{"id":"https://openalex.org/W2130416870","doi":"https://doi.org/10.1186/2041-1480-1-10","title":"Foundations for a realist ontology of mental disease","display_name":"Foundations for a realist ontology of mental disease","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2130416870","doi":"https://doi.org/10.1186/2041-1480-1-10","mag":"2130416870","pmid":"https://pubmed.ncbi.nlm.nih.gov/21143905"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-1-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-10","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-10","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-10","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007545122","display_name":"Werner Ceusters","orcid":"https://orcid.org/0000-0002-2676-8689"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Werner Ceusters","raw_affiliation_strings":["Ontology Research Group, Center of Excellence in Bioinformatics and Life Sciences, 701 Ellicott street, Buffalo, NY 14203, USA. ceusters@buffalo.edu","Ontology Research Group, Center of Excellence in Bioinformatics and Life Sciences, 701 Ellicott street, Buffalo, NY, 14203, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ontology Research Group, Center of Excellence in Bioinformatics and Life Sciences, 701 Ellicott street, Buffalo, NY 14203, USA. ceusters@buffalo.edu","institution_ids":["https://openalex.org/I63190737"]},{"raw_affiliation_string":"Ontology Research Group, Center of Excellence in Bioinformatics and Life Sciences, 701 Ellicott street, Buffalo, NY, 14203, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051216244","display_name":"Barry Smith","orcid":"https://orcid.org/0000-0003-1384-116X"},"institutions":[{"id":"https://openalex.org/I1292871996","display_name":"MetLife (United States)","ror":"https://ror.org/01c3dm486","country_code":"US","type":"company","lineage":["https://openalex.org/I1292871996"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barry Smith","raw_affiliation_strings":["Ontology Research Group, Center of Excellence in Bioinformatics and Life Sciences, 701 Ellicott street, Buffalo, NY 14203, USA","Ontology Research Group, Center of Excellence in Bioinformatics and Life Sciences, 701 Ellicott street, Buffalo, NY, 14203, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ontology Research Group, Center of Excellence in Bioinformatics and Life Sciences, 701 Ellicott street, Buffalo, NY 14203, USA","institution_ids":["https://openalex.org/I1292871996"]},{"raw_affiliation_string":"Ontology Research Group, Center of Excellence in Bioinformatics and Life Sciences, 701 Ellicott street, Buffalo, NY, 14203, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":2.2402,"has_fulltext":true,"cited_by_count":78,"citation_normalized_percentile":{"value":0.87994975,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"1","issue":"1","first_page":"10","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12308","display_name":"Mental Health and Psychiatry","score":0.9624000191688538,"subfield":{"id":"https://openalex.org/subfields/1211","display_name":"Philosophy"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9452000260353088,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.8419829607009888},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.773795485496521},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6917922496795654},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5895469784736633},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.542231559753418},{"id":"https://openalex.org/keywords/mental-representation","display_name":"Mental representation","score":0.5163127779960632},{"id":"https://openalex.org/keywords/sort","display_name":"sort","score":0.4754716455936432},{"id":"https://openalex.org/keywords/embodied-cognition","display_name":"Embodied cognition","score":0.4600929617881775},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.4304388761520386},{"id":"https://openalex.org/keywords/cognitive-science","display_name":"Cognitive science","score":0.3826572299003601},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35692042112350464},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2901516556739807},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.2751535177230835},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.21796110272407532},{"id":"https://openalex.org/keywords/psychiatry","display_name":"Psychiatry","score":0.17761075496673584},{"id":"https://openalex.org/keywords/cognition","display_name":"Cognition","score":0.12698698043823242},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.12064483761787415}],"concepts":[{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.8419829607009888},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.773795485496521},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6917922496795654},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5895469784736633},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.542231559753418},{"id":"https://openalex.org/C96199812","wikidata":"https://www.wikidata.org/wiki/Q2145290","display_name":"Mental representation","level":3,"score":0.5163127779960632},{"id":"https://openalex.org/C88548561","wikidata":"https://www.wikidata.org/wiki/Q347599","display_name":"sort","level":2,"score":0.4754716455936432},{"id":"https://openalex.org/C100609095","wikidata":"https://www.wikidata.org/wiki/Q1335050","display_name":"Embodied cognition","level":2,"score":0.4600929617881775},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.4304388761520386},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.3826572299003601},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35692042112350464},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2901516556739807},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.2751535177230835},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.21796110272407532},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.17761075496673584},{"id":"https://openalex.org/C169900460","wikidata":"https://www.wikidata.org/wiki/Q2200417","display_name":"Cognition","level":2,"score":0.12698698043823242},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.12064483761787415},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/2041-1480-1-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-10","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-10","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:21143905","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21143905","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:a20a7351d72144c493d2b6ae3b0a184f","is_oa":true,"landing_page_url":"https://doaj.org/article/a20a7351d72144c493d2b6ae3b0a184f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 