{"id":"https://openalex.org/W2151803551","doi":"https://doi.org/10.1186/1758-2946-5-2","title":"Enhanced ranking of PknB Inhibitors using data fusion methods","display_name":"Enhanced ranking of PknB Inhibitors using data fusion methods","publication_year":2013,"publication_date":"2013-01-14","ids":{"openalex":"https://openalex.org/W2151803551","doi":"https://doi.org/10.1186/1758-2946-5-2","mag":"2151803551","pmid":"https://pubmed.ncbi.nlm.nih.gov/23317154"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-5-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-5-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056816429","display_name":"Abhik Seal","orcid":"https://orcid.org/0000-0002-9458-120X"},"institutions":[{"id":"https://openalex.org/I4210101034","display_name":"Birla Institute of Technology and Science - Hyderabad Campus","ror":"https://ror.org/014ctt859","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210101034","https://openalex.org/I74796645"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I74796645","display_name":"Birla Institute of Technology and Science, Pilani","ror":"https://ror.org/001p3jz28","country_code":"IN","type":"education","lineage":["https://openalex.org/I74796645"]}],"countries":["IN","US"],"is_corresponding":true,"raw_author_name":"Abhik Seal","raw_affiliation_strings":["Computer-Aided Drug Design Laboratory, Department of Pharmacy Birla Institute of Technology, Hyderabad Campus, Shameerpet, Hyderbad, 500078, India. pyogee@bits-hyderabad.ac.in","School of Informatics and Computing, Indiana University Bloomington, Bloomington, IN, 47408, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer-Aided Drug Design Laboratory, Department of Pharmacy Birla Institute of Technology, Hyderabad Campus, Shameerpet, Hyderbad, 500078, India. pyogee@bits-hyderabad.ac.in","institution_ids":["https://openalex.org/I4210101034","https://openalex.org/I74796645"]},{"raw_affiliation_string":"School of Informatics and Computing, Indiana University Bloomington, Bloomington, IN, 47408, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055370602","display_name":"Perumal Yogeeswari","orcid":"https://orcid.org/0000-0002-6075-4029"},"institutions":[{"id":"https://openalex.org/I74796645","display_name":"Birla Institute of Technology and Science, Pilani","ror":"https://ror.org/001p3jz28","country_code":"IN","type":"education","lineage":["https://openalex.org/I74796645"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Perumal Yogeeswari","raw_affiliation_strings":["Computer-Aided Drug Design Laboratory, Department of Pharmacy Birla Institute of Technology, Hyderabad Campus, Shameerpet, Hyderbad, 500078, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer-Aided Drug Design Laboratory, Department of Pharmacy Birla Institute of Technology, Hyderabad Campus, Shameerpet, Hyderbad, 500078, India","institution_ids":["https://openalex.org/I74796645"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111966424","display_name":"Dharmaranjan Sriram","orcid":null},"institutions":[{"id":"https://openalex.org/I74796645","display_name":"Birla Institute of Technology and Science, Pilani","ror":"https://ror.org/001p3jz28","country_code":"IN","type":"education","lineage":["https://openalex.org/I74796645"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Dharmaranjan Sriram","raw_affiliation_strings":["Computer-Aided Drug Design Laboratory, Department of Pharmacy Birla Institute of Technology, Hyderabad Campus, Shameerpet, Hyderbad, 500078, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer-Aided Drug Design Laboratory, Department of Pharmacy Birla Institute of Technology, Hyderabad Campus, Shameerpet, Hyderbad, 500078, India","institution_ids":["https://openalex.org/I74796645"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002092202","display_name":"David Wild","orcid":null},"institutions":[{"id":"https://openalex.org/I2799982174","display_name":"Open Source Drug Discovery","ror":"https://ror.org/05pvypf90","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2799351866","https://openalex.org/I2799982174","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I66760702","display_name":"Council of Scientific and Industrial Research","ror":"https://ror.org/021wm7p51","country_code":"IN","type":"government","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210134808","https://openalex.org/I66760702"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"David J Wild","raw_affiliation_strings":["School of Informatics and Computing, Indiana University Bloomington, Bloomington, IN, 47408, USA","Open Source Drug Discovery, Council of Scientific and Industrial