{"id":"https://openalex.org/W2088990331","doi":"https://doi.org/10.1186/1758-2946-6-s1-p38","title":"Accelerating turbo similarity searching in chemoinformatics on multicore and GPU platforms","display_name":"Accelerating turbo similarity searching in chemoinformatics on multicore and GPU platforms","publication_year":2014,"publication_date":"2014-03-01","ids":{"openalex":"https://openalex.org/W2088990331","doi":"https://doi.org/10.1186/1758-2946-6-s1-p38","mag":"2088990331"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-6-s1-p38","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-s1-p38","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-S1-P38","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-S1-P38","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078539839","display_name":"Marwah Haitham Al-Laila","orcid":"https://orcid.org/0009-0009-7413-1517"},"institutions":[{"id":"https://openalex.org/I139322472","display_name":"Universiti Sains Malaysia","ror":"https://ror.org/02rgb2k63","country_code":"MY","type":"education","lineage":["https://openalex.org/I139322472"]}],"countries":["MY"],"is_corresponding":true,"raw_author_name":"Marwah Haitham Al Laila","raw_affiliation_strings":["School of Computer Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia","School of Computer Sciences Universiti Sains Malaysia  Penang Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia","institution_ids":["https://openalex.org/I139322472"]},{"raw_affiliation_string":"School of Computer Sciences Universiti Sains Malaysia  Penang Malaysia","institution_ids":["https://openalex.org/I139322472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006203396","display_name":"Nurul Hashimah Ahamed Hassain Malim","orcid":"https://orcid.org/0000-0002-5652-9152"},"institutions":[{"id":"https://openalex.org/I139322472","display_name":"Universiti Sains Malaysia","ror":"https://ror.org/02rgb2k63","country_code":"MY","type":"education","lineage":["https://openalex.org/I139322472"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Nurul Malim","raw_affiliation_strings":["School of Computer Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia","School of Computer Sciences Universiti Sains Malaysia  Penang Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia","institution_ids":["https://openalex.org/I139322472"]},{"raw_affiliation_string":"School of Computer Sciences Universiti Sains Malaysia  Penang Malaysia","institution_ids":["https://openalex.org/I139322472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113090328","display_name":"Nur\u2019Aini Abdul Rashid","orcid":null},"institutions":[{"id":"https://openalex.org/I139322472","display_name":"Universiti Sains Malaysia","ror":"https://ror.org/02rgb2k63","country_code":"MY","type":"education","lineage":["https://openalex.org/I139322472"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Nur\u2019Aini Abdul Rashid","raw_affiliation_strings":["School of Computer Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia","School of Computer Sciences Universiti Sains Malaysia  Penang Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Sciences, Universiti Sains Malaysia, 11800, Penang, Malaysia","institution_ids":["https://openalex.org/I139322472"]},{"raw_affiliation_string":"School of Computer Sciences Universiti Sains Malaysia  Penang Malaysia","institution_ids":["https://openalex.org/I139322472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5078539839"],"corresponding_institution_ids":["https://openalex.org/I139322472"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1295341,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"6","issue":"S1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.8502720594406128},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7848532199859619},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.48483574390411377},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4371480643749237},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3180053234100342},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29213401675224304},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1848866045475006}],"concepts":[{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.8502720594406128},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7848532199859619},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.48483574390411377},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4371480643749237},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3180053234100342},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29213401675224304},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1848866045475006},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/1758-2946-6-s1-p38","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-s1-p38","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-S1-P38","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2972224","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3980191","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-6-s1-p38","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-s1-p38","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-S1-P38","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2088990331.pdf","grobid_xml":"https://content.openalex.org/works/W2088990331.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W1504291959","https://openalex.org/W1990010199","https://openalex.org/W2118464543","https://openalex.org/W2609151348"],"related_works":["https://openalex.org/W2558461359","https://openalex.org/W1542410906","https://openalex.org/W197049984","https://openalex.org/W1993191611","https://openalex.org/W2023938924","https://openalex.org/W2918840249","https://openalex.org/W1991859582","https://openalex.org/W2104702637","https://openalex.org/W2110053126","https://openalex.org/W2316512426"],"abstract_inverted_index":{"The":[0],"increase":[1],"in":[2,13,38,164],"the":[3,21,50,74,89,108,126,141,149,175,209],"database":[4,193],"size":[5],"of":[6,110,145,174],"chemical":[7],"compound":[8],"requires":[9],"a":[10,86,161,170,191,198],"longer":[11],"time":[12],"processing":[14,99],"for":[15,155],"any":[16],"searching":[17,189],"algorithms":[18,133],"[1].":[19],"With":[20],"focus":[22],"on":[23,49,125,134,140,208],"an":[24],"algorithm":[25,46,163],"called":[26,102],"Turbo":[27],"Similarity":[28],"Searching":[29],"which":[30,56,165],"have":[31,35,129],"been":[32],"proven":[33],"to":[34,96,116,152],"good":[36],"accuracy":[37],"retrieving":[39],"actives":[40],"[2],":[41],"we":[42,147],"propose":[43],"that":[44,81],"this":[45,135,179],"be":[47,182,196],"implemented":[48],"widely-used":[51],"many-cores":[52,76],"and":[53,188,206],"multi-cores":[54,90],"processors":[55,77,80,91],"are":[57,78,92],"easily":[58],"available":[59],"at":[60,85],"lower":[61],"cost.":[62],"This":[63,200],"would":[64,185,194],"help":[65],"medicinal":[66],"chemist":[67],"runs":[68],"virtual":[69],"screening":[70],"faster":[71,187],"while":[72],"maintaining":[73],"accuracy.\r\n\r\nThe":[75],"on-chip":[79],"could":[82,181],"run":[83,186],"simultaneously":[84],"clock-cycle.":[87],"Whilst":[88],"originally":[93],"being":[94,101,114],"developed":[95],"support":[97],"graphics":[98],"hence":[100],"Graphics":[103],"Processing":[104],"Unit":[105],"(GPU).":[106],"However,":[107],"usage":[109],"GPU":[111],"is":[112,160,169],"now":[113],"generalized":[115],"include":[117],"other":[118],"general":[119],"purpose":[120],"operation":[121],"[3].":[122],"Many":[123],"works":[124],"parallel":[127],"field":[128],"tried":[130],"implementing":[131],"computational":[132],"unit":[136],"[4].\r\n\r\nTaken":[137],"into":[138],"consideration":[139],"compute":[142,171],"intensive":[143,172],"characteristics":[144],"TSS,":[146],"investigate":[148],"best":[150],"method":[151],"parallelize":[153],"it":[154],"better":[156],"execution":[157],"time.":[158],"TSS":[159,184],"two-phase":[162],"its":[166],"second":[167],"phase":[168,180],"portion":[173],"algorithm.":[176],"Hence,":[177],"if":[178],"accelerated,":[183],"through":[190],"larger":[192],"not":[195],"less":[197],"problem.":[199],"poster":[201],"describes":[202],"our":[203],"experimental":[204],"details":[205],"results":[207],"matter.":[210]},"counts_by_year":[],"updated_date":"2026-08-08T01:25:22.217667","created_date":"2025-10-10T00:00:00"}
