{"id":"https://openalex.org/W2160022416","doi":"https://doi.org/10.1186/1758-2946-7-s1-s4","title":"CHEMDNER system with mixed conditional random fields and multi-scale word clustering","display_name":"CHEMDNER system with mixed conditional random fields and multi-scale word clustering","publication_year":2015,"publication_date":"2015-01-19","ids":{"openalex":"https://openalex.org/W2160022416","doi":"https://doi.org/10.1186/1758-2946-7-s1-s4","mag":"2160022416","pmid":"https://pubmed.ncbi.nlm.nih.gov/25810775"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-7-s1-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-7-s1-s4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-7-S1-S4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-7-S1-S4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069760677","display_name":"Yanan Lu","orcid":"https://orcid.org/0000-0002-1715-7966"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanan Lu","raw_affiliation_strings":["School of Computer, Wuhan University, Wuhan 430072, China","School of Computer, Wuhan University, Wuhan, 430072, China"],"affiliations":[{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan 430072, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan, 430072, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101801149","display_name":"Donghong Ji","orcid":"https://orcid.org/0000-0003-4020-983X"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Donghong Ji","raw_affiliation_strings":["School of Computer, Wuhan University, Wuhan 430072, China","School of Computer, Wuhan University, Wuhan, 430072, China"],"affiliations":[{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan 430072, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan, 430072, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037461463","display_name":"Yao Xiaoyuan","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyuan Yao","raw_affiliation_strings":["School of Computer, Wuhan University, Wuhan 430072, China","School of Computer, Wuhan University, Wuhan, 430072, China"],"affiliations":[{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan 430072, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan, 430072, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058338777","display_name":"Xiaomei Wei","orcid":"https://orcid.org/0000-0002-6744-6707"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaomei Wei","raw_affiliation_strings":["School of Computer, Wuhan University, Wuhan 430072, China","School of Computer, Wuhan University, Wuhan, 430072, China"],"affiliations":[{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan 430072, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of Computer, Wuhan University, Wuhan, 430072, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037727301","display_name":"Xiaohui Liang","orcid":"https://orcid.org/0000-0001-6351-2538"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaohui Liang","raw_affiliation_strings":["School of Public Health, Wuhan University, Wuhan 430072, China","School of Public Health, Wuhan University, Wuhan, 430072, China"],"affiliations":[{"raw_affiliation_string":"School of Public Health, Wuhan University, Wuhan 430072, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"School of Public Health, Wuhan University, Wuhan, 430072, China","institution_ids":["https://openalex.org/I37461747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5037727301"],"corresponding_institution_ids":["https://openalex.org/I37461747"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":3.615,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.93606249,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"7","issue":"S1","first_page":"S4","last_page":"S4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.8781676292419434},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8040224313735962},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7827078700065613},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.7233434319496155},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6296306848526001},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6169576644897461},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5919591188430786},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5718564987182617},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.42531266808509827},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.42381757497787476},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.4226980209350586},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35912424325942993},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07746565341949463}],"concepts":[{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.8781676292419434},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8040224313735962},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7827078700065613},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.7233434319496155},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6296306848526001},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6169576644897461},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5919591188430786},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5718564987182617},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.42531266808509827},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.42381757497787476},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.4226980209350586},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35912424325942993},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07746565341949463},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1758-2946-7-s1-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-7-s1-s4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-7-S1-S4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:25810775","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25810775","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3334611","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4331694","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-7-s1-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-7-s1-s4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-7-S1-S4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5699999928474426,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320324116","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2160022416.pdf","grobid_xml":"https://content.openalex.org/works/W2160022416.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W55204438","https://openalex.org/W130850236","https://openalex.org/W1593271688","https://openalex.org/W1981276685","https://openalex.org/W2045993505","https://openalex.org/W2047782770","https://openalex.org/W2121227244","https://openalex.org/W2123131857","https://openalex.org/W2123512824","https://openalex.org/W2134134392","https://openalex.org/W2135912801","https://openalex.org/W2141099517","https://openalex.org/W2144578941","https://openalex.org/W2145870108","https://openalex.org/W2147880316","https://openalex.org/W2151296343","https://openalex.org/W2153579005","https://openalex.org/W2154142897","https://openalex.org/W2158139315","https://openalex.org/W2158899491","https://openalex.org/W2305617433","https://openalex.org/W2604272474","https://openalex.org/W2740887992","https://openalex.org/W2912026815","https://openalex.org/W2913201579","https://openalex.org/W4300022934","https://openalex.org/W4392051461","https://openalex.org/W6602120790"],"related_works":["https://openalex.org/W4313594223","https://openalex.org/W2063607036","https://openalex.org/W2078793151","https://openalex.org/W3080906831","https://openalex.org/W2787134228","https://openalex.org/W2806114307","https://openalex.org/W3086782256","https://openalex.org/W2886890203","https://openalex.org/W3008870761","https://openalex.org/W3129597052"],"abstract_inverted_index":{"The":[0,34],"mixed":[1],"CRF":[2],"model":[3,17],"represents":[4],"both":[5],"the":[6,13,16,40,43],"internal":[7],"complexity":[8],"and":[9,15,32,51],"external":[10],"contexts":[11],"of":[12,42],"entities,":[14],"is":[18],"integrated":[19],"with":[20,27],"word":[21],"clustering":[22],"to":[23,38],"capture":[24],"domain":[25,35],"knowledge":[26,36],"PubMed":[28],"articles":[29],"including":[30],"titles":[31],"abstracts.":[33],"helps":[37],"ensure":[39],"performance":[41],"entity":[44],"recognition,":[45],"even":[46],"without":[47],"fine-grained":[48],"linguistic":[49],"features":[50],"manually":[52],"designed":[53],"rules.":[54]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":6}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
