{"id":"https://openalex.org/W2128119041","doi":"https://doi.org/10.1186/1758-2946-4-9","title":"A chemical specialty semantic network for the Unified Medical Language System","display_name":"A chemical specialty semantic network for the Unified Medical Language System","publication_year":2012,"publication_date":"2012-05-11","ids":{"openalex":"https://openalex.org/W2128119041","doi":"https://doi.org/10.1186/1758-2946-4-9","mag":"2128119041","pmid":"https://pubmed.ncbi.nlm.nih.gov/22577759"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-4-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-4-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050457668","display_name":"C. Paul Morrey","orcid":"https://orcid.org/0000-0002-6097-5913"},"institutions":[{"id":"https://openalex.org/I197572798","display_name":"Utah Valley University","ror":"https://ror.org/02rxpxc98","country_code":"US","type":"education","lineage":["https://openalex.org/I197572798"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"C Paul Morrey","raw_affiliation_strings":["Department of Information Systems and Technology, Utah Valley University, 800 West University Parkway, Orem, UT 84058, USA. paul.morrey@uvu.edu","Department of Information Systems and Technology, Utah Valley University, Orem, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Systems and Technology, Utah Valley University, 800 West University Parkway, Orem, UT 84058, USA. paul.morrey@uvu.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Information Systems and Technology, Utah Valley University, Orem, USA","institution_ids":["https://openalex.org/I197572798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077648725","display_name":"Yehoshua Perl","orcid":"https://orcid.org/0000-0003-1940-9386"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yehoshua Perl","raw_affiliation_strings":["Structural Analysis of Biomedical Ontologies Center, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, NJ, 07102, USA","Structural Analysis of Biomedical Ontologies Center, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Analysis of Biomedical Ontologies Center, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, NJ, 07102, USA","institution_ids":["https://openalex.org/I118118575"]},{"raw_affiliation_string":"Structural Analysis of Biomedical Ontologies Center, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040065844","display_name":"Michael Halper","orcid":"https://orcid.org/0000-0003-4135-0069"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Halper","raw_affiliation_strings":["Information Technology Program, New Jersey Institute of Technology, University Heights, Newark, NJ, 07102, USA","Information Technology Program, New Jersey Institute of Technology, University Heights, Newark, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Program, New Jersey Institute of Technology, University Heights, Newark, NJ, 07102, USA","institution_ids":["https://openalex.org/I118118575"]},{"raw_affiliation_string":"Information Technology Program, New Jersey Institute of Technology, University Heights, Newark, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100411154","display_name":"Ling Chen","orcid":"https://orcid.org/0009-0005-1326-4069"},"institutions":[{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I15653065","display_name":"Borough of Manhattan Community College","ror":"https://ror.org/040hwr020","country_code":"US","type":"education","lineage":["https://openalex.org/I15653065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ling Chen","raw_affiliation_strings":["Department of Science, Borough of Manhattan Community College, City University of New York, 199 Chambers Street, New York, NY, 10007, USA","Department of Science, Borough of Manhattan Community College, City University of New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Science, Borough of Manhattan Community College, City University of New York, 199 Chambers Street, New York, NY, 10007, USA","institution_ids":["https://openalex.org/I15653065","https://openalex.org/I174216632"]},{"raw_affiliation_string":"Department of Science, Borough of Manhattan Community College, City University of New York, New York, USA","institution_ids":["https://openalex.org/I15653065"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105836405","display_name":"Huanying Gu","orcid":"https://orcid.org/0009-0005-9510-6696"},"institutions":[{"id":"https://openalex.org/I135364568","display_name":"New York Institute of Technology","ror":"https://ror.org/01h3yks88","country_code":"CA","type":"education","lineage":["https://openalex.org/I135364568","https://openalex.org/I4210104314"]},{"id":"https://openalex.org/I4210104314","display_name":"New