{"id":"https://openalex.org/W2114940395","doi":"https://doi.org/10.1186/1758-2946-4-8","title":"Structure-based classification and ontology in chemistry","display_name":"Structure-based classification and ontology in chemistry","publication_year":2012,"publication_date":"2012-04-05","ids":{"openalex":"https://openalex.org/W2114940395","doi":"https://doi.org/10.1186/1758-2946-4-8","mag":"2114940395","pmid":"https://pubmed.ncbi.nlm.nih.gov/22480202"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-4-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-4-8","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044072805","display_name":"Janna Hastings","orcid":"https://orcid.org/0000-0002-3469-4923"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210137637","display_name":"Bioinformatics Institute","ror":"https://ror.org/04btxg914","country_code":"RU","type":"nonprofit","lineage":["https://openalex.org/I4210137637"]}],"countries":["CH","GB","RU"],"is_corresponding":true,"raw_author_name":"Janna Hastings","raw_affiliation_strings":["Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK. hastings@ebi.ac.uk","Swiss Center for Affective Sciences, University of Geneva, Geneva, Switzerland","Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK. hastings@ebi.ac.uk","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210137637"]},{"raw_affiliation_string":"Swiss Center for Affective Sciences, University of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020439365","display_name":"Despoina Magka","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Despoina Magka","raw_affiliation_strings":["Department of Computer Science, University of Oxford, Oxford, UK","Department of Computer Science University of Oxford Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Computer Science University of Oxford Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052275685","display_name":"Colin Batchelor","orcid":"https://orcid.org/0000-0001-5985-7429"},"institutions":[{"id":"https://openalex.org/I2751430930","display_name":"Royal Society of Chemistry","ror":"https://ror.org/025sbr097","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2751430930"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Colin Batchelor","raw_affiliation_strings":["Royal Society of Chemistry, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Royal Society of Chemistry, Cambridge, UK","institution_ids":["https://openalex.org/I2751430930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100745078","display_name":"Lian Duan","orcid":"https://orcid.org/0000-0002-6264-8465"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"Lian Duan","raw_affiliation_strings":["Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK","ETH, Z\u00fcrich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"ETH, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049799218","display_name":"Robert Stevens","orcid":"https://orcid.org/0000-0002-6038-9025"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Stevens","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK","Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002211213","display_name":"Marcus Ennis","orcid":"https://orcid.org/0000-0002-6580-6297"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Marcus Ennis","raw_affiliation_strings":["Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040194803","display_name":"Christoph Steinbeck","orcid":"https://orcid.org/0000-0001-6966-0814"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christoph Steinbeck","raw_affiliation_strings":["Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5044072805"],"corresponding_institution_ids":["https://openalex.org/I114457229","https://openalex.org/I1303153112","https://openalex.org/I4210137637"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":7.4439,"has_fulltext":true,"cited_by_count":63,"citation_normalized_percentile":{"value":0.97826087,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"4","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.35580000281333923,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.35580000281333923,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.1454000025987625,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13297","display_name":"History and advancements in chemistry","score":0.10899999737739563,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6756147742271423},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5983497500419617},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4779201149940491},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4518727958202362},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.38269463181495667},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3657163679599762}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6756147742271423},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5983497500419617},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4779201149940491},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4518727958202362},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.38269463181495667},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3657163679599762},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1186/1758-2946-4-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-4-8","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:22480202","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22480202","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/da315011-bd5a-4751-817f-535eeceeb89c","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/da315011-bd5a-4751-817f-535eeceeb89c","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hastings, J, Magka, D, Batchelor, C, Duan, L, Stevens, R, Ennis, M & Steinbeck, C 2012, 'Structure-based classification and ontology in chemistry', Journal of Cheminformatics, vol. 4, no. 4, 8. https://doi.org/10.1186/1758-2946-4-8","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:586838aaa7e54c4688d966974833604b","is_oa":false,"landing_page_url":"https://doaj.org/article/586838aaa7e54c4688d966974833604b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 4, Iss 1, p 8 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2373122","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3361486","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:34b22a92-4e79-4a91-9a94-e3cb40cf4a97","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:34b22a92-4e79-4a91-9a94-e3cb40cf4a97","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Department of Computer Science","raw_type":"Journal article"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/49483","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/49483","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, 4 (1)","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-b-000049483","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000049483","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-4-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-4-8","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-8","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3794631031","display_name":"Continued development of the ChEBI database and ontology for improved interoperability with biomedical resources","funder_award_id":"BB/G022747/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8676078072","display_name":null,"funder_award_id":"BB/G022747/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114940395.pdf","grobid_xml":"https://content.openalex.org/works/W2114940395.