{"id":"https://openalex.org/W2166468803","doi":"https://doi.org/10.1186/1758-2946-6-17","title":"Chemical named entities recognition: a review on approaches and applications","display_name":"Chemical named entities recognition: a review on approaches and applications","publication_year":2014,"publication_date":"2014-04-28","ids":{"openalex":"https://openalex.org/W2166468803","doi":"https://doi.org/10.1186/1758-2946-6-17","mag":"2166468803","pmid":"https://pubmed.ncbi.nlm.nih.gov/24834132"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-6-17","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-17","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-17","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-17","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026816143","display_name":"Safaa Eltyeb","orcid":null},"institutions":[{"id":"https://openalex.org/I4576418","display_name":"University of Technology Malaysia","ror":"https://ror.org/026w31v75","country_code":"MY","type":"education","lineage":["https://openalex.org/I4576418"]},{"id":"https://openalex.org/I9353105","display_name":"Sudan University of Science and Technology","ror":"https://ror.org/02fwtg066","country_code":"SD","type":"education","lineage":["https://openalex.org/I9353105"]}],"countries":["MY","SD"],"is_corresponding":false,"raw_author_name":"Safaa Eltyeb","raw_affiliation_strings":["Faculty of Computing, Universiti Teknologi Malaysia, Johor, Malaysia ; College of Computer Science and Information Technology, Sudan University of Science and Technology, Khartoum, Sudan","Faculty of Computing, Universiti Teknologi Malaysia, Johor, Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Computing, Universiti Teknologi Malaysia, Johor, Malaysia ; College of Computer Science and Information Technology, Sudan University of Science and Technology, Khartoum, Sudan","institution_ids":["https://openalex.org/I4576418","https://openalex.org/I9353105"]},{"raw_affiliation_string":"Faculty of Computing, Universiti Teknologi Malaysia, Johor, Malaysia","institution_ids":["https://openalex.org/I4576418"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012641332","display_name":"Naomie Salim","orcid":"https://orcid.org/0000-0001-8509-3055"},"institutions":[{"id":"https://openalex.org/I4576418","display_name":"University of Technology Malaysia","ror":"https://ror.org/026w31v75","country_code":"MY","type":"education","lineage":["https://openalex.org/I4576418"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Naomie Salim","raw_affiliation_strings":["Faculty of Computing, Universiti Teknologi Malaysia, Johor, Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Computing, Universiti Teknologi Malaysia, Johor, Malaysia","institution_ids":["https://openalex.org/I4576418"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":4.4186,"has_fulltext":true,"cited_by_count":129,"citation_normalized_percentile":{"value":0.95649409,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"6","issue":"1","first_page":"17","last_page":"17"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7885076403617859},{"id":"https://openalex.org/keywords/sketch","display_name":"Sketch","score":0.7103438377380371},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.5117397308349609},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.46858614683151245},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.44849419593811035},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44179320335388184},{"id":"https://openalex.org/keywords/chemical-database","display_name":"Chemical database","score":0.43227821588516235},{"id":"https://openalex.org/keywords/scientific-literature","display_name":"Scientific literature","score":0.42301779985427856},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3335224986076355},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3324894309043884},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.18082767724990845}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7885076403617859},{"id":"https://openalex.org/C2779231336","wikidata":"https://www.wikidata.org/wiki/Q7534724","display_name":"Sketch","level":2,"score":0.7103438377380371},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.5117397308349609},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46858614683151245},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.44849419593811035},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44179320335388184},{"id":"https://openalex.org/C203394866","wikidata":"https://www.wikidata.org/wiki/Q2881060","display_name":"Chemical database","level":2,"score":0.43227821588516235},{"id":"https://openalex.org/C2781083858","wikidata":"https://www.wikidata.org/wiki/Q17327049","display_name":"Scientific literature","level":2,"score":0.42301779985427856},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3335224986076355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3324894309043884},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.18082767724990845},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1758-2946-6-17","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-17","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-17","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:24834132","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24834132","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2999447","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC4022577","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4022577","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4022577","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-6-17","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-17","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-17","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1001717021","display_name":null,"funder_award_id":"J130000","funder_id":"https://openalex.org/F4320323300","funder_display_name":"Universiti