{"id":"https://openalex.org/W2152035852","doi":"https://doi.org/10.1186/2041-1480-1-9","title":"Simple tricks for improving pattern-based information extraction from the biomedical literature","display_name":"Simple tricks for improving pattern-based information extraction from the biomedical literature","publication_year":2010,"publication_date":"2010-09-24","ids":{"openalex":"https://openalex.org/W2152035852","doi":"https://doi.org/10.1186/2041-1480-1-9","mag":"2152035852","pmid":"https://pubmed.ncbi.nlm.nih.gov/20868467"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-1-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-9","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-9","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Quang Long Nguyen","orcid":null},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Quang Long Nguyen","raw_affiliation_strings":["Knowledge Management in Bioinformatics, Department for Computer Science, Humboldt-Universit\u00e4t zu Berlin, Germany. leser@informatik.hu-berlin.de","Knowledge Management in Bioinformatics, Department for Computer Science, Humboldt-Universit\u00e4t zu, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Knowledge Management in Bioinformatics, Department for Computer Science, Humboldt-Universit\u00e4t zu Berlin, Germany. leser@informatik.hu-berlin.de","institution_ids":["https://openalex.org/I39343248"]},{"raw_affiliation_string":"Knowledge Management in Bioinformatics, Department for Computer Science, Humboldt-Universit\u00e4t zu, Berlin, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070226189","display_name":"Domonkos Tikk","orcid":null},"institutions":[{"id":"https://openalex.org/I29770179","display_name":"Budapest University of Technology and Economics","ror":"https://ror.org/02w42ss30","country_code":"HU","type":"education","lineage":["https://openalex.org/I29770179"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE","HU"],"is_corresponding":false,"raw_author_name":"Domonkos Tikk","raw_affiliation_strings":["Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, Hungary","Knowledge Management in Bioinformatics, Department for Computer Science, Humboldt-Universit\u00e4t zu, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, Hungary","institution_ids":["https://openalex.org/I29770179"]},{"raw_affiliation_string":"Knowledge Management in Bioinformatics, Department for Computer Science, Humboldt-Universit\u00e4t zu, Berlin, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055236937","display_name":"Ulf Leser","orcid":"https://orcid.org/0000-0003-2166-9582"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ulf Leser","raw_affiliation_strings":["Knowledge Management in Bioinformatics, Department for Computer Science, Humboldt-Universit\u00e4t zu, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Knowledge Management in Bioinformatics, Department for Computer Science, Humboldt-Universit\u00e4t zu, Berlin, Germany","institution_ids":["https://openalex.org/I39343248"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I39343248"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":1.0843,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.76706588,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"1","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9751999974250793,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8914567828178406},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.6787437796592712},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6545525789260864},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6530886292457581},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.6251091957092285},{"id":"https://openalex.org/keywords/simplicity","display_name":"Simplicity","score":0.6191144585609436},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5680414438247681},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.52447909116745},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45793747901916504},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.4447319805622101},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.39148658514022827},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37752005457878113},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3665279746055603}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8914567828178406},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.6787437796592712},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6545525789260864},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6530886292457581},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.6251091957092285},{"id":"https://openalex.org/C2776372474","wikidata":"https://www.wikidata.org/wiki/Q508291","display_name":"Simplicity","level":2,"score":0.6191144585609436},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5680414438247681},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.52447909116745},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45793747901916504},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.4447319805622101},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.39148658514022827},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37752005457878113},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3665279746055603},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/2041-1480-1-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-9","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-9","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:20868467","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20868467","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:85032091a08c4a31a0e745ae7485d745","is_oa":true,"landing_page_url":"https://doaj.org/article/85032091a08c4a31a0e745ae7485d745","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 1, Iss 1, p 9 (2010)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:1967258","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2955645","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-1-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-9","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-9","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.800000011920929}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323346","display_name":"B\u1ed9 Gi\u00e1o d\u1ee5c v\u00e0 \u00d0\u00e0o t\u1ea1o","ror":"https://ror.org/00drv3378"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152035852.pdf","grobid_xml":"https://content.openalex.org/works/W2152035852.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W9328536","https://openalex.org/W1480376833","https://openalex.org/W1493270114","https://openalex.org/W1759990168","https://openalex.org/W1818857488","https://openalex.org/W1915408880","https://openalex.org/W1940315767","https://openalex.org/W1975481163","https://openalex.org/W1981933378","https://openalex.org/W2032566933","https://openalex.org/W2048059249","https://openalex.org/W2054658115","https://openalex.org/W2062163602","https://openalex.org/W2064030835","https://openalex.org/W2075655036","https://openalex.org/W2097960255","https://openalex.org/W2099369363","https://openalex.org/W2103320915","https://openalex.org/W2108010925","https://openalex.org/W2108604762","https://openalex.org/W2111727122","https://openalex.org/W2120736575","https://openalex.org/W2127224553","https://openalex.org/W2142063400","https://openalex.org/W2149803936","https://openalex.org/W2151598682","https://openalex.org/W2152698860","https://openalex.org/W2156930958","https://openalex.org/W2162461580","https://openalex.org/W2163980860","https://openalex.org/W2168091548","https://openalex.org/W2168905447","https://openalex.org/W3082731548","https://openalex.org/W3197473240"],"related_works":["https://openalex.org/W4210711561","https://openalex.org/W2352298027","https://openalex.org/W4319940250","https://openalex.org/W842810586","https://openalex.org/W2092919065","https://openalex.org/W4236762297","https://openalex.org/W3138801416","https://openalex.org/W2369351710","https://openalex.org/W2594363579","https://openalex.org/W2169232658"],"abstract_inverted_index":{"Already":[0],"very":[1],"simple":[2],"filtering":[3,43],"techniques":[4,44],"may":[5],"improve":[6],"the":[7,21,41],"F-score":[8],"of":[9,23],"an":[10],"information":[11,56],"extraction":[12],"method":[13],"based":[14],"on":[15],"automatically":[16],"generated":[17],"patterns":[18,54],"significantly.":[19],"Furthermore,":[20],"application":[22],"such":[24],"methods":[25,51],"yields":[26],"a":[27],"considerable":[28],"speed-up,":[29],"as":[30],"fewer":[31],"matches":[32],"need":[33],"to":[34,38,49],"be":[35,47],"analysed.":[36],"Due":[37],"their":[39],"simplicity,":[40],"proposed":[42],"also":[45],"should":[46],"applicable":[48],"other":[50],"using":[52],"linguistic":[53],"for":[55],"extraction.":[57]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
