{"id":"https://openalex.org/W2109341881","doi":"https://doi.org/10.1186/1758-2946-7-s1-s15","title":"CheNER: a tool for the identification of chemical entities and their classes in biomedical literature","display_name":"CheNER: a tool for the identification of chemical entities and their classes in biomedical literature","publication_year":2015,"publication_date":"2015-01-19","ids":{"openalex":"https://openalex.org/W2109341881","doi":"https://doi.org/10.1186/1758-2946-7-s1-s15","mag":"2109341881","pmid":"https://pubmed.ncbi.nlm.nih.gov/25810772"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-7-s1-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-7-s1-s15","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-7-S1-S15","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-7-S1-S15","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072002693","display_name":"Ana Usi\u00e9","orcid":"https://orcid.org/0000-0002-3364-9434"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Anabel Usi\u00e9","raw_affiliation_strings":["Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298 Lleida, Spain ; Departament d'Inform\u00e0tica i Enginyeria Industrial, Universitat de Lleida, C/Jaume II n\u00ba 69, 25001, Lleida, Spain ; Centro de Biotecnologia Agricola e Agro-Alimentar do Baixo Alentejo (CEBAL), Rua. Pedro Soares s/n, Campus IPBeja, 6158 7801-908 Beja, Portugal","Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298 Lleida, Spain ; Departament d'Inform\u00e0tica i Enginyeria Industrial, Universitat de Lleida, C/Jaume II n\u00ba 69, 25001, Lleida, Spain ; Centro de Biotecnologia Agricola e Agro-Alimentar do Baixo Alentejo (CEBAL), Rua. Pedro Soares s/n, Campus IPBeja, 6158 7801-908 Beja, Portugal","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026012036","display_name":"Joaquim Cruz Corella","orcid":"https://orcid.org/0000-0002-3356-1459"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Joaquim Cruz","raw_affiliation_strings":["Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298 Lleida, Spain","Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298 Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057209620","display_name":"Jorge Comas","orcid":"https://orcid.org/0000-0003-3344-1729"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jorge Comas","raw_affiliation_strings":["Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298 Lleida, Spain","Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298 Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070309620","display_name":"Francesc Solsona","orcid":"https://orcid.org/0000-0002-4830-9184"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Francesc Solsona","raw_affiliation_strings":["Departament d'Inform\u00e0tica i Enginyeria Industrial, Universitat de Lleida, C/Jaume II n\u00ba 69, 25001, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament d'Inform\u00e0tica i Enginyeria Industrial, Universitat de Lleida, C/Jaume II n\u00ba 69, 25001, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020840486","display_name":"Rui Alves","orcid":"https://orcid.org/0000-0002-8112-5184"},"institutions":[{"id":"https://openalex.org/I15766328","display_name":"Universitat de Lleida","ror":"https://ror.org/050c3cw24","country_code":"ES","type":"education","lineage":["https://openalex.org/I15766328"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Rui Alves","raw_affiliation_strings":["Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298 Lleida, Spain","Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298, Lleida, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298 Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]},{"raw_affiliation_string":"Departament Ci\u00e8ncies M\u00e8diques B\u00e0siques, Universitat de Lleida, Av. Rovira Roure n\u00ba 80, 25298, Lleida, Spain","institution_ids":["https://openalex.org/I15766328"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5020840486","https://openalex.org/A5070309620"],"corresponding_institution_ids":["https://openalex.org/I15766328"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":1.2394,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.78830094,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"7","issue":"S1","first_page":"S15","last_page":"S15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9660000205039978,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9660000205039978,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.01730000041425228,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.0038999998942017555,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crfs","display_name":"CRFS","score":0.8690022230148315},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7497782707214355},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.6898933053016663},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.6163654327392578},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5932838916778564},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5686726570129395},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.5033518671989441},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4919254779815674},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4767385721206665},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4705289602279663},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.4472167491912842},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.3210156261920929},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.26036709547042847},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22011658549308777},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.20490887761116028}],"concepts":[{"id":"https://openalex.org/C2775953691","wikidata":"https://www.wikidata.org/wiki/Q5013874","display_name":"CRFS","level":3,"score":0.8690022230148315},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7497782707214355},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.6898933053016663},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.6163654327392578},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5932838916778564},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5686726570129395},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.5033518671989441},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4919254779815674},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4767385721206665},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4705289602279663},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.4472167491912842},