{"id":"https://openalex.org/W1970967239","doi":"https://doi.org/10.1186/2041-1480-1-5","title":"Rewriting and suppressing UMLS terms for improved biomedical term identification","display_name":"Rewriting and suppressing UMLS terms for improved biomedical term identification","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W1970967239","doi":"https://doi.org/10.1186/2041-1480-1-5","mag":"1970967239","pmid":"https://pubmed.ncbi.nlm.nih.gov/20618981"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-1-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-5","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029869005","display_name":"Kristina Hettne","orcid":"https://orcid.org/0000-0002-4182-7560"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]},{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Kristina M Hettne","raw_affiliation_strings":["Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, the Netherlands. k.hettne@erasmusmc.nl","Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","Department of Health Risk Analysis and Toxicology, Maastricht University, Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, the Netherlands. k.hettne@erasmusmc.nl","institution_ids":["https://openalex.org/I2801952686","https://openalex.org/I913958620"]},{"raw_affiliation_string":"Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Department of Health Risk Analysis and Toxicology, Maastricht University, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053857782","display_name":"Erik M. van Mulligen","orcid":"https://orcid.org/0000-0003-1377-9386"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Erik M van Mulligen","raw_affiliation_strings":["Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, the Netherlands","Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, the Netherlands","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077586396","display_name":"Martijn J. Schuemie","orcid":"https://orcid.org/0000-0002-0817-5361"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Martijn J Schuemie","raw_affiliation_strings":["Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, the Netherlands","Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, the Netherlands","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079799214","display_name":"Bob J.A. Schijvenaars","orcid":"https://orcid.org/0000-0002-8508-3225"},"institutions":[{"id":"https://openalex.org/I4210087940","display_name":"Technology Holding (United States)","ror":"https://ror.org/005mr0595","country_code":"US","type":"company","lineage":["https://openalex.org/I4210087940"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bob JA Schijvenaars","raw_affiliation_strings":["Collexis Holdings Inc, Columbia, SC, USA","Collexis Holdings Inc"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Collexis Holdings Inc, Columbia, SC, USA","institution_ids":["https://openalex.org/I4210087940"]},{"raw_affiliation_string":"Collexis Holdings Inc","institution_ids":["https://openalex.org/I4210087940"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005077862","display_name":"Jan A. Kors","orcid":"https://orcid.org/0000-0002-4929-026X"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jan A Kors","raw_affiliation_strings":["Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, the Netherlands","Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, the Netherlands","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5029869005"],"corresponding_institution_ids":["https://openalex.org/I2801952686","https://openalex.org/I34352273","https://openalex.org/I913958620"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":1.7424,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.83242541,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"1","issue":"1","first_page":"5","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9391000270843506,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9391000270843506,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.012799999676644802,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.011800000444054604,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.9426847696304321},{"id":"https://openalex.org/keywords/rewriting","display_name":"Rewriting","score":0.8034578561782837},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.765606701374054},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7010854482650757},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.6981642246246338},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.577726423740387},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5036365389823914},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4759768545627594},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3512815237045288},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19531604647636414}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.9426847696304321},{"id":"https://openalex.org/C154690210","wikidata":"https://www.wikidata.org/wiki/Q1668499","display_name":"Rewriting","level":2,"score":0.8034578561782837},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.765606701374054},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7010854482650757},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.6981642246246338},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.577726423740387},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5036365389823914},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4759768545627594},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3512815237045288},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19531604647636414},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":10,"locations":[{"id":"doi:10.1186/2041-1480-1-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-5","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:20618981","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20618981","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:eur:oai:pure.eur.nl:publications/7b37bb80-e9fd-46df-be4e-60efc1adf3ac","is_oa":false,"landing_page_url":"https://pure.eur.nl/en/publications/7b37bb80-e9fd-46df-be4e-60efc1adf3ac","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, 1(1). BioMed Central Ltd.