{"id":"https://openalex.org/W2155159115","doi":"https://doi.org/10.1186/1758-2946-6-5","title":"The use of 2D fingerprint methods to support the assessment of structural similarity in orphan drug legislation","display_name":"The use of 2D fingerprint methods to support the assessment of structural similarity in orphan drug legislation","publication_year":2014,"publication_date":"2014-02-01","ids":{"openalex":"https://openalex.org/W2155159115","doi":"https://doi.org/10.1186/1758-2946-6-5","mag":"2155159115","pmid":"https://pubmed.ncbi.nlm.nih.gov/24485002"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-6-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037533479","display_name":"Pedro Franco","orcid":null},"institutions":[{"id":"https://openalex.org/I184903800","display_name":"Environment Agency","ror":"https://ror.org/01zewfb16","country_code":"GB","type":"government","lineage":["https://openalex.org/I1326803253","https://openalex.org/I184903800","https://openalex.org/I2802373619"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Pedro Franco","raw_affiliation_strings":["European Medicines Agency, 7 Westferry Circus, Canary Wharf, London, E14 4HB, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Medicines Agency, 7 Westferry Circus, Canary Wharf, London, E14 4HB, UK","institution_ids":["https://openalex.org/I184903800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074540413","display_name":"N\u00faria Porta","orcid":"https://orcid.org/0000-0003-2458-2167"},"institutions":[{"id":"https://openalex.org/I184903800","display_name":"Environment Agency","ror":"https://ror.org/01zewfb16","country_code":"GB","type":"government","lineage":["https://openalex.org/I1326803253","https://openalex.org/I184903800","https://openalex.org/I2802373619"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nuria Porta","raw_affiliation_strings":["European Medicines Agency, 7 Westferry Circus, Canary Wharf, London, E14 4HB, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Medicines Agency, 7 Westferry Circus, Canary Wharf, London, E14 4HB, UK","institution_ids":["https://openalex.org/I184903800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034861147","display_name":"John D. Holliday","orcid":null},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John D Holliday","raw_affiliation_strings":["Information School, University of Sheffield, 211 Portobello Street, Sheffield, S1 4DP, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information School, University of Sheffield, 211 Portobello Street, Sheffield, S1 4DP, UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102885255","display_name":"Peter Willett","orcid":"https://orcid.org/0000-0003-4591-7173"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Peter Willett","raw_affiliation_strings":["Information School, University of Sheffield, 211 Portobello Street, Sheffield S1 4DP, UK. p.willett@sheffield.ac.uk","Information School, University of Sheffield, 211 Portobello Street, Sheffield, S1 4DP, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information School, University of Sheffield, 211 Portobello Street, Sheffield S1 4DP, UK. p.willett@sheffield.ac.uk","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Information School, University of Sheffield, 211 Portobello Street, Sheffield, S1 4DP, UK","institution_ids":["https://openalex.org/I91136226"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5102885255"],"corresponding_institution_ids":["https://openalex.org/I91136226"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":4.5382,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.95102107,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"6","issue":"1","first_page":"5","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9079999923706055,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9079999923706055,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.007000000216066837,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.007000000216066837,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.8949819207191467},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6452373266220093},{"id":"https://openalex.org/keywords/fingerprint","display_name":"Fingerprint (computing)","score":0.5317246913909912},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5059441924095154},{"id":"https://openalex.org/keywords/european-union","display_name":"European union","score":0.47599947452545166},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4519845247268677},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38591670989990234},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.36999574303627014},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.28723961114883423},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.2660735845565796},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.16064411401748657},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.10655343532562256}],"concepts":[{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.8949819207191467},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6452373266220093},{"id":"https://openalex.org/C2777826928","wikidata":"https://www.wikidata.org/wiki/Q3745713","display_name":"Fingerprint (computing)","level":2,"score":0.5317246913909912},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5059441924095154},{"id":"https://openalex.org/C2910001868","wikidata":"https://www.wikidata.org/wiki/Q458","display_name":"European