York Institute of Technology","ror":"https://ror.org/01bghzb51","country_code":"US","type":"education","lineage":["https://openalex.org/I4210104314"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Huanying \u201cHelen\u201d Gu","raw_affiliation_strings":["Department of Computer Science, New York Institute of Technology, 1855 Broadway, New York, NY, 10023, USA","Department of Computer Science, New York Institute of Technology, New York, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New York Institute of Technology, 1855 Broadway, New York, NY, 10023, USA","institution_ids":["https://openalex.org/I4210104314"]},{"raw_affiliation_string":"Department of Computer Science, New York Institute of Technology, New York, USA#TAB#","institution_ids":["https://openalex.org/I135364568"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5050457668"],"corresponding_institution_ids":["https://openalex.org/I197572798"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.6718,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.69342197,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"4","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8445000052452087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8445000052452087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.03959999978542328,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.02239999920129776,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.9372007250785828},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.796850323677063},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6027891039848328},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5840439200401306},{"id":"https://openalex.org/keywords/semantic-network","display_name":"Semantic network","score":0.5319643020629883},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.45557135343551636},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4550110697746277},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35370832681655884},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3317391276359558},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10406723618507385}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.9372007250785828},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.796850323677063},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6027891039848328},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5840439200401306},{"id":"https://openalex.org/C85407183","wikidata":"https://www.wikidata.org/wiki/Q1045785","display_name":"Semantic network","level":2,"score":0.5319643020629883},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.45557135343551636},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4550110697746277},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35370832681655884},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3317391276359558},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10406723618507385},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1758-2946-4-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-4-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:22577759","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22577759","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:academicworks.cuny.edu:bm_pubs-1017","is_oa":false,"landing_page_url":"https://academicworks.cuny.edu/bm_pubs/18","pdf_url":null,"source":{"id":"https://openalex.org/S4377196304","display_name":"CUNY Academic Works (City University of New York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I174216632","host_organization_name":"City University of New York","host_organization_lineage":["https://openalex.org/I174216632"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Publications and Research","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:f1c213b47a114ddd80277594e697aae1","is_oa":false,"landing_page_url":"https://doaj.org/article/f1c213b47a114ddd80277594e697aae1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 4, Iss 1, p 9 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2428925","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3428652","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-4-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-4-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.6299999952316284,"id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128119041.pdf","grobid_xml":"https://content.openalex.org/works/W2128119041.