Research, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, Indiana University Bloomington, Bloomington, IN, 47408, USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Open Source Drug Discovery, Council of Scientific and Industrial Research, New Delhi, India","institution_ids":["https://openalex.org/I2799982174","https://openalex.org/I66760702"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5056816429"],"corresponding_institution_ids":["https://openalex.org/I4210101034","https://openalex.org/I4210119109","https://openalex.org/I74796645"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":5.5854,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.96261801,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"5","issue":"1","first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.44830000400543213,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.44830000400543213,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.33970001339912415,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.014299999922513962,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.674238383769989},{"id":"https://openalex.org/keywords/pharmacophore","display_name":"Pharmacophore","score":0.6394374966621399},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6209192872047424},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.570956826210022},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5697221755981445},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.4497952461242676},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39537811279296875},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30132028460502625},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2661951780319214},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26410603523254395},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1760701835155487}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.674238383769989},{"id":"https://openalex.org/C56173144","wikidata":"https://www.wikidata.org/wiki/Q1539893","display_name":"Pharmacophore","level":2,"score":0.6394374966621399},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6209192872047424},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.570956826210022},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5697221755981445},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.4497952461242676},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39537811279296875},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30132028460502625},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2661951780319214},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26410603523254395},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1760701835155487},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1758-2946-5-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-5-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:23317154","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23317154","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2601655","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3600029","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-5-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-5-2","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-5-2","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6299999952316284}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335267","display_name":"Open Source Drug Discovery","ror":"https://ror.org/05pvypf90"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2151803551.pdf","grobid_xml":"https://content.openalex.org/works/W2151803551.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W19552341","https://openalex.org/W1487942432","https://openalex.org/W1513123914","https://openalex.org/W1965721706","https://openalex.org/W1972893231","https://openalex.org/W1982842980","https://openalex.org/W1984981677","https://openalex.org/W1985588649","https://openalex.org/W1986240377","https://openalex.org/W1990451437","https://openalex.org/W1992945955","https://openalex.org/W1993421185","https://openalex.org/W1996038152","https://openalex.org/W1999491936","https://openalex.org/W2002755329","https://openalex.org/W2003752196","https://openalex.org/W2009423060","https://openalex.org/W2014276094","https://openalex.org/W2016520940","https://openalex.org/W2020293198","https://openalex.org/W2039403245","https://openalex.org/W2039932426","https://openalex.org/W2042110087","https://openalex.org/W2046108080","https://openalex.org/W2046891749","https://openalex.org/W2049478234","https://openalex.org/W2050103345","https://openalex.org/W2057347947","https://openalex.org/W2062173234","https://openalex