{"id":"https://openalex.org/W2135616521","doi":"https://doi.org/10.1186/1758-2946-7-s1-s8","title":"A comparison of conditional random fields and structured support vector machines for chemical entity recognition in biomedical literature","display_name":"A comparison of conditional random fields and structured support vector machines for chemical entity recognition in biomedical literature","publication_year":2015,"publication_date":"2015-01-19","ids":{"openalex":"https://openalex.org/W2135616521","doi":"https://doi.org/10.1186/1758-2946-7-s1-s8","mag":"2135616521","pmid":"https://pubmed.ncbi.nlm.nih.gov/25810779"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-7-s1-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-7-s1-s8","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-7-S1-S8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-7-S1-S8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014238603","display_name":"Buzhou Tang","orcid":"https://orcid.org/0000-0003-0271-8246"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Buzhou Tang","raw_affiliation_strings":["Department of Computer Science, Harbin Institute of Technology Shenzhen Guraduate, Shenzhen, Guangdong, China ; School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","Department of Computer Science, Harbin Institute of Technology Shenzhen Guraduate, Shenzhen, Guangdong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Harbin Institute of Technology Shenzhen Guraduate, Shenzhen, Guangdong, China ; School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of Computer Science, Harbin Institute of Technology Shenzhen Guraduate, Shenzhen, Guangdong, China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101015868","display_name":"Yu-Dong Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I4210156501","display_name":"First Affiliated Hospital of Harbin Medical University","ror":"https://ror.org/05vy2sc54","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210156501"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yudong Feng","raw_affiliation_strings":["Department of Pharmacy, the First Affiliated Hospital, Harbin Medical University Harbin, Heilongjiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy, the First Affiliated Hospital, Harbin Medical University Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210156501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100424254","display_name":"Xiaolong Wang","orcid":"https://orcid.org/0000-0001-9003-4252"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaolong Wang","raw_affiliation_strings":["Department of Computer Science, Harbin Institute of Technology Shenzhen Guraduate, Shenzhen, Guangdong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Harbin Institute of Technology Shenzhen Guraduate, Shenzhen, Guangdong, China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010253402","display_name":"Yonghui Wu","orcid":"https://orcid.org/0000-0002-6780-6135"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yonghui Wu","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091899643","display_name":"Yaoyun Zhang","orcid":"https://orcid.org/0000-0001-9220-3101"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yaoyun Zhang","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055848133","display_name":"Min Jiang","orcid":"https://orcid.org/0000-0002-1407-0961"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Min Jiang","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101497158","display_name":"Jingqi Wang","orcid":"https://orcid.org/0000-0001-6244-4932"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingqi Wang","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084072550","display_name":"Hua Xu","orcid":"https://orcid.org/0000-0002-5274-4672"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hua Xu","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5084072550","https://openalex.org/A5100424254"],"corresponding_institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213","https://openalex.org/I919571938"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.7543,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.90952567,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"S1","first_page":"S8","last_page":"S8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6926000118255615,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6926000118255615,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.18119999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.052799999713897705,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.8159744143486023},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6849079132080078},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6527214646339417},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5076602697372437},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4307634234428406},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4179234802722931},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3859061002731323},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34070879220962524},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3294241726398468}],"concepts":[{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.8159744143486023},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6849079132080078},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6527214646339417},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5076602697372437},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4307634234428406},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4179234802722931},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3859061002731323},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34070879220962524},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3294241726398468}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1758-2946-7-s1-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-7-s1-s8","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-7-S1-S8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:25810779","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25810779","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3334615","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4331698","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-7-s1-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-7-s1-s8","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-7-S1-S8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1354211108","display_name":null,"funder_award_id":"2011M500669","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1619400379","display_name":null,"funder_award_id":"2011M500669","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G2350075274","display_name":"\u9762\u5411\u771f\u5b9e\u73af\u5883\u7684\u5f02\u6784\u4fe1\u606f\u4ea4\u4e92\u5f0f\u95ee\u7b54\u7406\u8bba\u4e0e\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61272383","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3861605751","display_name":"Recruitment