{"id":"https://openalex.org/W2165852682","doi":"https://doi.org/10.1186/2041-1480-3-12","title":"A 2012 Workshop: Vaccine and Drug Ontology in the Study of Mechanism and Effect (VDOSME 2012)","display_name":"A 2012 Workshop: Vaccine and Drug Ontology in the Study of Mechanism and Effect (VDOSME 2012)","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2165852682","doi":"https://doi.org/10.1186/2041-1480-3-12","mag":"2165852682","pmid":"https://pubmed.ncbi.nlm.nih.gov/23249650"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-3-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-12","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-12","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-12","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024742201","display_name":"Yongqun He","orcid":"https://orcid.org/0000-0001-9189-9661"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yongqun He","raw_affiliation_strings":["Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, and Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA. yongqunh@med.umich.edu","Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA"],"affiliations":[{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, and Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA. yongqunh@med.umich.edu","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082933983","display_name":"Luca Toldo","orcid":"https://orcid.org/0000-0003-2027-5717"},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Luca Toldo","raw_affiliation_strings":["Merck KGaA, Frankfurter Stra\u00dfe 250, Darmstadt, 64293, Germany"],"affiliations":[{"raw_affiliation_string":"Merck KGaA, Frankfurter Stra\u00dfe 250, Darmstadt, 64293, Germany","institution_ids":["https://openalex.org/I164928964"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087346345","display_name":"Gully Burns","orcid":"https://orcid.org/0000-0003-1493-865X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gully Burns","raw_affiliation_strings":["Information Sciences Institute, 4676 Admiralty Way, Suite 1001, Marina del Rey, CA, 90292, USA"],"affiliations":[{"raw_affiliation_string":"Information Sciences Institute, 4676 Admiralty Way, Suite 1001, Marina del Rey, CA, 90292, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076058129","display_name":"Cui Tao","orcid":"https://orcid.org/0000-0002-4267-1924"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cui Tao","raw_affiliation_strings":["Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"last","author":{"id":null,"display_name":"Darrell R Abernethy","orcid":null},"institutions":[{"id":"https://openalex.org/I1320320070","display_name":"United States Food and Drug Administration","ror":"https://ror.org/034xvzb47","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Darrell R Abernethy","raw_affiliation_strings":["U.S. Food and Drug Administration (FDA), Johns Hopkins School of Medicine, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"U.S. Food and Drug Administration (FDA), Johns Hopkins School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I1320320070"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5024742201"],"corresponding_institution_ids":["https://openalex.org/I27837315"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.2685,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.59392351,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"3","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9592999815940857,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9501000046730042,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6917766332626343},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.6369547247886658},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.50874263048172},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46558159589767456},{"id":"https://openalex.org/keywords/pharmacovigilance","display_name":"Pharmacovigilance","score":0.4563160836696625},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.43339216709136963},{"id":"https://openalex.org/keywords/meddra","display_name":"MedDRA","score":0.4259752631187439},{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.42398083209991455},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.41325515508651733},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.22020059823989868}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6917766332626343},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.6369547247886658},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.50874263048172},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46558159589767456},{"id":"https://openalex.org/C57658597","wikidata":"https://www.wikidata.org/wiki/Q1550789","display_name":"Pharmacovigilance","level":3,"score":0.4563160836696625},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.43339216709136963},{"id":"https://openalex.org/C199475168","wikidata":"https://www.wikidata.org/wiki/Q1539689","display_name":"MedDRA","level":4,"score":0.4259