{"id":"https://openalex.org/W2017222169","doi":"https://doi.org/10.1186/1758-2946-6-1","title":"Prediction of novel drug indications using network driven biological data prioritization and integration","display_name":"Prediction of novel drug indications using network driven biological data prioritization and integration","publication_year":2014,"publication_date":"2014-01-07","ids":{"openalex":"https://openalex.org/W2017222169","doi":"https://doi.org/10.1186/1758-2946-6-1","mag":"2017222169","pmid":"https://pubmed.ncbi.nlm.nih.gov/24397863"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-6-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005554705","display_name":"Ala Qabaja","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]},{"id":"https://openalex.org/I17533244","display_name":"An-Najah National University","ror":"https://ror.org/0046mja08","country_code":"PS","type":"education","lineage":["https://openalex.org/I17533244"]}],"countries":["CA","PS"],"is_corresponding":false,"raw_author_name":"Ala Qabaja","raw_affiliation_strings":["Biotechnology Department, An-Najah University, Nablus, Palestine","Department of Computer Science, University of Calgary, Calgary, Alberta, Canada","Department of Computer Science, University of Calgary, Calgary, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Department, An-Najah University, Nablus, Palestine","institution_ids":["https://openalex.org/I17533244"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032201078","display_name":"Mohammed Alshalalfa","orcid":"https://orcid.org/0000-0001-8405-3035"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]},{"id":"https://openalex.org/I37417134","display_name":"Palestine Polytechnic University","ror":"https://ror.org/03wwspn40","country_code":"PS","type":"education","lineage":["https://openalex.org/I37417134"]}],"countries":["CA","PS"],"is_corresponding":true,"raw_author_name":"Mohammed Alshalalfa","raw_affiliation_strings":["Department of Computer Science, University of Calgary, Calgary, Alberta, Canada. msalshal@ucalgary.ca","Biotechnology Research Center, Palestine Polytechnic University, Hebron, Palestine","Department of Computer Science, University of Calgary, Calgary, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Calgary, Alberta, Canada. msalshal@ucalgary.ca","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Biotechnology Research Center, Palestine Polytechnic University, Hebron, Palestine","institution_ids":["https://openalex.org/I37417134"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019463429","display_name":"Eisa Alanazi","orcid":"https://orcid.org/0000-0002-5560-1116"},"institutions":[{"id":"https://openalex.org/I194028371","display_name":"University of Regina","ror":"https://ror.org/03dzc0485","country_code":"CA","type":"education","lineage":["https://openalex.org/I194028371"]},{"id":"https://openalex.org/I199693650","display_name":"Umm al-Qura University","ror":"https://ror.org/01xjqrm90","country_code":"SA","type":"education","lineage":["https://openalex.org/I199693650"]}],"countries":["CA","SA"],"is_corresponding":false,"raw_author_name":"Eisa Alanazi","raw_affiliation_strings":["Department of Computer Science, Umm Al-Qura University, Makkah, Saudi Arabia","Department of Computer Science, University of Regina, Regina, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Umm Al-Qura University, Makkah, Saudi Arabia","institution_ids":["https://openalex.org/I199693650"]},{"raw_affiliation_string":"Department of Computer Science, University of Regina, Regina, Canada","institution_ids":["https://openalex.org/I194028371"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066265052","display_name":"Reda Alhajj","orcid":"https://orcid.org/0000-0001-6657-9738"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]},{"id":"https://openalex.org/I904090387","display_name":"Global University","ror":"https://ror.org/04frhb927","country_code":"LB","type":"education","lineage":["https://openalex.org/I904090387"]}],"countries":["CA","LB"],"is_corresponding":false,"raw_author_name":"Reda Alhajj","raw_affiliation_strings":["Computer Science Department, Global University, Beirut, Lebanon","Department of Computer Science, University of Calgary, Calgary, Alberta, Canada","Department of Computer Science, University of Calgary, Calgary, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Global University, Beirut, Lebanon","institution_ids":["https://openalex.org/I904090387"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]},{"raw_affiliation_string":"Department of Computer Science, University of Calgary, Calgary, Canada","institution_ids":["https://openalex.org/I168635309"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5032201078"],"corresponding_institution_ids":["https://openalex.org/I168635309","https://openalex.org/I37417134"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":1011,"currency":"EUR","value_usd":1090},"fwci":2.2098,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.87890106,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"6","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5019000172615051,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5019000172615051,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.4449000060558319,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.024299999698996544,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7356141805648804},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.6757262945175171},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5796202421188354},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4837241470813751},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