{"id":"https://openalex.org/W2120869341","doi":"https://doi.org/10.1186/1758-2946-5-24","title":"JSME: a free molecule editor in JavaScript","display_name":"JSME: a free molecule editor in JavaScript","publication_year":2013,"publication_date":"2013-05-21","ids":{"openalex":"https://openalex.org/W2120869341","doi":"https://doi.org/10.1186/1758-2946-5-24","mag":"2120869341","pmid":"https://pubmed.ncbi.nlm.nih.gov/23694746"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-5-24","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-5-24","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-24","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-24","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040455211","display_name":"Bruno Bienfait","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142871","display_name":"Molecular Networks (Germany)","ror":"https://ror.org/04rtnbn65","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210142871"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Bruno Bienfait","raw_affiliation_strings":["Molecular Networks GmbH, Henkestrasse 91, Erlangen, D-91052, Germany","Molecular Networks GmbH, Erlangen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Networks GmbH, Henkestrasse 91, Erlangen, D-91052, Germany","institution_ids":[]},{"raw_affiliation_string":"Molecular Networks GmbH, Erlangen, Germany","institution_ids":["https://openalex.org/I4210142871"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025468315","display_name":"Peter Ertl","orcid":"https://orcid.org/0000-0001-6496-4448"},"institutions":[{"id":"https://openalex.org/I1283582996","display_name":"Novartis (Switzerland)","ror":"https://ror.org/02f9zrr09","country_code":"CH","type":"company","lineage":["https://openalex.org/I1283582996"]},{"id":"https://openalex.org/I4400600974","display_name":"Novartis Institutes for BioMedical Research","ror":"https://ror.org/053gv2m95","country_code":null,"type":"funder","lineage":["https://openalex.org/I1283582996","https://openalex.org/I4400600974"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Peter Ertl","raw_affiliation_strings":["Novartis Institutes for BioMedical Research, Novartis Campus, Basel, CH-4056, Switzerland","Novartis Institutes for Biomedical Research, Basel,  Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Novartis Institutes for BioMedical Research, Novartis Campus, Basel, CH-4056, Switzerland","institution_ids":["https://openalex.org/I1283582996","https://openalex.org/I4400600974"]},{"raw_affiliation_string":"Novartis Institutes for Biomedical Research, Basel,  Switzerland","institution_ids":["https://openalex.org/I1283582996","https://openalex.org/I4400600974"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5040455211"],"corresponding_institution_ids":["https://openalex.org/I4210142871"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":11.9156,"has_fulltext":true,"cited_by_count":316,"citation_normalized_percentile":{"value":0.98948235,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"5","issue":"1","first_page":"24","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.21209999918937683,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.21209999918937683,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.09430000185966492,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.05310000106692314,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8356835842132568},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.7645933628082275},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6042087078094482},{"id":"https://openalex.org/keywords/java-applet","display_name":"Java applet","score":0.6026251316070557},{"id":"https://openalex.org/keywords/undo","display_name":"Undo","score":0.5501061081886292},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.540979266166687},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5329360365867615},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.5120894908905029},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.4687260389328003},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.46678125858306885},{"id":"https://openalex.org/keywords/android","display_name":"Android (operating system)","score":0.4105478525161743},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.29056787490844727},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.17550262808799744}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8356835842132568},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.7645933628082275},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6042087078094482},{"id":"https://openalex.org/C15524039","wikidata":"https://www.wikidata.org/wiki/Q865817","display_name":"Java applet","level":3,"score":0.6026251316070557},{"id":"https://openalex.org/C2780154230","wikidata":"https://www.wikidata.org/wiki/Q513420","display_name":"Undo","level":2,"score":0.5501061081886292},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.540979266166687},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5329360365867615},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.5120894908905029},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.4687260389328003},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.46678125858306885},{"id":"https://openalex.org/C557433098","wikidata":"https://www.wikidata.org/wiki/Q94","display_name":"Android (operating system)","level":2,"score":0.4105478525161743},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.29056787490844727},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.17550262808799744}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1758-2946-5-24","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-5-24","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-24","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:23694746","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23694746","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2658031","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3662632","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3662632","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3662632","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-5-24","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-5-24","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-24","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120869341.pdf","grobid_xml":"https://content.openalex.org/works/W2120869341.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2048620093","https://openalex.org/W2062866883","https://openalex.org/W2063645180","https://openalex.org/W2091159078","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2115968517","https://openalex.org/W79743612","https://openalex.org/W2575202322","https://openalex.org/W1038420441","https://openalex.org/W2158967736","https://openalex.org/W2170927537","https://openalex.org/W2081448291","https://openalex.org/W3146554993","https://openalex.org/W4386745624","https://openalex.org/W645887431"],"abstract_inverted_index":{"BACKGROUND:":[0],"A":[1,232],"molecule":[2,122,192,217,234],"editor,":[3],"i.e.":[4],"a":[5,28,38,112,143,148,170],"program":[6],"facilitating":[7],"graphical":[8],"input":[9,59],"and":[10,80,92,108,142,175,177,180,200,203,224,241],"interactive":[11],"editing":[12,123,193],"of":[13,19,51,126,136,150,154,247],"molecules,":[14],"is":[15,48,63,212,219,242,253,274],"an":[16,181],"indispensable":[17],"part":[18],"every":[20],"cheminformatics":[21],"or":[22],"molecular":[23,57],"processing":[24],"system.":[25],"Today,":[26],"when":[27],"web":[29,46,62,76,229,267,281],"browser":[30,47],"has":[31,78,257],"become":[32],"the":[33,45,52,61,64,75,105,127,137,151,155,162,189,209,245,259,266,279],"universal":[34],"scientific":[35],"user":[36,261],"interface,":[37],"tool":[39],"to":[40,89,103,111,186,207,222,226],"edit":[41],"molecules":[42],"directly":[43],"within":[44],"essential.":[49],"One":[50],"most":[53],"popular":[54],"tools":[55],"for":[56,276],"structure":[58],"on":[60,194],"JME":[65,106,128,208],"applet.":[66],"Since":[67],"its":[68],"release":[69],"nearly":[70],"15":[71],"years":[72],"ago,":[73],"however":[74],"environment":[77],"changed":[79],"Java":[81,124,156],"applets":[82],"are":[83],"facing":[84],"increasing":[85],"implementation":[86],"hurdles":[87],"due":[88],"their":[90],"maintenance":[91],"support":[93],"requirements,":[94],"as":[95,97,263,265],"well":[96,264],"security":[98],"issues.":[99],"This":[100,215],"prompted":[101],"us":[102],"update":[104],"editor":[107,129,163,190,211,218,235,252,273],"port":[109],"it":[110],"modern":[113],"Internet":[114],"programming":[115,269],"language":[116],"-":[117],"JavaScript.":[118],"SUMMARY:":[119],"The":[120,251,271],"actual":[121],"code":[125],"was":[130,164,239],"translated":[131],"into":[132,228],"JavaScript":[133,238],"with":[134,255],"help":[135],"Google":[138],"Web":[139],"Toolkit":[140],"compiler":[141],"custom":[144],"library":[145],"that":[146],"emulates":[147],"subset":[149],"GUI":[152],"features":[153],"runtime":[157],"environment.":[158],"In":[159,184,205],"this":[160],"process,":[161],"enhanced":[165],"by":[166],"additional":[167],"functionalities":[168],"including":[169,197],"substituent":[171],"menu,":[172],"copy/paste,":[173],"drag":[174],"drop":[176],"undo/redo":[178],"capabilities":[179],"integrated":[182],"help.":[183],"addition":[185],"desktop":[187],"computers,":[188],"supports":[191],"touch":[195],"devices,":[196],"iPhone,":[198],"iPad":[199],"Android":[201],"phones":[202],"tablets.":[204],"analogy":[206],"new":[210,216],"named":[213],"JSME.":[214],"compact,":[220],"easy":[221,225],"use":[223],"incorporate":[227],"pages.":[230],"CONCLUSIONS:":[231],"free":[233],"written":[236],"in":[237],"developed":[240],"released":[243],"under":[244],"terms":[246],"permissive":[248],"BSD":[249],"license.":[250],"compatible":[254],"JME,":[256],"practically":[258],"same":[260],"interface":[262],"application":[268],"interface.":[270],"JSME":[272],"available":[275],"download":[277],"from":[278],"project":[280],"page":[282],"http://peter-ertl.com/jsme/":[283]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":29},{"year":2024,"cited_by_count":38},{"year":2023,"cited_by_count":40},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":37},{"year":2020,"cited_by_count":26},{"year":2019,"cited_by_count":27},{"year":2018,"cited_by_count":29},{"year":2017,"cited_by_count":23},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":4}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