.org/W2071658986","https://openalex.org/W2071717945","https://openalex.org/W2072682248","https://openalex.org/W2075726924","https://openalex.org/W2077804275","https://openalex.org/W2078819180","https://openalex.org/W2086987219","https://openalex.org/W2087985297","https://openalex.org/W2102377211","https://openalex.org/W2104679989","https://openalex.org/W2109980079","https://openalex.org/W2118865162","https://openalex.org/W2125335678","https://openalex.org/W2126661983","https://openalex.org/W2128482141","https://openalex.org/W2135732933","https://openalex.org/W2146672317","https://openalex.org/W2147049072","https://openalex.org/W2148797284","https://openalex.org/W2148972377","https://openalex.org/W2151175139","https://openalex.org/W2166845081","https://openalex.org/W2170609914","https://openalex.org/W2494768458","https://openalex.org/W2949504121","https://openalex.org/W4248107770","https://openalex.org/W4253863064"],"related_works":["https://openalex.org/W2000397010","https://openalex.org/W2115078847","https://openalex.org/W2062768126","https://openalex.org/W2061401330","https://openalex.org/W3041915240","https://openalex.org/W2055137136","https://openalex.org/W2080809815","https://openalex.org/W2167386965","https://openalex.org/W1580389218","https://openalex.org/W2969563261"],"abstract_inverted_index":{"BACKGROUND:":[0],"Mycobacterium":[1],"tuberculosis":[2],"encodes":[3],"11":[4,23],"putative":[5],"serine-threonine":[6],"proteins":[7],"Kinases":[8],"(STPK)":[9],"which":[10],"regulates":[11],"transcription,":[12],"cell":[13],"development":[14],"and":[15,30,53,61,94,120,167,173,208,221,246,270],"interaction":[16],"with":[17,148,212],"the":[18,22,36,59,112,145,191,202,233,240],"host":[19],"cells.":[20],"From":[21,39],"STPKs":[24],"three":[25,104],"kinases":[26],"namely":[27],"PknA,":[28],"PknB":[29,47,113],"PknG":[31],"have":[32,102,124,142,163,174],"been":[33,44],"related":[34],"to":[35,132,152,254],"mycobacterial":[37,51],"growth.":[38],"previous":[40],"studies":[41],"it":[42],"has":[43,84],"observed":[45],"that":[46,187,201,266],"is":[48,129],"essential":[49],"for":[50,77,156,170,259,274,298,304],"growth":[52,60],"expressed":[54],"during":[55],"log":[56],"phase":[57],"of":[58,81,88,106,181,193,204,228,291,302],"phosphorylates":[62],"substrates":[63],"involved":[64],"in":[65,91,136,289],"peptidoglycan":[66],"biosynthesis.":[67],"In":[68,159],"recent":[69],"years":[70],"many":[71],"high":[72],"affinity":[73],"inhibitors":[74,155],"are":[75],"reported":[76],"PknB.":[78,157],"Previously":[79],"implementation":[80],"data":[82,107,182,188,236,283],"fusion":[83,108,183,189,237],"shown":[85],"effective":[86],"enrichment":[87],"active":[89],"compounds":[90,134,258],"both":[92,165],"structure":[93,220,269],"ligand":[95,222,271],"based":[96,223,272],"approaches":[97,169,224],".In":[98],"this":[99],"study":[100],"we":[101,162,199],"used":[103,164,253],"types":[105],"ranking":[109,203,215,229,290],"algorithms":[110],"on":[111],"dataset":[114],"namely,":[115],"sum":[116,118],"rank,":[117],"score":[119],"reciprocal":[121,126,149,214],"rank.":[122],"We":[123,141,185,264],"identified":[125],"rank":[127,150],"algorithm":[128,151,216],"capable":[130,227],"enough":[131],"select":[133],"earlier":[135],"a":[137,179,213,299],"virtual":[138,171],"screening":[139],"process.":[140],"also":[143,226],"screened":[144],"Asinex":[146],"database":[147],"identify":[153,255],"possible":[154],"RESULTS:":[158],"our":[160],"work":[161],"structure-based":[166],"ligand-based":[168],"screening,":[172],"combined":[175,280],"their":[176],"results":[177,251,295],"using":[178,239,282],"variety":[180],"methods.":[184],"found":[186,200],"increases":[190],"chance":[192],"actives":[194,230],"being":[195],"ranked":[196],"highly.":[197],"Specifically,":[198],"Pharmacophore":[205],"search,":[206],"ROCS":[207],"Glide":[209],"XP":[210],"fused":[211,250,294],"not":[217],"only":[218],"outperforms":[219],"but":[225],"better":[231],"than":[232],"other":[234],"two":[235],"methods":[238,273],"BEDROC,":[241],"robust":[242],"initial":[243],"enhancement":[244],"(RIE)":[245],"AUC":[247],"metrics.":[248],"These":[249],"were":[252],"45":[256],"candidate":[257],"further":[260],"experimental":[261],"validation.":[262],"CONCLUSION:":[263],"show":[265,296],"very":[267],"different":[268],"predicting":[275],"drug-target":[276],"interactions":[277],"can":[278],"be":[279],"effectively":[281],"fusion,":[284],"outperforming":[285],"any":[286],"single":[287],"method":[288],"actives.":[292],"Such":[293],"promise":[297],"coherent":[300],"selection":[301],"candidates":[303],"biological":[305],"screening.":[306]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