752631187439},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.42398083209991455},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.41325515508651733},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.22020059823989868},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/2041-1480-3-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-12","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-12","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:23249650","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23249650","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f5d91e8e88be4173956f6c07f15e8251","is_oa":true,"landing_page_url":"https://doaj.org/article/f5d91e8e88be4173956f6c07f15e8251","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 3, Iss 1, p 12 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2555298","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3554582","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-3-12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-12","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-12","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320325582","display_name":"Karl-Franzens-Universit\u00e4t Graz","ror":"https://ror.org/01faaaf77"},{"id":"https://openalex.org/F4320326239","display_name":"Medizinische Universit\u00e4t Graz","ror":"https://ror.org/02n0bts35"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165852682.pdf","grobid_xml":"https://content.openalex.org/works/W2165852682.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2098044734","https://openalex.org/W2105643562","https://openalex.org/W2135093006","https://openalex.org/W2138768461","https://openalex.org/W2143266193","https://openalex.org/W2163827272","https://openalex.org/W2183538607"],"related_works":["https://openalex.org/W2136368487","https://openalex.org/W4283372525","https://openalex.org/W2405923535","https://openalex.org/W1993441963","https://openalex.org/W2102719726","https://openalex.org/W26805005","https://openalex.org/W1511848092","https://openalex.org/W1708042184","https://openalex.org/W110953263","https://openalex.org/W2118229857"],"abstract_inverted_index":{"Vaccines":[0],"and":[1,31,39,50,58,64,72,83,88,95,107,110,125,129,135,157,163,170,174,180,192,202,207,218,224,228,231,233],"drugs":[2],"have":[3,17],"contributed":[4],"to":[5,210],"dramatic":[6],"improvements":[7],"in":[8,20,67,85,93,137,149,204],"public":[9],"health":[10,38],"worldwide.":[11],"Over":[12],"the":[13,68,86,189,200,205],"last":[14],"decade,":[15],"there":[16],"been":[18],"efforts":[19],"developing":[21],"biomedical":[22,91],"ontologies":[23,34,92,120],"that":[24],"represent":[25],"various":[26],"areas":[27],"associated":[28],"with":[29,36,188],"vaccines":[30],"drugs.":[32],"These":[33],"combined":[35],"existing":[37],"clinical":[40,57,232],"terminology":[41],"systems":[42],"(e.g.,":[43],"SNOMED,":[44],"RxNorm,":[45],"NDF-RT,":[46],"MedDRA,":[47],"VO,":[48],"OAE,":[49],"AERO)":[51],"could":[52],"play":[53],"significant":[54],"roles":[55],"on":[56,142,154],"translational":[59],"research.":[60],"The":[61,113,185],"first":[62],"\"Vaccine":[63],"Drug":[65],"Ontology":[66],"Study":[69],"of":[70,90,121,123,126,132,139,160,226],"Mechanism":[71],"Effect\"":[73],"workshop":[74,114],"(VDOSME":[75],"2012)":[76],"provided":[77,195],"a":[78,196],"platform":[79,198],"for":[80,199,221],"discussing":[81],"problems":[82],"solutions":[84],"development":[87],"application":[89],"representing":[94],"analyzing":[96],"vaccines/drugs,":[97],"vaccine/drug":[98,161],"administrations,":[99],"vaccine/drug-induced":[100],"immune":[101,168],"responses":[102,106,165,169],"(including":[103,166],"positive":[104,167],"host":[105,164],"adverse":[108,171,176],"events),":[109,172],"similar":[111],"topics.":[112],"covered":[115],"two":[116],"main":[117],"areas:":[118],"(i)":[119],"vaccines,":[122],"drugs,":[124],"studies":[127],"thereof;":[128],"(ii)":[130],"analysis":[131,159,225],"administration,":[133],"mechanism":[134],"effect":[136],"terms":[138],"representations":[140],"based":[141],"such":[143],"ontologies.":[144],"Six":[145],"full-length":[146],"papers":[147],"included":[148],"this":[150],"thematic":[151],"issue":[152],"focus":[153],"ontology":[155],"representation":[156,223],"time":[158],"administration":[162],"vaccine":[173,206,227],"drug":[175,208],"event":[177],"text":[178],"mining,":[179],"ontology-based":[181],"Semantic":[182],"Web":[183],"applications.":[184],"workshop,":[186],"together":[187],"follow-up":[190],"activities":[191],"personal":[193],"meetings,":[194],"wonderful":[197],"researchers":[201],"scientists":[203],"communities":[209],"demonstrate":[211],"research":[212,234],"progresses,":[213],"share":[214],"ideas,":[215],"address":[216],"questions,":[217],"promote":[219],"collaborations":[220],"better":[222],"drug-related":[229],"terminologies":[230],"data.":[235]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-03-25T23:56:10.502304","created_date":"2025-10-10T00:00:00"}