union","level":2,"score":0.47599947452545166},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4519845247268677},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38591670989990234},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36999574303627014},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.28723961114883423},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.2660735845565796},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.16064411401748657},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.10655343532562256},{"id":"https://openalex.org/C105639569","wikidata":"https://www.wikidata.org/wiki/Q582577","display_name":"Economic policy","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1758-2946-6-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:24485002","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24485002","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:eprints.whiterose.ac.uk:77932","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:2925610","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3923256","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3923256","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3923256","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-6-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5899999737739563,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2155159115.pdf","grobid_xml":"https://content.openalex.org/works/W2155159115.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W129635239","https://openalex.org/W132296830","https://openalex.org/W1968217405","https://openalex.org/W1970577443","https://openalex.org/W1976559722","https://openalex.org/W1981194927","https://openalex.org/W1984518758","https://openalex.org/W1988037271","https://openalex.org/W1989779568","https://openalex.org/W1989897839","https://openalex.org/W1991546151","https://openalex.org/W2000123759","https://openalex.org/W2002694017","https://openalex.org/W2019375534","https://openalex.org/W2023040612","https://openalex.org/W2032012623","https://openalex.org/W2040030948","https://openalex.org/W2054519060","https://openalex.org/W2054716083","https://openalex.org/W2064576005","https://openalex.org/W2074170906","https://openalex.org/W2075028158","https://openalex.org/W2077204318","https://openalex.org/W2085809352","https://openalex.org/W2087661061","https://openalex.org/W2091515885","https://openalex.org/W2117996566","https://openalex.org/W2119910794","https://openalex.org/W2137052779","https://openalex.org/W2139731838","https://openalex.org/W3083116277","https://openalex.org/W4245915609"],"related_works":["https://openalex.org/W2365158734","https://openalex.org/W2009313526","https://openalex.org/W2465211533","https://openalex.org/W2157969515","https://openalex.org/W2137827821","https://openalex.org/W129624489","https://openalex.org/W4387804095","https://openalex.org/W2767891136","https://openalex.org/W4388615774","https://openalex.org/W2137052779"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"the":[2,30,37,40,56,71,91,102,132,139,158,169,173,183,205],"European":[3,159,184],"Union,":[4],"medicines":[5,156],"are":[6,15],"authorised":[7,21],"for":[8,24,48,77,204],"some":[9],"rare":[10],"disease":[11],"only":[12],"if":[13],"they":[14],"judged":[16],"to":[17,20,35,67,70,157],"be":[18,65],"dissimilar":[19],"orphan":[22,79,154,208],"drugs":[23],"that":[25],"disease.":[26],"This":[27],"paper":[28],"describes":[29],"use":[31],"of":[32,39,45,50,55,58,73,90,95,98,108,153,190,202,207],"2D":[33,122,195],"fingerprints":[34,164,179,196],"show":[36],"extent":[38],"relationship":[41,63,130],"between":[42,131],"computed":[43,113,135],"levels":[44],"structural":[46,191],"similarity":[47,92,136,192],"pairs":[49,97,110],"molecules":[51,100],"and":[52,120,134,177],"expert":[53],"judgments":[54,89],"similarities":[57,107],"those":[59],"pairs.":[60],"The":[61,106,162],"resulting":[62,140],"can":[64,197],"used":[66],"provide":[68,198],"input":[69],"assessment":[72,206],"new":[74],"active":[75],"compounds":[76],"which":[78],"drug":[80,155,209],"authorisation":[81],"is":[82],"being":[83],"sought.":[84],"RESULTS:":[85],"143":[86],"experts":[87],"provided":[88],"or":[93],"dissimilarity":[94],"100":[96],"drug-like":[99],"from":[101,151],"DrugBank":[103,170],"3.0":[104],"database.":[105],"these":[109],"were":[111],"also":[112],"using":[114,149],"BCI,":[115,174],"Daylight,":[116,175],"ECFC4,":[117],"ECFP4,":[118],"MDL":[119],"Unity":[121,178],"fingerprints.":[123],"Logistic":[124],"regression":[125,141],"analyses":[126],"demonstrated":[127],"a":[128,199],"strong":[129],"human":[133],"assessments,":[137],"with":[138],"models":[142],"having":[143],"significant":[144],"predictive":[145],"power":[146],"in":[147],"experiments":[148],"data":[150],"submissions":[152],"Medicines":[160,185],"Agency.":[161],"BCI":[163],"performed":[165,180],"best":[166],"overall":[167],"on":[168,182,194],"dataset":[171],"while":[172],"ECFP4":[176],"comparably":[181],"Agency":[186],"dataset.":[187],"CONCLUSIONS:":[188],"Measures":[189],"based":[193],"useful":[200],"source":[201],"information":[203],"status":[210],"by":[211],"regulatory":[212],"authorities.":[213]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
