{"id":"https://openalex.org/W2170481351","doi":"https://doi.org/10.1186/1758-2946-3-4","title":"PubChem3D: Conformer generation","display_name":"PubChem3D: Conformer generation","publication_year":2011,"publication_date":"2011-01-27","ids":{"openalex":"https://openalex.org/W2170481351","doi":"https://doi.org/10.1186/1758-2946-3-4","mag":"2170481351","pmid":"https://pubmed.ncbi.nlm.nih.gov/21272340"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-3-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015494748","display_name":"Evan Bolton","orcid":"https://orcid.org/0000-0002-5959-6190"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Evan E Bolton","raw_affiliation_strings":["National Center for Biotechnology Information National Library of Medicine National Institutes of Health Department of Health and Human Services 8600 Rockville Pike, Bethesda, MD 20894, USA. bolton@ncbi.nlm.nih.gov","National Center for Biotechnology Information National Library of Medicine, National Institutes of Health Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information National Library of Medicine National Institutes of Health Department of Health and Human Services 8600 Rockville Pike, Bethesda, MD 20894, USA. bolton@ncbi.nlm.nih.gov","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Center for Biotechnology Information National Library of Medicine, National Institutes of Health Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100430147","display_name":"Sunghwan Kim","orcid":"https://orcid.org/0000-0001-9828-2074"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sunghwan Kim","raw_affiliation_strings":["National Center for Biotechnology Information National Library of Medicine, National Institutes of Health Department of Health and Human Services, Bethesda, USA","National Center for Biotechnology Information National Library of Medicine, National Institutes of Health Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information National Library of Medicine, National Institutes of Health Department of Health and Human Services, Bethesda, USA","institution_ids":["https://openalex.org/I1299303238"]},{"raw_affiliation_string":"National Center for Biotechnology Information National Library of Medicine, National Institutes of Health Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040349721","display_name":"Stephen H. Bryant","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen H Bryant","raw_affiliation_strings":["National Center for Biotechnology Information National Library of Medicine, National Institutes of Health Department of Health and Human Services, Bethesda, USA","National Center for Biotechnology Information National Library of Medicine, National Institutes of Health Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information National Library of Medicine, National Institutes of Health Department of Health and Human Services, Bethesda, USA","institution_ids":["https://openalex.org/I1299303238"]},{"raw_affiliation_string":"National Center for Biotechnology Information National Library of Medicine, National Institutes of Health Department of Health and Human Services, 8600 Rockville Pike, Bethesda, MD, 20894, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5015494748"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":2.9751,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.91610708,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"3","issue":"1","first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9036999940872192,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9036999940872192,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.03269999846816063,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10798","display_name":"Crystallography and molecular interactions","score":0.009399999864399433,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conformational-isomerism","display_name":"Conformational isomerism","score":0.9787197113037109},{"id":"https://openalex.org/keywords/pubchem","display_name":"PubChem","score":0.7473435997962952},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5290138721466064},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5104250311851501},{"id":"https://openalex.org/keywords/small-molecule","display_name":"Small molecule","score":0.4773321747779846},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4758869409561157},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.4634447395801544},{"id":"https://openalex.org/keywords/dihedral-angle","display_name":"Dihedral