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.3210156261920929},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.26036709547042847},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22011658549308777},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.20490887761116028},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1758-2946-7-s1-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-7-s1-s15","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-7-S1-S15","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:25810772","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25810772","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:dnet:raudl_______::b037d6807809f6a463dac31cc6bca714","is_oa":true,"landing_page_url":"http://hdl.handle.net/10459.1/48890","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3334608","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4331691","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-7-s1-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-7-s1-s15","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-7-S1-S15","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5899999737739563}],"awards":[{"id":"https://openalex.org/G2186056989","display_name":null,"funder_award_id":"2009SGR145","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G4998278097","display_name":null,"funder_award_id":"2009SGR809","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G5276543761","display_name":null,"funder_award_id":"TIN2011-28689-C02-02","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G5717413395","display_name":null,"funder_award_id":"TIN2011-28689-C02-02","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G8577748435","display_name":null,"funder_award_id":"BFU2010-17704","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320334830","display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca","ror":"https://ror.org/01n4pqe45"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109341881.pdf","grobid_xml":"https://content.openalex.org/works/W2109341881.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W76749362","https://openalex.org/W77347155","https://openalex.org/W103980920","https://openalex.org/W1524134026","https://openalex.org/W1550258693","https://openalex.org/W2002474413","https://openalex.org/W2003887006","https://openalex.org/W2029213117","https://openalex.org/W2032566933","https://openalex.org/W2033377040","https://openalex.org/W2044453906","https://openalex.org/W2052639933","https://openalex.org/W2085398335","https://openalex.org/W2095596879","https://openalex.org/W2100751507","https://openalex.org/W2101553882","https://openalex.org/W2101727078","https://openalex.org/W2111044246","https://openalex.org/W2115880858","https://openalex.org/W2121244856","https://openalex.org/W2126276057","https://openalex.org/W2130545421","https://openalex.org/W2135505477","https://openalex.org/W2135616521","https://openalex.org/W2136794542","https://openalex.org/W2140611297","https://openalex.org/W2141869602","https://openalex.org/W2142741334","https://openalex.org/W2145870108","https://openalex.org/W2152398020","https://openalex.org/W2165671627","https://openalex.org/W2169491861","https://openalex.org/W2170189740","https://openalex.org/W2171646645","https://openalex.org/W2213189003","https://openalex.org/W2592254793","https://openalex.org/W2916355958"],"related_works":["https://openalex.org/W1964783010","https://openalex.org/W2399696375","https://openalex.org/W2061834489","https://openalex.org/W3088215229","https://openalex.org/W182104056","https://openalex.org/W45206245","https://openalex.org/W50079190","https://openalex.org/W189110383","https://openalex.org/W4250494529","https://openalex.org/W2027233318"],"abstract_inverted_index":{"BACKGROUND:":[0],"Small":[1],"chemical":[2,38,80,96,129,170,182,215,236],"molecules":[3,12,25],"regulate":[4],"biological":[5],"processes":[6],"at":[7,75],"the":[8,34,41,57,147,150,154,189],"molecular":[9],"level.":[10],"Those":[11],"are":[13,47],"often":[14],"involved":[15],"in":[16,26,82,98,131,167,179,217,246],"causing":[17],"or":[18],"treating":[19],"pathological":[20],"states.":[21],"Automatically":[22],"identifying":[23,168,180],"such":[24],"biomedical":[27,83,99,218],"text":[28,247],"is":[29,66,172,184],"difficult":[30],"due":[31],"to":[32,50,94,110,126,203,226,230],"both,":[33],"diverse":[35],"morphology":[36],"of":[37,44,79,113,134,149,191,214],"names":[39,81,130],"and":[40,118,197,244],"alternative":[42,210],"types":[43,78],"nomenclature":[45],"that":[46,73],"simultaneously":[48],"used":[49,225],"describe":[51],"them.":[52],"To":[53,86],"address":[54,87],"these":[55],"issues,":[56],"last":[58],"BioCreAtIvE":[59],"challenge":[60,72,89],"proposed":[61],"a":[62,67,111,123,132,208],"CHEMDNER":[63],"task,":[64],"which":[65],"Named":[68],"Entity":[69],"Recognition":[70],"(NER)":[71],"aims":[74],"labelling":[76],"different":[77],"text.":[84],"METHODS:":[85],"this":[88],"we":[90,165,177],"tested":[91],"various":[92,151],"approaches":[93,102,152],"recognizing":[95],"entities":[97,171,183,216],"documents.":[100,219],"These":[101],"range":[103],"from":[104,201,242],"linear":[105],"Conditional":[106],"Random":[107],"Fields":[108],"(CRFs)":[109],"combination":[112],"CRFs":[114],"with":[115,195],"regular":[116],"expression":[117],"dictionary":[119],"matching,":[120],"followed":[121],"by":[122],"post-processing":[124],"step":[125],"tag":[127],"those":[128],"corpus":[133],"Medline":[135],"abstracts.":[136],"We":[137,145,186],"named":[138],"our":[139,193],"best":[140],"performing":[141],"systems":[142],"CheNER.":[143],"RESULTS:":[144],"evaluate":[146,188],"performance":[148],"using":[153],"F-score":[155,164,176],"statistics.":[156],"Higher":[157],"F-scores":[158],"indicate":[159],"better":[160],"performance.":[161],"The":[162,174],"highest":[163,175],"obtain":[166,178],"unique":[169],"72.88%.":[173],"all":[181],"73.07%.":[185],"also":[187],"F-Score":[190],"combining":[192],"system":[194],"ChemSpot,":[196],"find":[198],"an":[199],"increase":[200],"72.88%":[202],"73.83%.":[204],"CONCLUSIONS:":[205],"CheNER":[206,222,238],"presents":[207],"valid":[209],"for":[211,234],"automated":[212],"annotation":[213,248],"In":[220],"addition,":[221],"may":[223],"be":[224,240],"derive":[227],"new":[228],"features":[229],"train":[231],"newer":[232],"methods":[233],"tagging":[235],"entities.":[237],"can":[239],"downloaded":[241],"http://metres.udl.cat":[243],"included":[245],"pipelines.":[249]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
