{"id":"https://openalex.org/W2159707825","doi":"https://doi.org/10.1186/1758-2946-3-s1-p36","title":"Predicting protein-protein interactions with DrugScorePPI: fully-flexible docking, scoring, and in silicoalanine-scanning","display_name":"Predicting protein-protein interactions with DrugScorePPI: fully-flexible docking, scoring, and in silicoalanine-scanning","publication_year":2011,"publication_date":"2011-04-19","ids":{"openalex":"https://openalex.org/W2159707825","doi":"https://doi.org/10.1186/1758-2946-3-s1-p36","mag":"2159707825"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-3-s1-p36","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-s1-p36","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-3-S1-P36","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-3-S1-P36","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108792813","display_name":"DM Kr\u00fcger","orcid":null},"institutions":[{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"DM Kr\u00fcger","raw_affiliation_strings":["Department of Mathematics and Natural Sciences, Heinrich-Heine-University, 40225, D\u00fcsseldorf, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Natural Sciences, Heinrich-Heine-University, 40225, D\u00fcsseldorf, Germany","institution_ids":["https://openalex.org/I44260953"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113064671","display_name":"Javier Garz\u00f3n","orcid":null},"institutions":[{"id":"https://openalex.org/I4210147680","display_name":"Centro de Investigaciones Biol\u00f3gicas Margarita Salas","ror":"https://ror.org/04advdf21","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210147680"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"JI Garz\u00f3n","raw_affiliation_strings":["Centro de Investigaciones Biol\u00f3gicas (CSIC), 28040, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaciones Biol\u00f3gicas (CSIC), 28040, Madrid, Spain","institution_ids":["https://openalex.org/I4210147680"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054988161","display_name":"PC Montes","orcid":null},"institutions":[{"id":"https://openalex.org/I4210147680","display_name":"Centro de Investigaciones Biol\u00f3gicas Margarita Salas","ror":"https://ror.org/04advdf21","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210147680"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"PC Montes","raw_affiliation_strings":["Centro de Investigaciones Biol\u00f3gicas (CSIC), 28040, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaciones Biol\u00f3gicas (CSIC), 28040, Madrid, Spain","institution_ids":["https://openalex.org/I4210147680"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063949219","display_name":"Holger Gohlke","orcid":"https://orcid.org/0000-0001-8613-1447"},"institutions":[{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"H Gohlke","raw_affiliation_strings":["Department of Mathematics and Natural Sciences, Heinrich-Heine-University, 40225, D\u00fcsseldorf, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Natural Sciences, Heinrich-Heine-University, 40225, D\u00fcsseldorf, Germany","institution_ids":["https://openalex.org/I44260953"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5108792813"],"corresponding_institution_ids":["https://openalex.org/I44260953"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.133,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.5447911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"3","issue":"S1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8138271570205688},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5015971660614014},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46450042724609375},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.4376782178878784},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.42803236842155457},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37874045968055725},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2892075777053833},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2499847114086151},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20257288217544556},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.14582976698875427},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11221674084663391},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.10563549399375916},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.07433280348777771}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8138271570205688},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5015971660614014},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46450042724609375},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.4376782178878784},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.42803236842155457},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37874045968055725},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2892075777053833},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2499847114086151},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20257288217544556},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14582976698875427},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11221674084663391},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.10563549399375916},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.07433280348777771},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1758-2946-3-s1-p36","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-s1-p36","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-3-S1-P36","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmh:oai:digital.csic.es:10261/35882","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/35882","pdf_url":null,"source":{"id":"https://openalex.org/S4306401639","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Art\u00edculo"},{"id":"pmh:oai:doaj.org/article:9b4268a83394425d8a9afcf015ffc0f9","is_oa":true,"landing_page_url":"https://doaj.org/article/9b4268a83394425d8a9afcf015ffc0f9","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 3, Iss Suppl 1, p P36 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2091972","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3083592","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-3-s1-p36","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-s1-p36","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-3-S1-P36","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2159707825.pdf","grobid_xml":"https://content.openalex.org/works/W2159707825.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W2070506154","https://openalex.org/W2099907934","https://openalex.org/W2126852131"],"related_works":["https://openalex.org/W1979284950","https://openalex.org/W2342853224","https://openalex.org/W2584308739","https://openalex.org/W2963060696","https://openalex.org/W2584261332","https://openalex.org/W1989781797","https://openalex.org/W3187431608","https://openalex.org/W2439654195","https://openalex.org/W2412487984","https://openalex.org/W2487066455"],"abstract_inverted_index":{"DOAJ":[0],"is":[1,26],"a":[2,18],"unique":[3],"and":[4],"extensive":[5],"index":[6],"of":[7],"diverse":[8],"open":[9],"access":[10],"journals":[11],"from":[12],"around":[13],"the":[14],"world,":[15],"driven":[16],"by":[17],"growing":[19],"community,":[20],"committed":[21],"to":[22],"ensuring":[23],"quality":[24],"content":[25],"freely":[27],"available":[28],"online":[29],"for":[30],"everyone.":[31]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}