angle","score":0.44367504119873047},{"id":"https://openalex.org/keywords/force-field","display_name":"Force field (fiction)","score":0.42562413215637207},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.40720680356025696},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.36482489109039307},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3480251431465149},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2508534789085388},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.08491787314414978}],"concepts":[{"id":"https://openalex.org/C18705241","wikidata":"https://www.wikidata.org/wiki/Q1128023","display_name":"Conformational isomerism","level":3,"score":0.9787197113037109},{"id":"https://openalex.org/C158180186","wikidata":"https://www.wikidata.org/wiki/Q278487","display_name":"PubChem","level":2,"score":0.7473435997962952},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5290138721466064},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5104250311851501},{"id":"https://openalex.org/C161624437","wikidata":"https://www.wikidata.org/wiki/Q1988322","display_name":"Small molecule","level":2,"score":0.4773321747779846},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4758869409561157},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.4634447395801544},{"id":"https://openalex.org/C89025888","wikidata":"https://www.wikidata.org/wiki/Q911907","display_name":"Dihedral angle","level":4,"score":0.44367504119873047},{"id":"https://openalex.org/C10803110","wikidata":"https://www.wikidata.org/wiki/Q1341441","display_name":"Force field (fiction)","level":2,"score":0.42562413215637207},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.40720680356025696},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.36482489109039307},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3480251431465149},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2508534789085388},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.08491787314414978},{"id":"https://openalex.org/C112887158","wikidata":"https://www.wikidata.org/wiki/Q169324","display_name":"Hydrogen bond","level":3,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1758-2946-3-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:21272340","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21272340","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c1f8aa89316e487cb1c01cf317bd1bed","is_oa":true,"landing_page_url":"https://doaj.org/article/c1f8aa89316e487cb1c01cf317bd1bed","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 3, Iss 1, p 4 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3042967","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3042967","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-3-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-4","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-4","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.8799999952316284,"id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170481351.pdf","grobid_xml":"https://content.openalex.org/works/W2170481351.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W966084261","https://openalex.org/W1497828738","https://openalex.org/W1531550633","https://openalex.org/W1578560356","https://openalex.org/W1601495365","https://openalex.org/W1971572370","https://openalex.org/W1973056533","https://openalex.org/W1986139296","https://openalex.org/W2002755329","https://openalex.org/W2003861094","https://openalex.org/W2037111659","https://openalex.org/W2044038786","https://openalex.org/W2057491831","https://openalex.org/W2058107752","https://openalex.org/W2061098698","https://openalex.org/W2071579644","https://openalex.org/W2075186867","https://openalex.org/W2078374001","https://openalex.org/W2080886752","https://openalex.org/W2094839792","https://openalex.org/W2096525273","https://openalex.org/W2102017976","https://openalex.org/W2121853844","https://openalex.org/W2127553917","https://openalex.org/W2130479394","https://openalex.org/W2138473864","https://openalex.org/W2144571979","https://openalex.org/W2144659448","https://openalex.org/W2147421370","https://openalex.org/W2156207120","https://openalex.org/W2166114438","https://openalex.org/W2210622668","https://openalex.org/W2949387234","https://openalex.org/W4210483668","https://openalex.org/W4230224839","https://openalex.org/W4231041617","https://openalex.org/W6812332919"],"related_works":["https://openalex.org/W2104366126","https://openalex.org/W2547231910","https://openalex.org/W2235675062","https://openalex