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:eur:oai:repub.eur.nl:57618","is_oa":true,"landing_page_url":"http://hdl.handle.net/1765/57618","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, 1","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:23498c7409704dcb8f48b95b363eaafc","is_oa":false,"landing_page_url":"https://doaj.org/article/23498c7409704dcb8f48b95b363eaafc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 1, Iss 1, p 5 (2010)","raw_type":"article"},{"id":"pmh:oai:openaccess.leidenuniv.nl:1887/77523","is_oa":false,"landing_page_url":"http://hdl.handle.net/1887/77523","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"1","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:pubmedcentral.nih.gov:2895736","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2895736","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:repub.eur.nl:57618","is_oa":true,"landing_page_url":"http://repub.eur.nl/pub/57618","pdf_url":null,"source":{"id":"https://openalex.org/S4377196287","display_name":"RePub (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics vol. 1","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_2973596","is_oa":false,"landing_page_url":"https://hdl.handle.net/1887/77523","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal Biomedical Semantics","raw_type":"Article / Letter to editor"},{"id":"pmh:um:oai:cris.maastrichtuniversity.nl:publications/9147103b-ec8a-457a-bc5c-5e0111f4b833","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/9147103b-ec8a-457a-bc5c-5e0111f4b833","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of biomedical semantics, 1(1):5. BioMed Central Ltd","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-1-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-5","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7799999713897705,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320334893","display_name":"Stichting voor de Technische Wetenschappen","ror":"https://ror.org/057tq3593"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1970967239.pdf","grobid_xml":"https://content.openalex.org/works/W1970967239.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W77347155","https://openalex.org/W153154704","https://openalex.org/W304264882","https://openalex.org/W1507826778","https://openalex.org/W1537280846","https://openalex.org/W1550258693","https://openalex.org/W1553011358","https://openalex.org/W1553529581","https://openalex.org/W1739940154","https://openalex.org/W1970967239","https://openalex.org/W1982821603","https://openalex.org/W1991154713","https://openalex.org/W2011726136","https://openalex.org/W2031627786","https://openalex.org/W2039612385","https://openalex.org/W2040899072","https://openalex.org/W2053673723","https://openalex.org/W2064802889","https://openalex.org/W2067096102","https://openalex.org/W2080943118","https://openalex.org/W2089177530","https://openalex.org/W2099369363","https://openalex.org/W2118877284","https://openalex.org/W2121244856","https://openalex.org/W2127499728","https://openalex.org/W2128214407","https://openalex.org/W2133629218","https://openalex.org/W2135063148","https://openalex.org/W2140407633","https://openalex.org/W2142063400","https://openalex.org/W2149906679","https://openalex.org/W2159583324","https://openalex.org/W2168905447","https://openalex.org/W2170563762","https://openalex.org/W2522519459"],"related_works":["https://openalex.org/W2120204135","https://openalex.org/W1796293478","https://openalex.org/W79619734","https://openalex.org/W2010487328","https://openalex.org/W2340589664","https://openalex.org/W2030557042","https://openalex.org/W4387560745","https://openalex.org/W1497216778","https://openalex.org/W1822792362","https://openalex.org/W1507779355"],"abstract_inverted_index":{"BACKGROUND:":[0],"Identification":[1],"of":[2,16,70,98,111,138,150,170,177,206,237,242,247,252,262],"terms":[3,99,114,133,142,173,209,218,228,243,265,276],"is":[4,234,301,321],"essential":[5],"for":[6,18,34,145,305],"biomedical":[7,35,306],"text":[8,36],"mining..":[9],"We":[10,283],"concentrate":[11],"here":[12],"on":[13,53,95,105],"the":[14,22,30,81,86,93,96,102,126,151,168,171,178,190,213,240,250,256,269,280,286,299,319],"use":[15],"vocabularies":[17],"term":[19,43,47,307],"identification,":[20],"specifically":[21],"Unified":[23],"Medical":[24],"Language":[25],"System":[26],"(UMLS).":[27],"To":[28],"make":[29],"UMLS":[31,54,300,320],"more":[32],"suitable":[33],"mining":[37],"we":[38,91,198,215,225],"implemented":[39],"and":[40,45,115,123,161,174,244,290],"evaluated":[41,144],"nine":[42,152],"rewrite":[44,153,192,288],"eight":[46,179],"suppression":[48,180,258,292],"rules.":[49,127],"The":[50,109,128],"rules":[51,104,154,181,193,289,293,317],"rely":[52],"properties":[55,72],"that":[56,90,164,194,294],"have":[57],"been":[58],"identified":[59,100,113],"in":[60,89,118,210,239,249,268,279,309],"previous":[61],"work":[62,79,84,88],"by":[63,74,101],"others,":[64],"together":[65,134],"with":[66,80,135,223],"an":[67,235,245],"additional":[68,159],"set":[69],"new":[71,204],"discovered":[73],"our":[75,78,196,296],"group":[76],"during":[77],"UMLS.":[82],"Our":[83],"complements":[85],"earlier":[87],"measure":[92],"impact":[94],"number":[97,110,241,251],"different":[103],"a":[106,136,260],"MEDLINE":[107,119],"corpus.":[108,281],"uniquely":[112],"their":[116],"frequency":[117],"were":[120,143,155,182,199,266,277],"computed":[121],"before":[122],"after":[124],"applying":[125,285],"50":[129],"most":[130],"frequently":[131],"found":[132,156,183],"sample":[137],"100":[139],"randomly":[140],"selected":[141],"every":[146],"rule.":[147],"RESULTS:":[148],"Five":[149],"to":[157,167,184,201,220,230,302,314,318],"generate":[158],"synonyms":[160],"spelling":[162],"variants":[163],"correctly":[165],"corresponded":[166],"meaning":[169],"original":[172],"seven":[175,257,291],"out":[176],"suppress":[185],"only":[186],"undesired":[187,264],"terms.":[188],"Using":[189,255],"five":[191,287],"passed":[195,295],"evaluation,":[197],"able":[200],"identify":[202],"1,117,772":[203],"occurrences":[205],"14,784":[207],"rewritten":[208],"MEDLINE.":[211,310],"Without":[212],"rewriting,":[214,224],"recognized":[216,226],"651,268":[217],"belonging":[219,229],"397,414":[221],"concepts;":[222],"666,053":[227],"410,823":[231],"concepts,":[232],"which":[233],"increase":[236,246],"2.8%":[238],"3.4%":[248],"concepts":[253],"recognized.":[254],"rules,":[259],"total":[261],"257,118":[263],"suppressed":[267,278],"UMLS,":[270],"notably":[271],"decreasing":[272],"its":[273],"size.":[274],"7,397":[275],"CONCLUSIONS:":[282],"recommend":[284],"evaluation":[297],"when":[298],"be":[303],"used":[304],"identification":[308],"A":[311],"software":[312],"tool":[313],"apply":[315],"these":[316],"freely":[322],"available":[323],"at":[324],"http://biosemantics.org/casper.":[325]},"counts_by_year":[{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-25T09:21:30.201066","created_date":"2025-10-10T00:00:00"}