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W72872960","https://openalex.org/W1484151351","https://openalex.org/W1503647529","https://openalex.org/W1518783375","https://openalex.org/W1524134026","https://openalex.org/W1545231783","https://openalex.org/W1557616438","https://openalex.org/W1580714437","https://openalex.org/W1583723150","https://openalex.org/W1591768831","https://openalex.org/W1601495365","https://openalex.org/W1791430325","https://openalex.org/W1965534201","https://openalex.org/W1990567887","https://openalex.org/W1999820454","https://openalex.org/W1999895438","https://openalex.org/W2001869885","https://openalex.org/W2009068495","https://openalex.org/W2015122936","https://openalex.org/W2016976521","https://openalex.org/W2023593235","https://openalex.org/W2026218673","https://openalex.org/W2034354062","https://openalex.org/W2060576972","https://openalex.org/W2060616445","https://openalex.org/W2069530087","https://openalex.org/W2074909362","https://openalex.org/W2097698606","https://openalex.org/W2103017472","https://openalex.org/W2114124738","https://openalex.org/W2117057011","https://openalex.org/W2124834853","https://openalex.org/W2125904022","https://openalex.org/W2139315672","https://openalex.org/W2144573571","https://openalex.org/W2145435867","https://openalex.org/W2149378423","https://openalex.org/W2156226590","https://openalex.org/W2161723275","https://openalex.org/W2162385209","https://openalex.org/W2179066627","https://openalex.org/W2205915548","https://openalex.org/W2257876130","https://openalex.org/W2294320291","https://openalex.org/W2330401531","https://openalex.org/W2407681408","https://openalex.org/W3009281336","https://openalex.org/W4234895322","https://openalex.org/W4300633006","https://openalex.org/W4320474983"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487","https://openalex.org/W1986764834"],"abstract_inverted_index":{"BACKGROUND:":[0],"Recent":[1],"years":[2],"have":[3],"seen":[4],"an":[5,107],"explosion":[6],"in":[7,12,61,129,136,156,158,178,188,217],"the":[8,13,25,44,52,71,137,151,164,172,218,224,228,242,277,289,317],"availability":[9],"of":[10,54,80,95,109,150,153,166,175,183,195,204,227,266,279,283,292,302,316,325],"data":[11,261,294],"chemistry":[14,130,159,260],"domain.":[15,140],"With":[16],"this":[17],"information":[18],"explosion,":[19],"however,":[20],"retrieving":[21],"relevant":[22],"results":[23],"from":[24],"available":[26,45,167,318],"information,":[27],"and":[28,42,87,134,209,232,244,249,273,320,322],"organising":[29],"those":[30],"results,":[31],"become":[32],"even":[33],"harder":[34],"problems.":[35],"Computational":[36],"processing":[37],"is":[38,74,99,113],"essential":[39,286],"to":[40,49,163,198,223,287],"filter":[41],"organise":[43],"resources":[46],"so":[47],"as":[48,121],"better":[50],"facilitate":[51],"work":[53],"scientists.":[55],"Ontologies":[56],"encode":[57],"expert":[58],"domain":[59,73],"knowledge":[60],"a":[62,78,88,96,110,147,161,181,263,313],"hierarchically":[63],"organised":[64],"machine-processable":[65],"format.":[66],"One":[67],"such":[68],"ontology":[69,212],"for":[70,185,202,235],"chemical":[72,139,284,293],"ChEBI.":[75],"ChEBI":[76],"provides":[77],"classification":[79,128,155,282],"chemicals":[81,118],"based":[82],"on":[83,259],"their":[84],"structural":[85,125,154,176],"features":[86,186],"role":[89],"or":[90],"activity-based":[91],"classification.":[92],"An":[93],"example":[94,108],"structure-based":[97,281],"class":[98,112,189,196],"'pentacyclic":[100],"compound'":[101],"(compounds":[102],"containing":[103],"five-ring":[104],"structures),":[105],"while":[106],"role-based":[111],"'analgesic',":[114],"since":[115],"many":[116],"different":[117,173,307],"can":[119],"act":[120],"analgesics":[122],"without":[123],"sharing":[124],"features.":[126],"Structure-based":[127],"exploits":[131],"elegant":[132],"regularities":[133],"symmetries":[135],"underlying":[138,267],"As":[141],"yet,":[142],"there":[143],"has":[144],"been":[145],"neither":[146],"systematic":[148],"analysis":[149],"types":[152],"use":[157],"nor":[160],"comparison":[162],"capabilities":[165,226],"technologies.":[168],"RESULTS:":[169],"We":[170,191,311],"analyze":[171],"categories":[174],"classes":[177],"chemistry,":[179],"presenting":[180],"list":[182],"patterns":[184,194],"found":[187],"definitions.":[190],"compare":[192],"these":[193],"definition":[197],"tools":[199,319],"which":[200,299],"allow":[201],"automation":[203],"hierarchy":[205],"construction":[206],"within":[207,210],"cheminformatics":[208,247],"logic-based":[211,250,274],"technology,":[213],"going":[214],"into":[215],"detail":[216],"latter":[219],"case":[220],"with":[221],"respect":[222],"expressive":[225],"Web":[229],"Ontology":[230],"Language":[231],"recent":[233],"extensions":[234],"modelling":[236],"structured":[237],"objects.":[238],"Finally":[239],"we":[240],"discuss":[241],"relationships":[243],"interactions":[245],"between":[246],"approaches":[248,308],"approaches.":[251],"CONCLUSION:":[252],"Systems":[253],"that":[254],"perform":[255],"intelligent":[256],"reasoning":[257,304],"tasks":[258],"require":[262],"diverse":[264],"set":[265],"computational":[268],"utilities":[269],"including":[270],"algorithmic,":[271],"statistical":[272],"tools.":[275],"For":[276],"task":[278],"automatic":[280],"entities,":[285],"managing":[288],"vast":[290],"swathes":[291],"being":[295],"brought":[296],"online,":[297],"systems":[298],"are":[300,309],"capable":[301],"hybrid":[303],"combining":[305],"several":[306],"crucial.":[310],"provide":[312],"thorough":[314],"review":[315],"methodologies,":[321],"identify":[323],"areas":[324],"open":[326],"research.":[327]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":4}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
