{"id":"https://openalex.org/W2103450324","doi":"https://doi.org/10.1186/1758-2946-6-s1-p33","title":"Scaffold hunter: visual analysis of biological activity data","display_name":"Scaffold hunter: visual analysis of biological activity data","publication_year":2014,"publication_date":"2014-03-01","ids":{"openalex":"https://openalex.org/W2103450324","doi":"https://doi.org/10.1186/1758-2946-6-s1-p33","mag":"2103450324"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-6-s1-p33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-s1-p33","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-6-S1-P33","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-6-S1-P33","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023110492","display_name":"Karsten Klein","orcid":"https://orcid.org/0000-0002-8345-5806"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Karsten Klein","raw_affiliation_strings":["School of Information Technologies, The University of Sydney, Australia","School of Information Technologies, the University of Sydney, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Technologies, The University of Sydney, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"School of Information Technologies, the University of Sydney, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031181726","display_name":"Oliver Koch","orcid":"https://orcid.org/0000-0001-9228-217X"},"institutions":[{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Oliver Koch","raw_affiliation_strings":["Department of Chemistry and Chemical Biology, TU Dortmund, Germany","Department of Chemistry and Chemical Biology, TU Dortmund, , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Chemical Biology, TU Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]},{"raw_affiliation_string":"Department of Chemistry and Chemical Biology, TU Dortmund, , Germany","institution_ids":["https://openalex.org/I200332995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009569829","display_name":"Nils M. Kriege","orcid":"https://orcid.org/0000-0003-2645-947X"},"institutions":[{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nils Kriege","raw_affiliation_strings":["Department of Computer Science, TU Dortmund, Germany","Dept. of Computer Science, TU Dortmund, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, TU Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]},{"raw_affiliation_string":"Dept. of Computer Science, TU Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012801992","display_name":"Petra Mutzel","orcid":"https://orcid.org/0000-0001-7621-971X"},"institutions":[{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Petra Mutzel","raw_affiliation_strings":["Department of Computer Science, TU Dortmund, Germany","Dept. of Computer Science, TU Dortmund, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, TU Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]},{"raw_affiliation_string":"Dept. of Computer Science, TU Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021943398","display_name":"Till Sch\u00e4fer","orcid":"https://orcid.org/0000-0003-1709-1925"},"institutions":[{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Till Sch\u00e4fer","raw_affiliation_strings":["Department of Computer Science, TU Dortmund, Germany","Dept. of Computer Science, TU Dortmund, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, TU Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]},{"raw_affiliation_string":"Dept. of Computer Science, TU Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5031181726"],"corresponding_institution_ids":["https://openalex.org/I200332995"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14570786,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"6","issue":"S1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scaffold","display_name":"Scaffold","score":0.6754423379898071},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5835102796554565},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4022788405418396},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3416200578212738},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.20130646228790283}],"concepts":[{"id":"https://openalex.org/C89429830","wikidata":"https://www.wikidata.org/wiki/Q735710","display_name":"Scaffold","level":2,"score":0.6754423379898071},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5835102796554565},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4022788405418396},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3416200578212738},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.20130646228790283}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/1758-2946-6-s1-p33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-s1-p33","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-6-S1-P33","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2972196","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3980149","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-6-s1-p33","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-s1-p33","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-6-S1-P33","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103450324.pdf","grobid_xml":"https://content.openalex.org/works/W2103450324.grobid-xml"},"referenced_works_count":2,"referenced_works":["https://openalex.org/W1975141043","https://openalex.org/W2028326521"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2087397047","https://openalex.org/W2081717811","https://openalex.org/W2884765235","https://openalex.org/W2695162732","https://openalex.org/W2351880312","https://openalex.org/W3136373005","https://openalex.org/W2349140385","https://openalex.org/W2390279801"],"abstract_inverted_index":{"The":[0,26,78],"growing":[1],"interest":[2],"in":[3],"chemogenomics":[4],"approaches":[5],"over":[6,186],"the":[7,21,69,81,102,120,128,169,175,187,190,207,225,228],"last":[8],"years":[9],"has":[10],"led":[11],"to":[12,35,106,139,153,165,180],"a":[13,36,56,63,123,155],"vast":[14],"amount":[15],"of":[16,28,59,73,83,119,127,149,171,177,198,210,227],"data":[17,84],"regarding":[18],"chemical":[19,30,50],"and":[20,51,75,88,93,111,193,204,213,221],"corresponding":[22],"biological":[23,52],"activity":[24],"space.":[25,53],"discovery":[27,159],"new":[29,57],"entities":[31],"is":[32,152,163,219],"not":[33],"suitable":[34],"fully":[37],"automated":[38],"analysis,":[39],"but":[40],"can":[41],"greatly":[42],"benefit":[43],"from":[44,85],"tools":[45],"that":[46,67,135],"allow":[47],"exploring":[48],"this":[49],"We":[54],"present":[55,194],"version":[58],"Scaffold":[60,150,217],"Hunter":[61,100,151,218],"[1,2],":[62],"highly":[64],"interactive":[65],"tool":[66],"fosters":[68],"systematic":[70],"visual":[71,181],"exploration":[72],"compound":[74],"bioactivity":[76],"data.":[77,121],"software":[79],"supports":[80],"integration":[82],"various":[86,188],"sources":[87],"provides":[89],"several":[90,113],"complementary":[91],"analysis":[92,172,197],"visualization":[94],"modules":[95],"(Figure":[96],"\u200b(Figure11).\r\n\r\n\r\n\r\nFigure":[97],"1\r\n\r\nIterative":[98],"Workflow.\r\n\r\n\r\n\r\nScaffold":[99],"features":[101],"scaffold":[103],"tree":[104],"algorithm":[105],"provide":[107],"hierarchical":[108],"classification":[109],"schemes":[110],"offers":[112],"interconnected":[114],"views":[115],"reflecting":[116],"different":[117],"aspects":[118],"As":[122],"further":[124],"extension":[125],"state":[126],"art":[129],"clustering":[130],"techniques":[131],"are":[132],"now":[133],"included":[134],"allow,":[136],"for":[137],"example,":[138],"create":[140],"subsets":[141],"based":[142],"on":[143],"fingerprint":[144],"similarity.":[145],"A":[146],"key":[147],"concept":[148,192],"support":[154],"cyclic,":[156],"iterative":[157],"knowledge":[158],"process,":[160],"where":[161],"it":[162],"possible":[164],"refine":[166],"subsets,":[167],"adjust":[168],"parameters":[170],"algorithms":[173],"or":[174],"mapping":[176],"property":[178],"values":[179],"attributes.\r\n\r\nWe":[182],"give":[183],"an":[184,195],"overview":[185],"views,":[189],"workflow":[191],"exemplary":[196],"screening":[199],"datasets":[200],"targeting":[201],"T.":[202,205],"cruzi":[203],"brucei,":[206],"causative":[208],"agent":[209],"sleeping":[211],"sickness":[212],"Chagas":[214],"disease,":[215],"respectively.":[216],"platform-independent":[220],"freely":[222],"available":[223],"under":[224],"terms":[226],"GNU":[229],"GPL":[230],"v3":[231],"at":[232],"http://scaffoldhunter.sourceforge.net/.":[233]},"counts_by_year":[],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
