{"id":"https://openalex.org/W2162832420","doi":"https://doi.org/10.1186/2041-1480-2-8","title":"The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation","display_name":"The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2162832420","doi":"https://doi.org/10.1186/2041-1480-2-8","mag":"2162832420","pmid":"https://pubmed.ncbi.nlm.nih.gov/22024447"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-2-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-2-8","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-2-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-2-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067974158","display_name":"Mark D. Wilkinson","orcid":"https://orcid.org/0000-0001-6960-357X"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210144237","display_name":"St. Paul's Hospital","ror":"https://ror.org/04d0rfg41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I23625684","https://openalex.org/I4210144237"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Mark D Wilkinson","raw_affiliation_strings":["Department of Medical Genetics, Heart + Lung Institute at St, Paul's Hospital, University of British Columbia, Vancouver, BC, Canada. markw@illuminae.com","Department of Medical Genetics, Heart + Lung Institute at St. Paul's Hospital, University of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medical Genetics, Heart + Lung Institute at St, Paul's Hospital, University of British Columbia, Vancouver, BC, Canada. markw@illuminae.com","institution_ids":[]},{"raw_affiliation_string":"Department of Medical Genetics, Heart + Lung Institute at St. Paul's Hospital, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I4210144237","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077505259","display_name":"Benjamin P. Vandervalk","orcid":"https://orcid.org/0000-0002-3082-3476"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210144237","display_name":"St. Paul's Hospital","ror":"https://ror.org/04d0rfg41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I23625684","https://openalex.org/I4210144237"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Benjamin Vandervalk","raw_affiliation_strings":["Department of Medical Genetics, Heart + Lung Institute at St. Paul's Hospital, University of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medical Genetics, Heart + Lung Institute at St. Paul's Hospital, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I4210144237","https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086207954","display_name":"Luke McCarthy","orcid":null},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210144237","display_name":"St. Paul's Hospital","ror":"https://ror.org/04d0rfg41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I23625684","https://openalex.org/I4210144237"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Luke McCarthy","raw_affiliation_strings":["Department of Medical Genetics, Heart + Lung Institute at St. Paul's Hospital, University of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medical Genetics, Heart + Lung Institute at St. Paul's Hospital, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I4210144237","https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5067974158"],"corresponding_institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210144237"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":40.2627,"has_fulltext":true,"cited_by_count":125,"citation_normalized_percentile":{"value":0.9981725,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"2","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8532960414886475},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6676451563835144},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6615569591522217},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6137492060661316},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6006180644035339},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5176894664764404},{"id":"https://openalex.org/keywords/service-discovery","display_name":"Service discovery","score":0.5081491470336914},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4623715877532959},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2306150496006012}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8532960414886475},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6676451563835144},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6615569591522217},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6137492060661316},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6006180644035339},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5176894664764404},{"id":"https://openalex.org/C144097018","wikidata":"https://www.wikidata.org/wiki/Q4329404","display_name":"Service discovery","level":3,"score":0.5081491470336914},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4623715877532959},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2306150496006012},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/2041-1480-2-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-2-8","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-2-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:22024447","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22024447","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6a69af8afeba4e7182f87a2d0809cf5c","is_oa":true,"landing_page_url":"https://doaj.org/article/6a69af8afeba4e7182f87a2d0809cf5c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 