https://openalex.org/I164928964"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5035060987"],"corresponding_institution_ids":["https://openalex.org/I164928964"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":6.3076,"has_fulltext":true,"cited_by_count":209,"citation_normalized_percentile":{"value":0.97512613,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"3","issue":"1","first_page":"15","last_page":"15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7262349128723145},{"id":"https://openalex.org/keywords/pharmacovigilance","display_name":"Pharmacovigilance","score":0.712959349155426},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.5605813264846802},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.507670521736145},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.500739336013794},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4679003953933716},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.45839154720306396},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4285507798194885},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3136275112628937},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.31293362379074097},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.1298190951347351}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7262349128723145},{"id":"https://openalex.org/C57658597","wikidata":"https://www.wikidata.org/wiki/Q1550789","display_name":"Pharmacovigilance","level":3,"score":0.712959349155426},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.5605813264846802},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.507670521736145},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.500739336013794},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4679003953933716},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.45839154720306396},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4285507798194885},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3136275112628937},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.31293362379074097},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.1298190951347351},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/2041-1480-3-15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-15","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-15","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:23256479","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23256479","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:europepmc.org:2598055","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3599676","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-3-15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-15","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-15","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138768461.pdf","grobid_xml":"https://content.openalex.org/works/W2138768461.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W49950905","https://openalex.org/W158623955","https://openalex.org/W1034019924","https://openalex.org/W1965446264","https://openalex.org/W1965767365","https://openalex.org/W1981492645","https://openalex.org/W1987581851","https://openalex.org/W2040558422","https://openalex.org/W2048059249","https://openalex.org/W2051840895","https://openalex.org/W2052217781","https://openalex.org/W2068948573","https://openalex.org/W2101013878","https://openalex.org/W2104088534","https://openalex.org/W2110444463","https://openalex.org/W2129767020","https://openalex.org/W2133499793","https://openalex.org/W2137052779","https://openalex.org/W2138745909","https://openalex.org/W2139212933","https://openalex.org/W2141869602","https://openalex.org/W2142572836","https://openalex.org/W2159666011","https://openalex.org/W2159985898","https://openalex.org/W2160194473","https://openalex.org/W2404243441","https://openalex.org/W2419265482","https://openalex.org/W2781804600","https://openalex.org/W3193477162"],"related_works":["https://openalex.org/W2125179413","https://openalex.org/W2719570687","https://openalex.org/W3020922338","https://openalex.org/W2911853378","https://openalex.org/W2975520804","https://openalex.org/W3018781222","https://openalex.org/W3016427719","https://openalex.org/W3045979088","https://openalex.org/W2158480666","https://openalex.org/W2056799348"],"abstract_inverted_index":{":":[0],"The":[1],"sheer":[2],"amount":[3],"of":[4,33,60,70,97],"information":[5,34],"about":[6,35],"potential":[7,36,71,114,138],"adverse":[8,37,72,115,139],"drug":[9,20,38,73,116,121,132,140],"events":[10,39,117,141],"published":[11],"in":[12,120],"medical":[13],"case":[14,78],"reports":[15],"pose":[16],"major":[17],"challenges":[18],"for":[19,29,65,131],"safety":[21,133],"experts":[22],"to":[23,45,135],"perform":[24],"timely":[25],"monitoring.":[26],"Efficient":[27],"strategies":[28],"identification":[30,67],"and":[31,49,68],"extraction":[32,69,109],"from":[40,76,110],"free-text":[41,144],"resources":[42],"are":[43],"needed":[44],"support":[46],"pharmacovigilance":[47],"research":[48],"pharmaceutical":[50],"decision":[51],"making.":[52],"Therefore,":[53],"this":[54,124],"work":[55],"focusses":[56],"on":[57,82],"the":[58,66,98],"adaptation":[59],"a":[61,83,127],"machine":[62],"learning-based":[63],"system":[64,99],"event":[74],"relations":[75],"MEDLINE":[77,111],"reports.":[79],"It":[80],"relies":[81],"high":[84],"quality":[85],"corpus":[86],"that":[87],"was":[88],"manually":[89],"annotated":[90],"using":[91],"an":[92],"ontology-driven":[93],"methodology.":[94],"Qualitative":[95],"evaluation":[96],"showed":[100],"robust":[101],"results.":[102],"An":[103],"experiment":[104],"with":[105],"large":[106],"scale":[107],"relation":[108],"delivered":[112],"under-identified":[113],"not":[118],"reported":[119],"monographs.":[122],"Overall,":[123],"approach":[125],"provides":[126],"scalable":[128],"auto-assistance":[129],"platform":[130],"professionals":[134],"automatically":[136],"collect":[137],"communicated":[142],"as":[143],"data.":[145]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":27},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":19},{"year":2015,"cited_by_count":26},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