46930789947509766},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4339458644390106},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.34778067469596863},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.16092926263809204},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.1288650929927826},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1178111732006073},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09125497937202454}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7356141805648804},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.6757262945175171},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5796202421188354},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4837241470813751},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46930789947509766},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4339458644390106},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.34778067469596863},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.16092926263809204},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.1288650929927826},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1178111732006073},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09125497937202454}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1758-2946-6-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:24397863","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24397863","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2898038","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3896815","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-6-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-6-1","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-6-1","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320325651","display_name":"Alberta Innovates","ror":null},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2017222169.pdf","grobid_xml":"https://content.openalex.org/works/W2017222169.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1969279156","https://openalex.org/W1983227527","https://openalex.org/W2004611770","https://openalex.org/W2011169797","https://openalex.org/W2018408116","https://openalex.org/W2031950862","https://openalex.org/W2036071774","https://openalex.org/W2047936140","https://openalex.org/W2057545775","https://openalex.org/W2058539819","https://openalex.org/W2061016350","https://openalex.org/W2066601577","https://openalex.org/W2075897300","https://openalex.org/W2076372398","https://openalex.org/W2084294502","https://openalex.org/W2093313266","https://openalex.org/W2094791588","https://openalex.org/W2098607364","https://openalex.org/W2099656145","https://openalex.org/W2109972881","https://openalex.org/W2113072832","https://openalex.org/W2114588554","https://openalex.org/W2116298046","https://openalex.org/W2120850582","https://openalex.org/W2121175754","https://openalex.org/W2121604817","https://openalex.org/W2125910575","https://openalex.org/W2130410032","https://openalex.org/W2133709539","https://openalex.org/W2137052779","https://openalex.org/W2137632714","https://openalex.org/W2151635781","https://openalex.org/W2157795344","https://openalex.org/W2160198684","https://openalex.org/W2161604082","https://openalex.org/W2168264491","https://openalex.org/W4294107304"],"related_works":["https://openalex.org/W2506292322","https://openalex.org/W4283209547","https://openalex.org/W4367627632","https://openalex.org/W2184980933","https://openalex.org/W653452717","https://openalex.org/W2554445088","https://openalex.org/W2335661150","https://openalex.org/W1595456161","https://openalex.org/W2621003306","https://openalex.org/W2466517183"],"abstract_inverted_index":{"BACKGROUND:":[0],"With":[1],"the":[2,10,22,38,44,167],"rapid":[3],"development":[4],"of":[5,12,24,40,60,171],"high-throughput":[6],"genomic":[7],"technologies":[8],"and":[9,19,26,68,94,105,109,114,121,131,147,155],"accumulation":[11],"genome-wide":[13],"datasets":[14,67],"for":[15],"gene":[16,29,64,128,164],"expression":[17,30,65,129],"profiling":[18,66,130],"biological":[20,69],"networks,":[21],"impact":[23],"diseases":[25,156],"drugs":[27,146,154],"on":[28],"can":[31],"be":[32],"comprehensively":[33],"characterized.":[34],"Drug":[35],"repositioning":[36,77],"offers":[37],"possibility":[39],"reduced":[41],"risks":[42],"in":[43,54,75,112,163],"drug":[45,55,76,104,115,120,172],"discovery":[46],"process,":[47],"thus":[48],"it":[49],"is":[50,71,166],"an":[51],"essential":[52],"step":[53],"development.":[56],"RESULTS:":[57],"Computational":[58],"prediction":[59],"drug-disease":[61],"interactions":[62],"using":[63,92,127],"networks":[70,91,101,126,165],"a":[72,85,135],"new":[73],"direction":[74],"that":[78,152],"has":[79],"gained":[80],"increasing":[81],"interest.":[82],"We":[83,150],"developed":[84],"computational":[86],"framework":[87,98],"to":[88,102,141],"build":[89,142],"disease-drug":[90],"drug-":[93],"disease-specific":[95],"subnetworks.":[96,175],"The":[97],"incorporates":[99],"protein":[100],"refine":[103],"disease":[106,113,122,174],"associated":[107],"genes":[108,111,158],"prioritize":[110],"specific":[116],"networks.":[117],"For":[118],"each":[119],"we":[123],"built":[124],"multiple":[125],"text":[132],"mining.":[133],"Finally":[134],"logistic":[136],"regression":[137],"model":[138],"was":[139],"used":[140],"functional":[143],"associations":[144],"between":[145],"diseases.":[148],"CONCLUSIONS:":[149],"found":[151],"representing":[153],"by":[157],"with":[159],"high":[160],"centrality":[161],"degree":[162],"most":[168],"promising":[169],"representation":[170],"or":[173]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