1, Iss 1, p 10 (2010)","raw_type":"article"},{"id":"pmh:oai:philarchive.org/rec/CEUFFA","is_oa":false,"landing_page_url":"https://philarchive.org/rec/CEUFFA","pdf_url":null,"source":{"id":"https://openalex.org/S4306402130","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:philpapers.org/rec/CEUFFA","is_oa":false,"landing_page_url":"https://philpapers.org/rec/CEUFFA","pdf_url":null,"source":{"id":"https://openalex.org/S4306402131","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3017014","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3017014","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-1-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-1-10","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-1-10","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2225135173","display_name":null,"funder_award_id":"U54 HG004028","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320306461","display_name":"John R. Oishei Foundation","ror":"https://ror.org/05jj8cx84"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130416870.pdf","grobid_xml":"https://content.openalex.org/works/W2130416870.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W37655059","https://openalex.org/W51515353","https://openalex.org/W1503900651","https://openalex.org/W1539746399","https://openalex.org/W1555520648","https://openalex.org/W1586700544","https://openalex.org/W1628054318","https://openalex.org/W1690072465","https://openalex.org/W1694877183","https://openalex.org/W1734858766","https://openalex.org/W1981625432","https://openalex.org/W1981732549","https://openalex.org/W1987006508","https://openalex.org/W1999684316","https://openalex.org/W2007312415","https://openalex.org/W2083136549","https://openalex.org/W2090154982","https://openalex.org/W2098741739","https://openalex.org/W2102945862","https://openalex.org/W2103260426","https://openalex.org/W2105783830","https://openalex.org/W2113142309","https://openalex.org/W2113440438","https://openalex.org/W2119859848","https://openalex.org/W2120307513","https://openalex.org/W2126839335","https://openalex.org/W2130416870","https://openalex.org/W2131620854","https://openalex.org/W2133476432","https://openalex.org/W2135140530","https://openalex.org/W2136961946","https://openalex.org/W2146871965","https://openalex.org/W2153847003","https://openalex.org/W2156239742","https://openalex.org/W2159151673","https://openalex.org/W2160674432","https://openalex.org/W2292683067","https://openalex.org/W2347076167","https://openalex.org/W2530333351","https://openalex.org/W2914205435","https://openalex.org/W2940779328","https://openalex.org/W3134570451","https://openalex.org/W3135545521","https://openalex.org/W4244871788","https://openalex.org/W4299162249","https://openalex.org/W4302878928"],"related_works":["https://openalex.org/W2350593162","https://openalex.org/W2390350206","https://openalex.org/W1969477129","https://openalex.org/W2921208823","https://openalex.org/W2380179524","https://openalex.org/W4283365723","https://openalex.org/W2963001125","https://openalex.org/W2091233881","https://openalex.org/W2352366064","https://openalex.org/W2353483812"],"abstract_inverted_index":{"While":[0,28],"classifications":[1],"of":[2,43,58,61,69,78,85,109,114,153,165,196,204,219,229],"mental":[3,86,127,184,205],"disorders":[4],"have":[5,30,51],"existed":[6],"for":[7,135,161,216],"over":[8],"one":[9],"hundred":[10],"years,":[11],"it":[12],"still":[13],"remains":[14],"unspecified":[15],"what":[16,123,210],"terms":[17],"such":[18],"as":[19,125,159],"'mental":[20],"disorder',":[21],"'disease'":[22],"and":[23,73,94,105,138,155,186,198,207,221],"'illness'":[24],"might":[25],"actually":[26],"denote.":[27],"ontologies":[29],"been":[31],"called":[32],"in":[33,100,106,111,131,140,168,193,200,208,235,241],"aid":[34],"to":[35,53,147,174,183,224,237],"address":[36],"this":[37],"shortfall":[38],"since":[39],"the":[40,44,59,70,76,79,97,107,112,132,136,150,166,179,194,201,217,227,230,242],"GALEN":[41],"project":[42],"early":[45],"1990s,":[46],"most":[47],"attempts":[48],"thus":[49],"far":[50],"sought":[52],"provide":[54],"a":[55,83,126,162,214],"formal":[56,163],"description":[57],"structure":[60],"some":[62],"pre-existing":[63],"terminology":[64,203],"or":[65],"classification,":[66],"rather":[67],"than":[68],"corresponding":[71,188],"structures":[72],"processes":[74],"on":[75,91,226],"side":[77,228],"patient.We":[80],"here":[81],"present":[82],"view":[84],"disease":[87,128,185,206],"that":[88,170,232],"is":[89,213,233],"based":[90],"ontological":[92],"realism":[93],"which":[95],"follows":[96],"principles":[98],"embodied":[99],"Basic":[101],"Formal":[102],"Ontology":[103,113],"(BFO)":[104],"application":[108],"BFO":[110,154],"General":[115],"Medical":[116],"Science":[117],"(OGMS).":[118],"We":[119,176],"analyzed":[120,178],"statements":[121,172],"about":[122],"counts":[124],"provided":[129,187],"(1)":[130],"research":[133],"agenda":[134],"DSM-V,":[137],"(2)":[139],"Pies'":[141],"model.":[142],"The":[143],"results":[144],"were":[145,157],"used":[146],"assess":[148],"whether":[149],"representational":[151,180],"units":[152,181],"OGMS":[156],"adequate":[158],"foundations":[160],"representation":[164],"entities":[167,225],"reality":[169],"these":[171,239],"attempt":[173],"describe.":[175],"then":[177],"specific":[182],"definitions.Our":[189],"key":[190],"contributions":[191],"lie":[192],"identification":[195],"confusions":[197,240],"conflations":[199],"existing":[202],"providing":[209],"we":[211],"believe":[212],"framework":[215],"sort":[218],"clear":[220],"unambiguous":[222],"reference":[223],"patient":[231],"needed":[234],"order":[236],"avoid":[238],"future.":[243]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":9}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
