{"id":"https://openalex.org/W2130698371","doi":"https://doi.org/10.1186/2041-1480-3-10","title":"Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank","display_name":"Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2130698371","doi":"https://doi.org/10.1186/2041-1480-3-10","mag":"2130698371","pmid":"https://pubmed.ncbi.nlm.nih.gov/23244446"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-3-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-10","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-10","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-10","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051691741","display_name":"Jyotishman Pathak","orcid":"https://orcid.org/0000-0002-4856-410X"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jyotishman Pathak","raw_affiliation_strings":["Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA. pathak.jyotishman@mayo.edu","Division of Biomedical Statistics and Informatics Department of Health Sciences Research Mayo Clinic Rochester MN USA"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA. pathak.jyotishman@mayo.edu","institution_ids":[]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics Department of Health Sciences Research Mayo Clinic Rochester MN USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044998374","display_name":"Richard C. Kiefer","orcid":"https://orcid.org/0000-0002-0100-5829"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard C Kiefer","raw_affiliation_strings":["Department of Information Technology, Mayo Clinic, Rochester, MN, USA","Department of Information Technology, Mayo Clinic, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210125099"]},{"raw_affiliation_string":"Department of Information Technology, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006997452","display_name":"Suzette J. Bielinski","orcid":"https://orcid.org/0000-0002-2905-5430"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suzette J Bielinski","raw_affiliation_strings":["Division of Epidemiology, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA","Division of Epidemiology, Department of Health Sciences Research, Mayo Clinic, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Division of Epidemiology, Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Division of Epidemiology, Department of Health Sciences Research, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060390916","display_name":"Christopher G. Chute","orcid":"https://orcid.org/0000-0001-5437-2545"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher G Chute","raw_affiliation_strings":["Division of Biomedical Statistics and Informatics, Informatics, Mayo Clinic, Rochester, MN, USA","Division of Biomedical Statistics and Informatics, Informatics, Mayo Clinic, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Informatics, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5051691741"],"corresponding_institution_ids":["https://openalex.org/I4210146710"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":3.5197,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.93069983,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"3","issue":"1","first_page":"10","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9800999760627747,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phenome","display_name":"Phenome","score":0.9553009271621704},{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.943694531917572},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7324662208557129},{"id":"https://openalex.org/keywords/electronic-health-record","display_name":"Electronic health record","score":0.6556325554847717},{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.565908670425415},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5389090180397034},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4774244725704193},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.4548330008983612},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42947471141815186},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3512517511844635},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2655455470085144},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.1473524570465088},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.10863134264945984},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09826818108558655}],"concepts":[{"id":"https://openalex.org/C7952369","wikidata":"https://www.wikidata.org/wiki/Q844116","display_name":"Phenome","level":4,"score":0.9553009271621704},{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.943694531917572},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7324662208557129},{"id":"https://openalex.org/C3020144179","wikidata":"https://www.wikidata.org/wiki/Q10871684","display_name":"Electronic health record","level":3,"score":0.6556325554847717},{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.565908670425415},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5389090180397034},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4774244725704193},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.4548330008983612},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42947471141815186},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3512517511844635},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2655455470085144},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.1473524570465088},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.10863134264945984},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09826818108558655},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/2041-1480-3-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-10","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-10","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:23244446","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23244446","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:60e4b431dba249bbbde630cee264076f","is_oa":true,"landing_page_url":"https://doaj.org/article/60e4b431dba249bbbde630cee264076f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 3, Iss 1, p 10 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2555305","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3554594","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-3-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-3-10","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-3-10","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2075094911","display_name":null,"funder_award_id":"CA102701","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G3928216352","display_name":null,"funder_award_id":"P50CA102701","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G6577862717","display_name":null,"funder_award_id":"FP00058504","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G7563693709","display_name":null,"funder_award_id":"CA102701","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7994592470","display_name":null,"funder_award_id":"P50CA102701","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306143","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130698371.pdf","grobid_xml":"https://content.openalex.org/works/W2130698371.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W93250996","https://openalex.org/W1492064714","https://openalex.org/W1518684923","https://openalex.org/W1519521580","https://openalex.org/W1542433116","https://openalex.org/W1598377208","https://openalex.org/W1780507970","https://openalex.org/W1944558458","https://openalex.org/W1983386138","https://openalex.org/W1989603275","https://openalex.org/W2011980051","https://openalex.org/W2014077667","https://openalex.org/W2015191210","https://openalex.org/W2016104730","https://openalex.org/W2018880014","https://openalex.org/W2025143098","https://openalex.org/W2051512562","https://openalex.org/W2064337796","https://openalex.org/W2064670228","https://openalex.org/W2070359414","https://openalex.org/W2082122713","https://openalex.org/W2083172698","https://openalex.org/W2085333314","https://openalex.org/W2090365086","https://openalex.org/W2095754765","https://openalex.org/W2105714645","https://openalex.org/W2113105800","https://openalex.org/W2118094100","https://openalex.org/W2118355604","https://openalex.org/W2118978221","https://openalex.org/W2121920862","https://openalex.org/W2123171788","https://openalex.org/W2124204679","https://openalex.org/W2144360394","https://openalex.org/W2159379580","https://openalex.org/W2168893898","https://openalex.org/W2170941644","https://openalex.org/W2172027355","https://openalex.org/W2349402852"],"related_works":["https://openalex.org/W4387477033","https://openalex.org/W2949112115","https://openalex.org/W2799112143","https://openalex.org/W187932805","https://openalex.org/W4225008525","https://openalex.org/W4296851590","https://openalex.org/W4392490004","https://openalex.org/W1641026212","https://openalex.org/W2911982698","https://openalex.org/W2323588885"],"abstract_inverted_index":{"This":[0],"study":[1],"demonstrates":[2],"how":[3],"Semantic":[4],"Web":[5],"technologies":[6],"can":[7],"be":[8],"applied":[9],"in":[10,16],"conjunction":[11],"with":[12,22],"clinical":[13],"data":[14],"stored":[15],"EHRs":[17],"to":[18],"accurately":[19],"identify":[20,28],"subjects":[21],"specific":[23],"diseases":[24],"and":[25,27],"phenotypes,":[26],"genotype-phenotype":[29],"associations.":[30]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":5}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
