{"id":"https://openalex.org/W2058307643","doi":"https://doi.org/10.1186/1758-2946-6-s1-p52","title":"Accessing Open PHACTS: interactive exploration of compounds and targets from the semantic web","display_name":"Accessing Open PHACTS: interactive exploration of compounds and targets from the semantic web","publication_year":2014,"publication_date":"2014-03-01","ids":{"openalex":"https://openalex.org/W2058307643","doi":"https://doi.org/10.1186/1758-2946-6-s1-p52","mag":"2058307643"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-6-s1-p52","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-s1-p52","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-6-S1-P52","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-6-S1-P52","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016538485","display_name":"Katrin Stierand","orcid":"https://orcid.org/0000-0003-3248-8023"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Katrin Stierand","raw_affiliation_strings":["Center for Bioinformatics (ZBH), University of Hamburg, Bundesstr. 43, 20146, Hamburg, Germany","Center for Bioinformatics (ZBH), University of Hamburg, Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics (ZBH), University of Hamburg, Bundesstr. 43, 20146, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Center for Bioinformatics (ZBH), University of Hamburg, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078861338","display_name":"Tim Harder","orcid":null},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim Harder","raw_affiliation_strings":["Center for Bioinformatics (ZBH), University of Hamburg, Bundesstr. 43, 20146, Hamburg, Germany","Center for Bioinformatics (ZBH), University of Hamburg, Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics (ZBH), University of Hamburg, Bundesstr. 43, 20146, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Center for Bioinformatics (ZBH), University of Hamburg, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053823603","display_name":"Lothar Wissler","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lothar Wissler","raw_affiliation_strings":["BioSolveIT GmbH, An der Ziegelei 79, 53757, Sankt Augustin, Germany","BioSolveIT GmbH, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioSolveIT GmbH, An der Ziegelei 79, 53757, Sankt Augustin, Germany","institution_ids":[]},{"raw_affiliation_string":"BioSolveIT GmbH, Sankt Augustin, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087574034","display_name":"Christian Lemmen","orcid":"https://orcid.org/0000-0002-4264-6657"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christian Lemmen","raw_affiliation_strings":["BioSolveIT GmbH, An der Ziegelei 79, 53757, Sankt Augustin, Germany","BioSolveIT GmbH, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioSolveIT GmbH, An der Ziegelei 79, 53757, Sankt Augustin, Germany","institution_ids":[]},{"raw_affiliation_string":"BioSolveIT GmbH, Sankt Augustin, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083205378","display_name":"Matthias Rarey","orcid":"https://orcid.org/0000-0002-9553-6531"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Rarey","raw_affiliation_strings":["Center for Bioinformatics (ZBH), University of Hamburg, Bundesstr. 43, 20146, Hamburg, Germany","Center for Bioinformatics (ZBH), University of Hamburg, Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics (ZBH), University of Hamburg, Bundesstr. 43, 20146, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Center for Bioinformatics (ZBH), University of Hamburg, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11751663,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"6","issue":"S1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7455957531929016},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.618302047252655},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5298507213592529},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42983368039131165},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42602843046188354},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.4200739860534668},{"id":"https://openalex.org/keywords/semantic-web-stack","display_name":"Semantic Web Stack","score":0.2996740937232971}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7455957531929016},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.618302047252655},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5298507213592529},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42983368039131165},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42602843046188354},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.4200739860534668},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.2996740937232971}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/1758-2946-6-s1-p52","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-s1-p52","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-6-S1-P52","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2972160","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3980073","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-6-s1-p52","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-s1-p52","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-6-S1-P52","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2058307643.pdf","grobid_xml":"https://content.openalex.org/works/W2058307643.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W1528439060","https://openalex.org/W2024594931","https://openalex.org/W2084254228"],"related_works":["https://openalex.org/W1542183781","https://openalex.org/W1664821344","https://openalex.org/W933881244","https://openalex.org/W2366430559","https://openalex.org/W2349698472","https://openalex.org/W2359143405","https://openalex.org/W1985801232","https://openalex.org/W78209888","https://openalex.org/W2023110884","https://openalex.org/W2333894209"],"abstract_inverted_index":{"Pharmacological":[0],"research":[1,23,88,248],"is":[2,201,215,224],"hampered":[3],"by":[4,12,98,119,190,203],"scattered":[5],"data":[6,18,48,64,101,205,221,232,257],"which":[7,93,223],"have":[8],"to":[9,60,132],"be":[10,96],"retrieved":[11],"varying":[13],"methods":[14],"and":[15,25,55,58,145,159,171,182,199,212,242,262],"in":[16,65,83,103,167],"different":[17,156],"formats.":[19],"This":[20],"heterogeneity":[21],"increases":[22],"costs":[24],"limits":[26],"throughput.":[27],"Over":[28],"the":[29,33,71,77,84,104,109,114,124,134,207,228,239,251,255,259],"last":[30],"two":[31,160],"years,":[32],"Open":[34,72,135],"PHACTS":[35,73,136],"Discovery":[36,208],"Platform":[37],"[1]":[38],"has":[39,116],"been":[40,117],"developed":[41],"as":[42,111,113,185,187],"a":[43,50,128,140,151,164,244],"centralized":[44],"repository,":[45],"integrating":[46],"pharmacological":[47,66],"from":[49,206,219],"variety":[51],"of":[52,79,86,92,108,150,177,246,253],"information":[53,161,168,218],"resources":[54],"providing":[56],"tools":[57],"services":[59,115],"query":[61],"these":[62,120],"integrated":[63,256],"research.\r\n\r\nFollowing":[67],"an":[68],"application-oriented":[69],"approach,":[70],"project":[74],"started":[75],"with":[76,139,155,217,227],"definition":[78],"potential":[80],"use":[81],"cases":[82],"form":[85],"prioritized":[87],"questions":[89],"[2],":[90],"most":[91],"can":[94],"only":[95],"answered":[97],"accessing":[99],"multiple":[100,220],"sources":[102,222],"web.":[105],"The":[106,195],"development":[107],"platform":[110],"well":[112,186],"guided":[118],"questions.\r\n\r\nHere,":[121],"we":[122,236],"present":[123,243],"ChemBioNavigator":[125],"(CBN)":[126],"[3],":[127],"web":[129],"application":[130],"allowing":[131,163],"navigate":[133],"chem-bio":[137],"space":[138],"focus":[141],"on":[142],"small":[143],"molecules":[144],"their":[146],"targets.":[147,172],"CBN":[148],"comprises":[149],"large":[152],"visualization":[153],"area":[154],"view":[157],"modes":[158],"panels,":[162],"deeper":[165],"insight":[166],"for":[169,230],"compounds":[170,198],"It":[173],"allows":[174],"interactive":[175],"exploration":[176],"compound":[178,211],"sets":[179,189],"through":[180,258],"sorting":[181],"subset":[183],"selection":[184],"extending":[188],"substructure":[191],"or":[192],"similarity":[193],"search.":[194],"relation":[196],"between":[197],"targets":[200],"defined":[202],"assay":[204],"Platform.":[209],"Each":[210],"each":[213,231],"target":[214],"annotated":[216],"provided":[225],"together":[226],"provenance":[229],"point.\r\n\r\nIn":[233],"this":[234],"contribution":[235],"roughly":[237],"outline":[238],"OpenPHACTS/CBN":[240],"technology":[241],"number":[245],"high-priority":[247],"questions,":[249],"highlight":[250],"advantages":[252],"exploiting":[254],"CBN's":[260],"smart":[261],"intuitive":[263],"interface.":[264]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
