{"id":"https://openalex.org/W2016076109","doi":"https://doi.org/10.1186/1758-2946-3-s1-p12","title":"chemfp - fast and portable fingerprint formats and tools","display_name":"chemfp - fast and portable fingerprint formats and tools","publication_year":2011,"publication_date":"2011-04-19","ids":{"openalex":"https://openalex.org/W2016076109","doi":"https://doi.org/10.1186/1758-2946-3-s1-p12","mag":"2016076109"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-3-s1-p12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-s1-p12","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-3-S1-P12","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-3-S1-P12","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5097172675","display_name":"AP Dalke","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086148","display_name":"Thermo Fisher Scientific (Sweden)","ror":"https://ror.org/00nfck739","country_code":"SE","type":"company","lineage":["https://openalex.org/I4210086148","https://openalex.org/I4210142480"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"AP Dalke","raw_affiliation_strings":["Andrew Dalke Scientific AB, G\u00f6teborg, 413 10, Sweden","Andrew Dalke Scientific AB, G\u00f6teborg, Sweden"],"affiliations":[{"raw_affiliation_string":"Andrew Dalke Scientific AB, G\u00f6teborg, 413 10, Sweden","institution_ids":["https://openalex.org/I4210086148"]},{"raw_affiliation_string":"Andrew Dalke Scientific AB, G\u00f6teborg, Sweden","institution_ids":["https://openalex.org/I4210086148"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5097172675"],"corresponding_institution_ids":["https://openalex.org/I4210086148"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":0.0,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.08516285,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"3","issue":"S1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9681000113487244,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9334999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7340980768203735},{"id":"https://openalex.org/keywords/fingerprint","display_name":"Fingerprint (computing)","score":0.6584803462028503},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3812011182308197},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3548152446746826},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33729881048202515},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33276528120040894},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.19463300704956055}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7340980768203735},{"id":"https://openalex.org/C2777826928","wikidata":"https://www.wikidata.org/wiki/Q3745713","display_name":"Fingerprint (computing)","level":2,"score":0.6584803462028503},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3812011182308197},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3548152446746826},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33729881048202515},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33276528120040894},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.19463300704956055}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/1758-2946-3-s1-p12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-s1-p12","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-3-S1-P12","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2091946","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3083566","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-3-s1-p12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-s1-p12","pdf_url":"https://jcheminf.biomedcentral.com/track/pdf/10.1186/1758-2946-3-S1-P12","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2016076109.pdf","grobid_xml":"https://content.openalex.org/works/W2016076109.grobid-xml"},"referenced_works_count":1,"referenced_works":["https://openalex.org/W2176720124"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2339806289","https://openalex.org/W3008853525","https://openalex.org/W2368132270","https://openalex.org/W2173185020","https://openalex.org/W2946784807","https://openalex.org/W2986003362","https://openalex.org/W109501413","https://openalex.org/W2075134888","https://openalex.org/W4388857868"],"abstract_inverted_index":{"Fingerprints":[0],"are":[1,13,62,102,104,193],"conceptually":[2],"simple":[3,37],"but":[4],"the":[5,81,99,127,200,210],"abstract":[6],"sequence":[7],"of":[8,19,83,108],"0":[9],"and":[10,95,98,129,164,168,207,217,222],"1":[11],"bits":[12,135],"represented":[14],"in":[15,144],"an":[16,106,113],"astonishing":[17],"variety":[18],"forms.":[20],"The":[21,60,146,170,190],"diversity":[22],"exists":[23],"for":[24,31,44,93,125,179,185,219],"a":[25,36,47,84,150,174,214],"very":[26],"practical":[27],"sense:":[28],"it's":[29],"easier":[30],"most":[32],"researchers":[33],"to":[34,42,78,161,166,204],"create":[35],"format":[38,148,153,172,177,191],"than":[39,111],"it":[40],"is":[41,149,159,173],"search":[43],"or":[45,56,136],"advocate":[46],"common":[48],"standard.":[49],"Incompatible":[50],"formats":[51,67,124],"often":[52,105,142],"have":[53,90,118],"no":[54],"immediate":[55],"large":[57],"negative":[58],"consequence.":[59],"problems":[61],"more":[63],"subtle.":[64],"Ad":[65],"hoc":[66],"cannot":[68],"easily":[69],"be":[70,162],"exchanged":[71],"with":[72,138,199,209],"other":[73],"groups.":[74],"They":[75,87],"lack":[76],"metadata":[77],"help":[79],"track":[80],"provenance":[82],"data":[85],"set.":[86],"do":[88],"not":[89],"existing":[91],"tools":[92,100],"creating":[94],"manipulating":[96],"records,":[97],"which":[101],"written":[103],"order":[107],"magnitude":[109],"slower":[110],"what":[112],"optimized":[114,183],"program":[115],"can":[116],"achive.\r\n\r\nI":[117],"developed":[119],"two":[120],"file":[121,123],"portable":[122],"storing":[126],"short":[128],"dense":[130],"fingerprints":[131],"(order":[132],"16":[133],"K":[134],"less,":[137],"density":[139],">":[140],"1%)":[141],"seen":[143],"cheminformatics.":[145],"FPS":[147],"line-based":[151],"text":[152],"using":[154],"hex":[155],"fingerprint":[156,223],"encoding.":[157],"It":[158,212],"designed":[160,178],"readable":[163],"easy":[165],"generate":[167],"parse.":[169],"FPB":[171],"block-based":[175],"binary":[176],"high-performance":[180],"operations,":[181],"including":[182],"ordering":[184],"sublinear":[186],"Tanimoto":[187],"searches":[188],"[1].":[189],"descriptions":[192],"freely":[194],"available":[195],"at":[196],"[2]":[197],"along":[198],"chemfp":[201],"Python":[202],"package":[203],"generate,":[205],"convert,":[206],"work":[208],"formats.":[211],"includes":[213],"C":[215],"library":[216],"extension":[218],"fast":[220],"parsing":[221],"operations.":[224]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
