{"id":"https://openalex.org/W2122513050","doi":"https://doi.org/10.1186/1758-2946-4-7","title":"CheS-Mapper - Chemical Space Mapping and Visualization in 3D","display_name":"CheS-Mapper - Chemical Space Mapping and Visualization in 3D","publication_year":2012,"publication_date":"2012-03-17","ids":{"openalex":"https://openalex.org/W2122513050","doi":"https://doi.org/10.1186/1758-2946-4-7","mag":"2122513050","pmid":"https://pubmed.ncbi.nlm.nih.gov/22424447"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-4-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-4-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065697003","display_name":"Martin G\u00fctlein","orcid":"https://orcid.org/0000-0003-2939-2469"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Martin G\u00fctlein","raw_affiliation_strings":["Department of Computer Science, Albert-Ludwigs-Universit\u00e4t Freiburg, Freiburg im Breisgau, Germany. guetlein@informatik.uni-freiburg.de","Department of Computer Science, Albert-Ludwigs-Universit\u00e4t Freiburg, Freiburg im Breisgau, , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Albert-Ludwigs-Universit\u00e4t Freiburg, Freiburg im Breisgau, Germany. guetlein@informatik.uni-freiburg.de","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Department of Computer Science, Albert-Ludwigs-Universit\u00e4t Freiburg, Freiburg im Breisgau, , Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026210150","display_name":"Andreas Karwath","orcid":"https://orcid.org/0000-0002-6942-3760"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Karwath","raw_affiliation_strings":["Department of Computer Science, Albert-Ludwigs-Universit\u00e4t Freiburg, Freiburg im Breisgau, Germany","Department of Computer Science, Albert-Ludwigs-Universit\u00e4t Freiburg, Freiburg im Breisgau, , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Albert-Ludwigs-Universit\u00e4t Freiburg, Freiburg im Breisgau, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Department of Computer Science, Albert-Ludwigs-Universit\u00e4t Freiburg, Freiburg im Breisgau, , Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102744434","display_name":"Stefan Kr\u00e4mer","orcid":"https://orcid.org/0000-0003-0136-2540"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Kramer","raw_affiliation_strings":["Institute for Computer Science, Johannes Gutenberg-Universit\u00e4t Mainz, Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Computer Science, Johannes Gutenberg-Universit\u00e4t Mainz, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5065697003"],"corresponding_institution_ids":["https://openalex.org/I161046081"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":4.8524,"has_fulltext":true,"cited_by_count":58,"citation_normalized_percentile":{"value":0.95600445,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"4","issue":"1","first_page":"7","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9606000185012817,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.8885408639907837},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7774782180786133},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.7517588138580322},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6900414228439331},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6406301259994507},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5250727534294128},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5101345181465149},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.48789191246032715},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.43012726306915283},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3489668369293213},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.26328223943710327},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.23959460854530334},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20451906323432922},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.10042339563369751},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07026121020317078}],"concepts":[{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.8885408639907837},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7774782180786133},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.7517588138580322},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6900414228439331},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6406301259994507},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5250727534294128},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5101345181465149},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.48789191246032715},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.43012726306915283},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3489668369293213},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.26328223943710327},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.23959460854530334},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20451906323432922},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.10042339563369751},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07026121020317078},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1758-2946-4-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-4-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:22424447","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22424447","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:3c5ce59a566f4796980f780a3b742cbc","is_oa":true,"landing_page_url":"https://doaj.org/article/3c5ce59a566f4796980f780a3b742cbc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 