{"id":"https://openalex.org/W2124216778","doi":"https://doi.org/10.1186/2041-1480-1-6","title":"De-identifying Swedish clinical text - refinement of a gold standard and experiments with Conditional random fields","display_name":"De-identifying Swedish clinical text - refinement of a gold standard and experiments with Conditional random fields","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2124216778","doi":"https://doi.org/10.1186/2041-1480-1-6","mag":"2124216778","pmid":"https://pubmed.ncbi.nlm.nih.gov/20618985"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-1-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-6","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010279607","display_name":"Hercules Dalianis","orcid":"https://orcid.org/0000-0003-0165-9926"},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Hercules Dalianis","raw_affiliation_strings":["Department of Computer and Systems Sciences, (DSV), Stockholm University Forum 100, 164 40 Kista, Sweden. hercules@dsv.su.se","Department of Computer and Systems Sciences (DSV), Stockholm University, Forum 100, 164 40 Kista, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Systems Sciences, (DSV), Stockholm University Forum 100, 164 40 Kista, Sweden. hercules@dsv.su.se","institution_ids":[]},{"raw_affiliation_string":"Department of Computer and Systems Sciences (DSV), Stockholm University, Forum 100, 164 40 Kista, Sweden","institution_ids":["https://openalex.org/I161593684"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070579609","display_name":"Sumithra Velupillai","orcid":"https://orcid.org/0000-0002-4178-2980"},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Sumithra Velupillai","raw_affiliation_strings":["Department of Computer and Systems Sciences, (DSV), Stockholm University Forum 100, 2, Kista, Sweden","Department of Computer and Systems Sciences, (DSV), Stockholm University Forum 100, Kista, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Systems Sciences, (DSV), Stockholm University Forum 100, 2, Kista, Sweden","institution_ids":["https://openalex.org/I161593684"]},{"raw_affiliation_string":"Department of Computer and Systems Sciences, (DSV), Stockholm University Forum 100, Kista, Sweden","institution_ids":["https://openalex.org/I161593684"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5010279607"],"corresponding_institution_ids":["https://openalex.org/I161593684"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":1.6265,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.83055984,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"1","issue":"1","first_page":"6","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12072","display_name":"Machine Learning and Algorithms","score":0.9771000146865845,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7222217917442322},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.6294821500778198},{"id":"https://openalex.org/keywords/gold-standard","display_name":"Gold standard (test)","score":0.6097928881645203},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36897286772727966},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.362583190202713},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34271439909935},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.2535296678543091},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.19232094287872314},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12561988830566406}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7222217917442322},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.6294821500778198},{"id":"https://openalex.org/C40993552","wikidata":"https://www.wikidata.org/wiki/Q514654","display_name":"Gold standard (test)","level":2,"score":0.6097928881645203},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36897286772727966},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.362583190202713},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34271439909935},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.2535296678543091},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.19232094287872314},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12561988830566406}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/2041-1480-1-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-6","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:20618985","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20618985","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.180.4928","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.180.4928","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://people.dsv.su.se/%7Ehercules/papers/Dalianis_Velupillai-De-identifying_Swedish_Clinical_Text-CRF.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:7d8645a6b9c548d7abfedd505b9678a4","is_oa":true,"landing_page_url":"https://doaj.org/article/7d8645a6b9c548d7abfedd505b9678a4","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 1, Iss 1, p 6 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2895734","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2895734","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-1-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-6","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322315","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124216778.pdf","grobid_xml":"https://content.openalex.org/works/W2124216778.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W154076710","https://openalex.org/W302317711","https://openalex.org/W1262131959","https://openalex.org/W1680392829","https://openalex.org/W1907289485","https://openalex.org/W1995228216","https://openalex.org/W2061848042","https://openalex.org/W2068882115","https://openalex.org/W2088747527","https://openalex.org/W2096765155","https://openalex.org/W2101135401","https://openalex.org/W2122314939","https://openalex.org/W2124216778","https://openalex.org/W2133362931","https://openalex.org/W2141766660","https://openalex.org/W2150944609","https://openalex.org/W2153072998","https://openalex.org/W2156061936","https://openalex.org/W2160987310","https://openalex.org/W2540149843","https://openalex.org/W2570764145","https://openalex.org/W2595408825","https://openalex.org/W2966673846","https://openalex.org/W4230722969"],"related_works":["https://openalex.org/W2356597680","https://openalex.org/W2114846443","https://openalex.org/W3102147106","https://openalex.org/W2093471820","https://openalex.org/W2347460059","https://openalex.org/W50079190","https://openalex.org/W2111726165","https://openalex.org/W3136048405","https://openalex.org/W182104056","https://openalex.org/W3143595119"],"abstract_inverted_index":{"Our":[0],"intention":[1],"is":[2,33],"to":[3,14,48],"make":[4],"this":[5],"Gold":[6],"standard,":[7],"The":[8],"Stockholm":[9],"EPR":[10],"PHI":[11],"Corpus,":[12],"available":[13],"other":[15],"research":[16],"groups":[17],"in":[18],"the":[19,28,34],"future.":[20],"Despite":[21],"being":[22],"slightly":[23],"more":[24],"time-consuming":[25],"we":[26],"believe":[27],"manual":[29],"consensus":[30],"gold":[31],"standard":[32],"most":[35],"valuable":[36],"for":[37,51],"further":[38],"research.":[39],"We":[40],"also":[41],"propose":[42],"a":[43],"set":[44],"of":[45],"annotation":[46],"classes":[47],"be":[49],"used":[50],"similar":[52],"de-identification":[53],"tasks.":[54]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