.org/W2148970764","https://openalex.org/W2011402683","https://openalex.org/W2146844279","https://openalex.org/W2079298303","https://openalex.org/W2014586343","https://openalex.org/W2111131931","https://openalex.org/W2010826470"],"abstract_inverted_index":{"BACKGROUND:":[0],"PubChem,":[1],"an":[2,231,382],"open":[3],"archive":[4],"for":[5,129,154,166,219,237,245,367],"the":[6,30,49,82,93,98,110,119,139,185,190,193,205,256,260,267,316,345,356,392,412],"biological":[7,71],"activities":[8],"of":[9,25,32,42,52,66,100,121,192,234,252,259,283,285,319,344],"small":[10],"molecules,":[11],"provides":[12,381],"search":[13,239,269],"and":[14,114,125,134,216,222,247,299,374,404],"analysis":[15],"tools":[16,27],"to":[17,47,61,69,78,174,293,314,323,331,339,360,386,395,415],"assist":[18],"users":[19],"in":[20,241,266],"locating":[21],"desired":[22],"information.":[23],"Many":[24],"these":[26,305],"focus":[28],"on":[29,391],"notion":[31],"chemical":[33,43,54,67],"structure":[34,44,55],"similarity":[35,41,51],"at":[36,213,276,351],"some":[37],"level.":[38],"PubChem3D":[39,130,413],"enables":[40],"3-D":[45,64,149,159],"conformers":[46],"augment":[48],"existing":[50],"2-D":[53],"graphs.":[56],"It":[57],"is":[58,76,389],"also":[59],"desirable":[60],"relate":[62],"theoretical":[63,83,122,148,194,321,347,417],"descriptions":[65],"structures":[68,160],"experimental":[70],"activity.":[72],"As":[73],"such,":[74],"it":[75],"important":[77],"be":[79],"assured":[80],"that":[81,230,342,380,388],"conformer":[84,103,123,131,135,150,168,195,274,336,354,368,401,418],"models":[85,151,275,348],"can":[86],"reproduce":[87,324,396],"experimentally":[88,162],"determined":[89,126,408],"bioactive":[90,286,325,397],"conformations.":[91,326,398],"In":[92],"present":[94],"study,":[95],"we":[96],"investigate":[97],"effects":[99],"three":[101],"primary":[102,167],"generation":[104,133,169,369,402],"parameters":[105,170,366,403],"(the":[106],"fragment":[107,181],"sampling":[108,182,337,358,384,406],"rate,":[109],"energy":[111,201,232,278],"window":[112,202],"size,":[113],"force":[115,263],"field":[116,264],"variant)":[117],"upon":[118],"accuracy":[120,191,282,318,394],"models,":[124],"optimal":[127,176,400],"settings":[128],"model":[132,196,220],"sampling.":[136],"RESULTS:":[137],"Using":[138,304],"software":[140],"package":[141],"OMEGA":[142,371],"from":[143,255],"OpenEye":[144],"Scientific":[145],"Software,":[146],"Inc.,":[147],"were":[152,161,171,372],"generated":[153],"25,972":[155],"small-molecule":[156],"ligands,":[157],"whose":[158],"determined.":[163,375],"Different":[164],"values":[165,407],"systematically":[172],"tested":[173],"find":[175],"settings.":[177],"Employing":[178],"a":[179,309,320,333,361],"greater":[180],"rate":[183],"than":[184],"default":[186],"did":[187,203],"not":[188],"improve":[189],"ensembles.":[197],"An":[198,376],"ever":[199],"increasing":[200],"increase":[204],"overall":[206],"average":[207,281],"accuracy,":[208],"with":[209,291],"rapid":[210],"convergence":[211],"observed":[212],"10":[214],"kcal/mol":[215,218,236],"15":[217],"building":[221],"torsion":[223,238,268],"search,":[224],"respectively;":[225],"however,":[226],"subsequent":[227],"study":[228],"showed":[229],"threshold":[233],"25":[235],"resulted":[240],"slightly":[242],"improved":[243],"results":[244],"larger":[246],"more":[248,272],"flexible":[249],"structures.":[250],"Exclusion":[251],"coulomb":[253],"terms":[254],"94s":[257],"variant":[258],"Merck":[261],"molecular":[262],"(MMFF94s)":[265],"stage":[270],"gave":[271],"accurate":[273],"lower":[277],"windows.":[279],"Overall":[280],"reproduction":[284],"conformations":[287],"was":[288,312,329,378],"remarkably":[289],"linear":[290],"respect":[292],"both":[294],"non-hydrogen":[295],"atom":[296],"count":[297,302],"(\"size\")":[298],"effective":[300],"rotor":[301],"(\"flexibility\").":[303],"as":[306],"independent":[307],"variables,":[308],"regression":[310],"equation":[311,328,377],"developed":[313,379],"predict":[315],"RMSD":[317,335,357,383,405],"ensemble":[322],"The":[327,399],"modified":[330],"give":[332],"minimum":[334],"value":[338,359,385],"help":[340],"ensure":[341],"90%":[343],"sampled":[346],"should":[349],"contain":[350],"least":[352],"one":[353],"within":[355],"\"bioactive\"":[362],"conformation.":[363],"CONCLUSION:":[364],"Optimal":[365],"using":[370],"explored":[373],"use":[387],"based":[390],"relative":[393],"are":[409],"used":[410],"by":[411],"project":[414],"generate":[416],"models.":[419]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