4, Iss 1, p 7 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2336186","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3331825","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/69110378-008c-4284-8039-8e89158f9d99","is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/69110378-008c-4284-8039-8e89158f9d99","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"G\u00fctlein, M, Karwath, A & Kramer, S 2012, 'CheS-Mapper - Chemical Space Mapping and Visualization in 3D', Journal of Cheminformatics, vol. 4, pp. 7. https://doi.org/10.1186/1758-2946-4-7","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-4-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-4-7","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-4-7","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2122513050.pdf","grobid_xml":"https://content.openalex.org/works/W2122513050.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W131730353","https://openalex.org/W255996521","https://openalex.org/W602985745","https://openalex.org/W1560868107","https://openalex.org/W1967482463","https://openalex.org/W2006027568","https://openalex.org/W2024088210","https://openalex.org/W2025556769","https://openalex.org/W2029380217","https://openalex.org/W2071981082","https://openalex.org/W2073308541","https://openalex.org/W2081014444","https://openalex.org/W2084087750","https://openalex.org/W2085487226","https://openalex.org/W2098889731","https://openalex.org/W2108940750","https://openalex.org/W2133990480","https://openalex.org/W2134312057","https://openalex.org/W2147421370","https://openalex.org/W2148797284","https://openalex.org/W2155430111","https://openalex.org/W2156247618","https://openalex.org/W2160785561","https://openalex.org/W2168052206","https://openalex.org/W2169065610","https://openalex.org/W2169678694","https://openalex.org/W2169773700","https://openalex.org/W2187089797","https://openalex.org/W2473004715","https://openalex.org/W2582743722","https://openalex.org/W2769245605","https://openalex.org/W4247545505","https://openalex.org/W4250434996"],"related_works":["https://openalex.org/W4382246684","https://openalex.org/W4387845407","https://openalex.org/W2902857455","https://openalex.org/W4207004502","https://openalex.org/W4212982662","https://openalex.org/W4210899196","https://openalex.org/W2160244398","https://openalex.org/W2907885506","https://openalex.org/W2022444336","https://openalex.org/W2601867172"],"abstract_inverted_index":{"Analyzing":[0],"chemical":[1,28,116],"datasets":[2,63],"is":[3,16],"a":[4,144,160],"challenging":[5],"task":[6],"for":[7,163],"scientific":[8,141],"researchers":[9],"in":[10,73,96],"the":[11,22,25,48,97,127,137,147],"field":[12],"of":[13,27,66,107,159],"chemoinformatics.":[14],"It":[15],"important,":[17],"yet":[18],"difficult":[19],"to":[20,45,94,129,139,153],"understand":[21,131],"relationship":[23],"between":[24],"structure":[26],"compounds,":[29],"their":[30,78,82],"physico-chemical":[31],"properties,":[32],"and":[33,69,103,133,135,155],"biological":[34],"or":[35],"toxic":[36],"effects.":[37],"To":[38],"that":[39,77],"respect,":[40],"visualization":[41],"tools":[42],"can":[43,86,101,120,149],"help":[44],"better":[46,130],"comprehend":[47],"underlying":[49],"correlations.":[50],"Our":[51],"recently":[52],"developed":[53],"3D":[54,74],"molecular":[55],"viewer":[56],"CheS-Mapper":[57],"(Chemical":[58],"Space":[59],"Mapper)":[60],"divides":[61],"large":[62],"into":[64],"clusters":[65],"similar":[67],"compounds":[68],"consequently":[70],"arranges":[71],"them":[72],"space,":[75],"such":[76],"spatial":[79],"proximity":[80],"reflects":[81],"similarity.":[83],"The":[84,99],"user":[85],"indirectly":[87],"determine":[88],"similarity,":[89],"by":[90],"selecting":[91],"which":[92,125],"features":[93,119],"employ":[95],"process.":[98],"tool":[100,148],"use":[102],"calculate":[104],"different":[105],"kind":[106],"features,":[108],"like":[109],"structural":[110],"fragments":[111],"as":[112,114],"well":[113],"quantitative":[115],"descriptors.":[117],"These":[118],"be":[121,151],"highlighted":[122],"within":[123],"CheS-Mapper,":[124],"aids":[126],"chemist":[128],"patterns":[132],"regularities":[134],"relate":[136],"observations":[138],"established":[140],"knowledge.":[142],"As":[143],"final":[145],"function,":[146],"also":[150],"used":[152],"select":[154],"export":[156],"specific":[157],"subsets":[158],"given":[161],"dataset":[162],"further":[164],"analysis.":[165]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