of Recruitment of Rising Stars","funder_award_id":"R1307","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G4223018868","display_name":"\u7f51\u7edc\u4fe1\u606f\u81ea\u4e3b\u6574\u5408\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61173075","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5365831380","display_name":null,"funder_award_id":"JCYJ20120613151940045","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7128034784","display_name":null,"funder_award_id":"61402128","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8102791141","display_name":null,"funder_award_id":"ZDSY20120613125401420","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8523731797","display_name":null,"funder_award_id":"R1307","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2135616521.pdf","grobid_xml":"https://content.openalex.org/works/W2135616521.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W77347155","https://openalex.org/W367043469","https://openalex.org/W1524134026","https://openalex.org/W1555174816","https://openalex.org/W1584739173","https://openalex.org/W1614298861","https://openalex.org/W1934019294","https://openalex.org/W1976892175","https://openalex.org/W1989517911","https://openalex.org/W2018518196","https://openalex.org/W2027233318","https://openalex.org/W2033377040","https://openalex.org/W2047782770","https://openalex.org/W2095444228","https://openalex.org/W2095596879","https://openalex.org/W2101553882","https://openalex.org/W2105842272","https://openalex.org/W2116093010","https://openalex.org/W2121227244","https://openalex.org/W2121244856","https://openalex.org/W2122402213","https://openalex.org/W2127553917","https://openalex.org/W2135505477","https://openalex.org/W2142741334","https://openalex.org/W2144578941","https://openalex.org/W2145870108","https://openalex.org/W2146089916","https://openalex.org/W2147880316","https://openalex.org/W2149369282","https://openalex.org/W2154142897","https://openalex.org/W2162364899","https://openalex.org/W2165671627","https://openalex.org/W2168041406","https://openalex.org/W2703151831","https://openalex.org/W2912026815"],"related_works":["https://openalex.org/W2356597680","https://openalex.org/W2114846443","https://openalex.org/W3102147106","https://openalex.org/W2093471820","https://openalex.org/W2347460059","https://openalex.org/W50079190","https://openalex.org/W2111726165","https://openalex.org/W3151400124","https://openalex.org/W2078793151","https://openalex.org/W2886890203"],"abstract_inverted_index":{"BACKGROUND:":[0],"Chemical":[1,73,88,95],"compounds":[2],"and":[3,64,74,93,141,159,190,227,294],"drugs":[4],"(together":[5],"called":[6],"chemical":[7,31,53],"entities)":[8],"embedded":[9],"in":[10,20],"scientific":[11],"articles":[12],"are":[13,35],"crucial":[14],"for":[15,105,166,170],"many":[16],"information":[17],"extraction":[18],"tasks":[19],"the":[21,41,50,57,106,167,209,216,235,255,262,270,276,282,288,292,298,309,316],"biomedical":[22],"domain.":[23],"However,":[24],"only":[25,312],"a":[26,70,116,125,129,135,142,247],"very":[27],"limited":[28],"number":[29],"of":[30,43,52,67,132,138,145,176,179,203,244,259,261,281,302,315],"entity":[32,54],"recognition":[33,55,91],"systems":[34,104,197,238,268,273,296,310],"publically":[36],"available,":[37],"probably":[38],"due":[39],"to":[40,124,287],"lack":[42],"large":[44],"manually":[45,117],"annotated":[46,118],"corpora.":[47],"To":[48],"accelerate":[49],"development":[51,136],"systems,":[56,152],"Spanish":[58],"National":[59],"Cancer":[60],"Research":[61],"Center":[62],"(CNIO)":[63],"The":[65,80,110,174,201,265],"University":[66],"Navarra":[68],"organized":[69],"challenge":[71,82,113,218],"on":[72,154,192,208],"Drug":[75],"Named":[76],"Entity":[77,89],"Recognition":[78],"(CHEMDNER).":[79],"CHEMDNER":[81,112,217],"contains":[83],"two":[84,194],"individual":[85],"subtasks:":[86],"1)":[87],"Mention":[90],"(CEM);":[92],"2)":[94],"Document":[96],"Indexing":[97],"(CDI).":[98],"Our":[99,230],"study":[100],"proposes":[101],"machine":[102,150,195],"learning-based":[103,151,196],"CEM":[107,168,267,272,289],"task.":[108,290],"METHODS:":[109],"2013":[111],"organizers":[114],"provided":[115,214],"10,000":[119],"UTF8-encoded":[120],"PubMed":[121],"abstracts":[122,140],"according":[123],"predefined":[126],"annotation":[127],"guideline:":[128],"training":[130],"set":[131,137,144,211],"3,500":[133,139],"abstracts,":[134],"test":[143,210],"3,000":[146],"abstracts.":[147],"We":[148],"developed":[149],"based":[153],"conditional":[155],"random":[156,188],"fields":[157],"(CRF)":[158],"structured":[160],"support":[161],"vector":[162],"machines":[163],"(SSVM)":[164],"respectively,":[165],"task":[169],"this":[171],"data":[172],"set.":[173],"effects":[175],"three":[177,300],"types":[178,301],"word":[180],"representation":[181],"(WR)":[182],"features,":[183],"generated":[184],"by":[185,215,250],"Brown":[186],"clustering,":[187],"indexing":[189],"skip-gram,":[191],"both":[193],"were":[198,223],"also":[199],"investigated.":[200],"performance":[202,256,307],"our":[204],"system":[205,232],"was":[206,233,285],"evaluated":[207],"using":[212,275,297,311],"scripts":[213],"organizers.":[219],"Primary":[220],"evaluation":[221],"measures":[222],"micro":[224,242],"Precision,":[225],"Recall,":[226],"F-measure.":[228],"RESULTS:":[229],"best":[231],"among":[234],"top":[236],"ranked":[237],"with":[239],"an":[240],"official":[241],"F-measure":[243,258],"85.05%.":[245],"Fixing":[246],"bug":[248],"caused":[249],"inconsistent":[251],"features":[252,304],"marginally":[253],"improved":[254],"(micro":[257],"85.20%)":[260],"system.":[263],"CONCLUSIONS:":[264],"SSVM-based":[266,295],"outperformed":[269],"CRF-based":[271,293],"when":[274],"same":[277],"features.":[278],"Each":[279],"type":[280,314],"WR":[283,303,317],"feature":[284],"beneficial":[286],"Both":[291],"all":[299],"showed":[305],"better":[306],"than":[308],"one":[313],"feature.":[318]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