Teknologi Malaysia"},{"id":"https://openalex.org/G8700759374","display_name":null,"funder_award_id":"R.J130000","funder_id":"https://openalex.org/F4320323300","funder_display_name":"Universiti Teknologi Malaysia"}],"funders":[{"id":"https://openalex.org/F4320323300","display_name":"Universiti Teknologi Malaysia","ror":"https://ror.org/026w31v75"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166468803.pdf","grobid_xml":"https://content.openalex.org/works/W2166468803.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W77347155","https://openalex.org/W103980920","https://openalex.org/W104426851","https://openalex.org/W171093852","https://openalex.org/W173617392","https://openalex.org/W189110383","https://openalex.org/W189514790","https://openalex.org/W886998232","https://openalex.org/W1497319365","https://openalex.org/W1505083828","https://openalex.org/W1520377376","https://openalex.org/W1524134026","https://openalex.org/W1532940542","https://openalex.org/W1583031633","https://openalex.org/W1595961126","https://openalex.org/W1934019294","https://openalex.org/W1966238518","https://openalex.org/W1995205683","https://openalex.org/W1997201617","https://openalex.org/W1999527988","https://openalex.org/W1999966958","https://openalex.org/W2008085355","https://openalex.org/W2011726136","https://openalex.org/W2032729847","https://openalex.org/W2042711932","https://openalex.org/W2045993505","https://openalex.org/W2049240985","https://openalex.org/W2062166730","https://openalex.org/W2083412062","https://openalex.org/W2087728643","https://openalex.org/W2095194069","https://openalex.org/W2095596879","https://openalex.org/W2097960255","https://openalex.org/W2101553882","https://openalex.org/W2104091251","https://openalex.org/W2111044246","https://openalex.org/W2115251736","https://openalex.org/W2115964835","https://openalex.org/W2116231552","https://openalex.org/W2118257691","https://openalex.org/W2118832478","https://openalex.org/W2120895813","https://openalex.org/W2121244856","https://openalex.org/W2124260644","https://openalex.org/W2127239015","https://openalex.org/W2131010894","https://openalex.org/W2133208308","https://openalex.org/W2135505477","https://openalex.org/W2136038431","https://openalex.org/W2136796599","https://openalex.org/W2138689719","https://openalex.org/W2146952425","https://openalex.org/W2147880316","https://openalex.org/W2152454589","https://openalex.org/W2159335058","https://openalex.org/W2160592517","https://openalex.org/W2163107094","https://openalex.org/W2169986726","https://openalex.org/W2171646645","https://openalex.org/W2213189003","https://openalex.org/W2236252949","https://openalex.org/W2295000399","https://openalex.org/W2322181349","https://openalex.org/W2395668008","https://openalex.org/W2505803889","https://openalex.org/W2914933231","https://openalex.org/W3142340468","https://openalex.org/W3209232848","https://openalex.org/W4255086355","https://openalex.org/W6662745520"],"related_works":["https://openalex.org/W2153037537","https://openalex.org/W3143892890","https://openalex.org/W2317928565","https://openalex.org/W2561309435","https://openalex.org/W2185159477","https://openalex.org/W2903373627","https://openalex.org/W2066666235","https://openalex.org/W158734140","https://openalex.org/W2127121938","https://openalex.org/W164221359"],"abstract_inverted_index":{"The":[0,30],"rapid":[1],"increase":[2],"in":[3,11,16,68,77,88,117],"the":[4,25,50,73,82,89,94,98,105,112,146,154],"flow":[5],"rate":[6],"of":[7,27,72,84,101,108,114,150,156],"published":[8],"digital":[9],"information":[10,37],"all":[12],"disciplines":[13],"has":[14],"resulted":[15],"a":[17],"pressing":[18],"need":[19],"for":[20],"techniques":[21],"that":[22],"can":[23],"simplify":[24],"use":[26],"this":[28,92],"information.":[29],"chemistry":[31],"literature":[32,52,103],"is":[33,81],"very":[34],"rich":[35],"with":[36,136,142],"about":[38],"chemical":[39,78,85,102,109,131,157],"entities.":[40],"Extracting":[41],"molecules":[42],"and":[43,47,59,111,124,148,153],"their":[44,137],"related":[45],"properties":[46],"activities":[48],"from":[49],"scientific":[51],"to":[53],"\"text":[54],"mine\"":[55],"these":[56,151],"extracted":[57],"data":[58],"determine":[60],"contextual":[61],"relationships":[62],"helps":[63],"research":[64],"scientists,":[65],"particularly":[66],"those":[67],"drug":[69],"development.":[70],"One":[71],"most":[74],"important":[75],"challenges":[76],"text":[79],"mining":[80],"recognition":[83,134],"entities":[86,158],"mentioned":[87],"texts.":[90],"In":[91],"review,":[93],"authors":[95],"briefly":[96],"introduce":[97],"fundamental":[99],"concepts":[100],"mining,":[104],"textual":[106],"contents":[107],"documents,":[110],"methods":[113],"naming":[115],"chemicals":[116],"documents.":[118],"We":[119,140],"sketch":[120],"out":[121],"dictionary-based,":[122],"rule-based":[123],"machine":[125],"learning,":[126],"as":[127,129],"well":[128],"hybrid":[130],"named":[132],"entity":[133],"approaches":[135,152],"applied":[138],"solutions.":[139],"end":[141],"an":[143],"outlook":[144],"on":[145],"pros":[147],"cons":[149],"types":[155],"extracted.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":11}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