2, Iss 1, p 8 (2011)","raw_type":"article"},{"id":"pmh:oai:nature.com:10101/npre.2011.6550.1","is_oa":true,"landing_page_url":"http://precedings.nature.com/documents/6550/version/1","pdf_url":null,"source":{"id":"https://openalex.org/S48744551","display_name":"Nature Precedings","issn_l":"1756-0357","issn":["1756-0357"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Precedings","raw_type":"Manuscript"},{"id":"pmh:oai:pubmedcentral.nih.gov:3212890","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3212890","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-2-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-2-8","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-2-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3969565085","display_name":null,"funder_award_id":"Foundation","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4389354971","display_name":null,"funder_award_id":"Research","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4498798387","display_name":null,"funder_award_id":"Canadian Institutes for Health Research","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320307845","display_name":"Heart and Stroke Foundation of Canada","ror":"https://ror.org/00qbpyp73"},{"id":"https://openalex.org/F4320308943","display_name":"Microsoft Research","ror":"https://ror.org/00d0nc645"},{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320314621","display_name":"Heart and Stroke Foundation of British Columbia and Yukon","ror":null},{"id":"https://openalex.org/F4320323180","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20"},{"id":"https://openalex.org/F4320326646","display_name":"Genome Alberta","ror":null},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162832420.pdf","grobid_xml":"https://content.openalex.org/works/W2162832420.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W387168707","https://openalex.org/W1499966647","https://openalex.org/W1561051808","https://openalex.org/W1577231857","https://openalex.org/W1578304052","https://openalex.org/W1714132059","https://openalex.org/W1856615448","https://openalex.org/W1971676632","https://openalex.org/W1974941207","https://openalex.org/W2008656488","https://openalex.org/W2015191210","https://openalex.org/W2028604102","https://openalex.org/W2040022355","https://openalex.org/W2040132477","https://openalex.org/W2054251921","https://openalex.org/W2087187521","https://openalex.org/W2094258495","https://openalex.org/W2094720043","https://openalex.org/W2107523227","https://openalex.org/W2115427121","https://openalex.org/W2118977923","https://openalex.org/W2120789186","https://openalex.org/W2154829072","https://openalex.org/W2160845726","https://openalex.org/W2160943260","https://openalex.org/W2160948978","https://openalex.org/W2161536823","https://openalex.org/W2168103533","https://openalex.org/W2169826929","https://openalex.org/W2912486915","https://openalex.org/W2987597094","https://openalex.org/W3162854473"],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W2123131699","https://openalex.org/W650116260","https://openalex.org/W2378329187","https://openalex.org/W913131694","https://openalex.org/W79697243","https://openalex.org/W3209454962","https://openalex.org/W2314257840","https://openalex.org/W2365800294","https://openalex.org/W2114539577"],"abstract_inverted_index":{"SADI":[0,38],"Services":[1],"are":[2,12,68],"fully":[3],"compliant":[4,73],"with,":[5],"and":[6,16,21,25,55,135],"utilize":[7],"only":[8],"foundational":[9],"Web":[10,112,133,137],"standards;":[11],"simple":[13],"to":[14,47,122],"create":[15],"maintain":[17],"for":[18],"service":[19],"providers;":[20],"can":[22,79,114],"be":[23,80,115],"discovered":[24],"utilized":[26],"in":[27,97,117,125],"a":[28,75,91,118],"very":[29,120],"intuitive":[30],"way":[31],"by":[32],"biologist":[33],"end-users.":[34],"In":[35],"addition,":[36],"the":[37,43,130],"design":[39],"patterns":[40],"significantly":[41],"improve":[42],"ability":[44],"of":[45,132],"software":[46],"automatically":[48,56,81],"discover":[49],"appropriate":[50],"services":[51,113,134],"based":[52],"on":[53],"user-needs,":[54],"chain":[57],"these":[58,86],"into":[59],"complex":[60],"analytical":[61],"workflows.":[62],"We":[63],"show":[64,104],"that,":[65,105],"when":[66],"resources":[67,89],"exposed":[69],"through":[70],"SADI,":[71,107],"data":[72,108,123],"with":[74],"given":[76],"ontological":[77],"model":[78],"gathered,":[82],"or":[83],"generated,":[84],"from":[85,111],"distributed,":[87],"non-coordinating":[88],"-":[90],"behaviour":[92],"we":[93,103],"have":[94],"not":[95],"observed":[96],"any":[98],"other":[99],"Semantic":[100,136],"system.":[101],"Finally,":[102],"using":[106],"dynamically":[109],"generated":[110],"explored":[116],"manner":[119],"similar":[121],"housed":[124],"static":[126],"triple-stores,":[127],"thus":[128],"facilitating":[129],"intersection":[131],"technologies.":[138]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":20},{"year":2014,"cited_by_count":18},{"year":2013,"cited_by_count":22},{"year":2012,"cited_by_count":13}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