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W71211195","https://openalex.org/W90126425","https://openalex.org/W101651648","https://openalex.org/W138612281","https://openalex.org/W141694252","https://openalex.org/W194348082","https://openalex.org/W993736819","https://openalex.org/W1500388473","https://openalex.org/W1501546233","https://openalex.org/W1519436992","https://openalex.org/W1574829624","https://openalex.org/W1579458125","https://openalex.org/W1594324467","https://openalex.org/W1596282532","https://openalex.org/W1681831155","https://openalex.org/W1791148566","https://openalex.org/W2010487328","https://openalex.org/W2033377040","https://openalex.org/W2040224528","https://openalex.org/W2049998732","https://openalex.org/W2057799220","https://openalex.org/W2103260426","https://openalex.org/W2108723491","https://openalex.org/W2115259143","https://openalex.org/W2115871101","https://openalex.org/W2121244856","https://openalex.org/W2128298129","https://openalex.org/W2135240301","https://openalex.org/W2147221739","https://openalex.org/W2147977988","https://openalex.org/W2157272674","https://openalex.org/W2159583324","https://openalex.org/W2162311237","https://openalex.org/W2163967969","https://openalex.org/W2169961623","https://openalex.org/W2184761667","https://openalex.org/W2270018644","https://openalex.org/W2289761467","https://openalex.org/W4231056502"],"related_works":["https://openalex.org/W2914601452","https://openalex.org/W1822792362","https://openalex.org/W1507779355","https://openalex.org/W95090919","https://openalex.org/W2122747165","https://openalex.org/W1042295638","https://openalex.org/W2129765832","https://openalex.org/W2530576204","https://openalex.org/W2171752146","https://openalex.org/W2171844289"],"abstract_inverted_index":{"BACKGROUND:":[0],"Terms":[1],"representing":[2],"chemical":[3,53,90,127,246],"concepts":[4,61,82],"found":[5],"the":[6,48,52,71,74,89,93,125,139,150,198,209,212],"Unified":[7],"Medical":[8],"Language":[9],"System":[10],"(UMLS)":[11],"are":[12,43],"used":[13,185],"to":[14,45,70,187,235,243,258],"derive":[15,236],"an":[16,261],"expanded":[17],"semantic":[18,23,39],"network":[19,112,263],"with":[20,103],"mutually":[21,100],"exclusive":[22,101],"types.":[24],"The":[25,132,206,226],"UMLS":[26,245],"Semantic":[27,116],"Network":[28,117],"(SN)":[29],"is":[30,107,121,171,184,223],"composed":[31],"of":[32,35,51,60,76,92,99,142,177,195,201,211],"a":[33,57,77,96,113,135,143,174,192,237,249],"collection":[34],"broad":[36],"categories":[37],"called":[38],"types":[40,102],"(STs)":[41],"that":[42],"assigned":[44,63],"concepts.":[46],"Within":[47],"UMLS's":[49],"coverage":[50],"domain,":[54],"we":[55],"find":[56],"great":[58],"deal":[59],"being":[62],"more":[64],"than":[65],"one":[66,220],"ST.":[67],"This":[68],"leads":[69],"situation":[72],"where":[73],"extent":[75,145],"given":[78],"ST":[79,241],"may":[80],"contain":[81],"elaborating":[83],"variegated":[84],"semantics.A":[85],"methodology":[86,133,227],"for":[87,147,191,240,251,264],"expanding":[88],"subhierarchy":[91],"SN":[94],"into":[95],"finer-grained":[97],"categorization":[98],"semantically":[104],"uniform":[105],"extents":[106],"presented.":[108],"We":[109],"call":[110],"this":[111],"Chemical":[114],"Specialty":[115],"(CSSN).":[118],"A":[119,168],"CSSN":[120,170,213],"derived":[122,172],"automatically":[123],"from":[124,197],"existing":[126,253],"STs":[128],"and":[129,179,221,257],"their":[130],"assignments.":[131],"incorporates":[134],"threshold":[136,161,175,216],"value":[137,176],"governing":[138],"minimum":[140],"size":[141,210],"type's":[144],"needed":[146],"inclusion":[148],"in":[149],"CSSN.":[151],"Thus,":[152],"different":[153,160],"CSSNs":[154],"can":[155],"be":[156],"created":[157],"by":[158],"choosing":[159],"values":[162,218],"based":[163],"on":[164,208],"varying":[165],"requirements.":[166],"RESULTS:":[167],"complete":[169],"using":[173,214],"300":[178],"having":[180],"68":[181],"STs.":[182],"It":[183],"effectively":[186],"provide":[188],"high-level":[189],"categorizations":[190],"random":[193],"sample":[194],"compounds":[196],"\"Chemical":[199],"Entities":[200],"Biological":[202],"Interest\"":[203],"(ChEBI)":[204],"ontology.":[205],"effect":[207],"various":[215],"parameter":[217],"between":[219],"500":[222],"shown.":[224],"CONCLUSIONS:":[225],"has":[228],"several":[229],"potential":[230],"applications,":[231],"including":[232],"its":[233],"use":[234],"pre-coordinated":[238],"guide":[239],"assignments":[242],"new":[244],"concepts,":[247,254],"as":[248,260],"tool":[250],"auditing":[252],"inter-terminology":[255],"mapping,":[256],"serve":[259],"upper-level":[262],"ChEBI.":[265]},"counts_by_year":[{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
