{"id":"https://openalex.org/W2007430225","doi":"https://doi.org/10.1186/1758-2946-5-35","title":"Rubabel: wrapping open Babel with Ruby","display_name":"Rubabel: wrapping open Babel with Ruby","publication_year":2013,"publication_date":"2013-07-24","ids":{"openalex":"https://openalex.org/W2007430225","doi":"https://doi.org/10.1186/1758-2946-5-35","mag":"2007430225","pmid":"https://pubmed.ncbi.nlm.nih.gov/23883475"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-5-35","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-5-35","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-35","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-35","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046228650","display_name":"Rob Smith","orcid":"https://orcid.org/0000-0002-1864-9110"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rob Smith","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, Utah, USA. 2robsmith@gmail.com","Department of Computer Science, Brigham Young University, Provo, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, Utah, USA. 2robsmith@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, USA#TAB#","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006787876","display_name":"Ryan C. Williamson","orcid":"https://orcid.org/0000-0001-9558-9513"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan Williamson","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, Utah, USA","Department of Computer Science, Brigham Young University, Provo, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, Utah, USA","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, USA#TAB#","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064318273","display_name":"Dan Ventura","orcid":"https://orcid.org/0000-0002-3111-2238"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dan Ventura","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, Utah, USA","Department of Computer Science, Brigham Young University, Provo, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, Utah, USA","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, USA#TAB#","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041650906","display_name":"John T. Prince","orcid":"https://orcid.org/0000-0001-9820-4252"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John T Prince","raw_affiliation_strings":["Department of Chemistry, Brigham Young University, Provo, Utah, USA","Department of Chemistry, Brigham Young University, Provo, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Brigham Young University, Provo, Utah, USA","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Department of Chemistry, Brigham Young University, Provo, USA","institution_ids":["https://openalex.org/I100005738"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046228650"],"corresponding_institution_ids":["https://openalex.org/I100005738"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":5.9246,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.95812461,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"5","issue":"1","first_page":"35","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9379000067710876,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8225535750389099},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.7754033803939819},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5962046980857849},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5902780890464783},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.563601016998291},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5552112460136414},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5283428430557251},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4603244364261627},{"id":"https://openalex.org/keywords/object","display_name":"Object (grammar)","score":0.45344358682632446},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4149087965488434},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4147747755050659},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.2162199318408966},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20476925373077393},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.14900916814804077},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13232475519180298}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8225535750389099},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.7754033803939819},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5962046980857849},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5902780890464783},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.563601016998291},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5552112460136414},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5283428430557251},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4603244364261627},{"id":"https://openalex.org/C2781238097","wikidata":"https://www.wikidata.org/wiki/Q175026","display_name":"Object (grammar)","level":2,"score":0.45344358682632446},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4149087965488434},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4147747755050659},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.2162199318408966},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20476925373077393},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.14900916814804077},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13232475519180298},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1758-2946-5-35","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-5-35","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-35","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:23883475","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23883475","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2726844","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3733738","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-5-35","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-5-35","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-35","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.5699999928474426}],"awards":[{"id":"https://openalex.org/G317954811","display_name":"Graduate Research Fellowship Program","funder_award_id":"0750759","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2007430225.pdf","grobid_xml":"https://content.openalex.org/works/W2007430225.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1988598882","https://openalex.org/W1989405983","https://openalex.org/W2045873232","https://openalex.org/W2108987487","https://openalex.org/W2110001365","https://openalex.org/W2114326383","https://openalex.org/W2128567635","https://openalex.org/W2169678694"],"related_works":["https://openalex.org/W2235766367","https://openalex.org/W1582950852","https://openalex.org/W1852679760","https://openalex.org/W2976477659","https://openalex.org/W2529681551","https://openalex.org/W2086733238","https://openalex.org/W1537913012","https://openalex.org/W2114326383","https://openalex.org/W4250110356","https://openalex.org/W2560829062"],"abstract_inverted_index":{"Rubabel":[0],"is":[1],"powerful,":[2],"intuitive,":[3],"concise,":[4],"freely":[5],"available,":[6],"cross-platform,":[7],"and":[8,26],"easy":[9],"to":[10,15],"install.":[11],"We":[12],"expect":[13],"it":[14],"be":[16],"a":[17],"platform":[18],"of":[19,29],"choice":[20],"for":[21],"new":[22],"users,":[23,25],"Ruby":[24],"some":[27],"users":[28],"current":[30],"solutions.":[31]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
