{"id":"https://openalex.org/W2117712317","doi":"https://doi.org/10.1186/1758-2946-3-22","title":"Predicting a small molecule-kinase interaction map: A machine learning approach","display_name":"Predicting a small molecule-kinase interaction map: A machine learning approach","publication_year":2011,"publication_date":"2011-06-27","ids":{"openalex":"https://openalex.org/W2117712317","doi":"https://doi.org/10.1186/1758-2946-3-22","mag":"2117712317","pmid":"https://pubmed.ncbi.nlm.nih.gov/21708012"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-3-22","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-22","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-22","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-22","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043584067","display_name":"Fabian Buchwald","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Fabian Buchwald","raw_affiliation_strings":["Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstr, 3, 85748 Garching bei M\u00fcnchen, Germany. kramer@in.tum.de","[Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Garching Bei Munchen, Germany]"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstr, 3, 85748 Garching bei M\u00fcnchen, Germany. kramer@in.tum.de","institution_ids":[]},{"raw_affiliation_string":"[Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Garching Bei Munchen, Germany]","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114259817","display_name":"Lothar Richter","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lothar Richter","raw_affiliation_strings":["Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstr. 3, 85748, Garching bei M\u00fcnchen, Germany","[Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Garching Bei Munchen, Germany]"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstr. 3, 85748, Garching bei M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"[Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Garching Bei Munchen, Germany]","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006247481","display_name":"Stefan Kr\u00e4mer","orcid":"https://orcid.org/0000-0002-0071-9344"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Kramer","raw_affiliation_strings":["Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstr. 3, 85748, Garching bei M\u00fcnchen, Germany","[Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Garching Bei Munchen, Germany]"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstr. 3, 85748, Garching bei M\u00fcnchen, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"[Institut f\u00fcr Informatik, Technische Universit\u00e4t M\u00fcnchen, Garching Bei Munchen, Germany]","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5043584067"],"corresponding_institution_ids":["https://openalex.org/I62916508"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":1.3022,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.81082375,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"3","issue":"1","first_page":"22","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6781150698661804},{"id":"https://openalex.org/keywords/small-molecule","display_name":"Small molecule","score":0.4891541302204132},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3981024920940399},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3630792498588562},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3539913296699524},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2691783308982849},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11160662770271301}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6781150698661804},{"id":"https://openalex.org/C161624437","wikidata":"https://www.wikidata.org/wiki/Q1988322","display_name":"Small molecule","level":2,"score":0.4891541302204132},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3981024920940399},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3630792498588562},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3539913296699524},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2691783308982849},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11160662770271301}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1758-2946-3-22","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-22","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-22","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:21708012","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21708012","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:fc9086619b904872ac130fa19eb485f5","is_oa":true,"landing_page_url":"https://doaj.org/article/fc9086619b904872ac130fa19eb485f5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 3, Iss 1, p 22 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2158394","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3151211","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-3-22","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-22","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-22","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117712317.pdf","grobid_xml":"https://content.openalex.org/works/W2117712317.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1484413656","https://openalex.org/W1504694836","https://openalex.org/W1549439022","https://openalex.org/W1588174079","https://openalex.org/W1972043917","https://openalex.org/W1978253274","https://openalex.org/W2014582878","https://openalex.org/W2025725721","https://openalex.org/W2040324575","https://openalex.org/W2074231493","https://openalex.org/W2084855813","https://openalex.org/W2085504513","https://openalex.org/W2096335861","https://openalex.org/W2100772783","https://openalex.org/W2106882534","https://openalex.org/W2125055259","https://openalex.org/W2125227861","https://openalex.org/W2133990480","https://openalex.org/W2139212933","https://openalex.org/W2144903778","https://openalex.org/W2148972970","https://openalex.org/W2151040995","https://openalex.org/W2215622313","https://openalex.org/W2486095760","https://openalex.org/W2613161123","https://openalex.org/W2747485148","https://openalex.org/W2774846296"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3209574120","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4210805261"],"abstract_inverted_index":{"In":[0],"most":[1],"of":[2,58,71],"the":[3,5,10,20,32,43,55,66],"cases,":[4],"presented":[6],"approach":[7],"clearly":[8],"outperforms":[9],"baseline":[11],"methods":[12,24],"used":[13],"for":[14],"comparison.":[15],"Experimental":[16],"results":[17],"indicate":[18],"that":[19,53],"applied":[21],"machine":[22],"learning":[23],"are":[25],"able":[26],"to":[27,38,76],"detect":[28],"a":[29,59],"signal":[30],"in":[31,65],"data":[33],"and":[34],"predict":[35],"binding":[36,44],"affinity":[37],"some":[39],"extent.":[40],"For":[41,61],"SVMs,":[42],"prediction":[45],"can":[46],"be":[47,77],"improved":[48],"significantly":[49],"by":[50],"using":[51],"features":[52],"describe":[54],"active":[56],"site":[57],"kinase.":[60],"C5,":[62],"besides":[63],"diversity":[64],"feature":[67],"set,":[68],"alignment":[69],"scores":[70],"conserved":[72],"regions":[73],"turned":[74],"out":[75],"very":[78],"useful.":[79]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
