{"id":"https://openalex.org/W2024088210","doi":"https://doi.org/10.1186/1758-2946-3-18","title":"AMBIT RESTful web services: an implementation of the OpenTox application programming interface","display_name":"AMBIT RESTful web services: an implementation of the OpenTox application programming interface","publication_year":2011,"publication_date":"2011-05-16","ids":{"openalex":"https://openalex.org/W2024088210","doi":"https://doi.org/10.1186/1758-2946-3-18","mag":"2024088210","pmid":"https://pubmed.ncbi.nlm.nih.gov/21575202"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-3-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-18","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/1758-2946-3-18","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056989071","display_name":"Nina Jeliazkova","orcid":"https://orcid.org/0000-0002-4322-6179"},"institutions":[{"id":"https://openalex.org/I4210145716","display_name":"IDEAconsult","ror":"https://ror.org/043r2f182","country_code":"BG","type":"other","lineage":["https://openalex.org/I4210145716"]}],"countries":["BG"],"is_corresponding":true,"raw_author_name":"Nina Jeliazkova","raw_affiliation_strings":["Ideaconsult Ltd,, Angel Kanchev Str 4, Sofia 1000, Bulgaria. jeliazkova.nina@gmail.com","Ideaconsult Ltd., Sofia, Bulgaria"],"affiliations":[{"raw_affiliation_string":"Ideaconsult Ltd,, Angel Kanchev Str 4, Sofia 1000, Bulgaria. jeliazkova.nina@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Ideaconsult Ltd., Sofia, Bulgaria","institution_ids":["https://openalex.org/I4210145716"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025102558","display_name":"Vedrin Jeliazkov","orcid":"https://orcid.org/0000-0002-1520-5995"},"institutions":[{"id":"https://openalex.org/I4210145716","display_name":"IDEAconsult","ror":"https://ror.org/043r2f182","country_code":"BG","type":"other","lineage":["https://openalex.org/I4210145716"]}],"countries":["BG"],"is_corresponding":false,"raw_author_name":"Vedrin Jeliazkov","raw_affiliation_strings":["Ideaconsult Ltd., Sofia, Bulgaria"],"affiliations":[{"raw_affiliation_string":"Ideaconsult Ltd., Sofia, Bulgaria","institution_ids":["https://openalex.org/I4210145716"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5056989071"],"corresponding_institution_ids":["https://openalex.org/I4210145716"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":6.5109,"has_fulltext":false,"cited_by_count":79,"citation_normalized_percentile":{"value":0.97126437,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"3","issue":"1","first_page":"18","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9575999975204468,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8682141304016113},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.6455099582672119},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6008856892585754},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.5921480059623718},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5449309945106506},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.4818369150161743},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35538724064826965},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.33158862590789795},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32868891954421997},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.2227765917778015},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14367756247520447}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8682141304016113},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.6455099582672119},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6008856892585754},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.5921480059623718},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5449309945106506},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.4818369150161743},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35538724064826965},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.33158862590789795},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32868891954421997},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.2227765917778015},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14367756247520447},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1758-2946-3-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-18","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:21575202","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21575202","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:ea74bc063e4e4c0db5934ae0dc4a404e","is_oa":true,"landing_page_url":"https://doaj.org/article/ea74bc063e4e4c0db5934ae0dc4a404e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 3, Iss 1, p 18 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3120779","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3120779","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-3-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-18","pdf_url":null,"source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307765","display_name":"Pfizer","ror":"https://ror.org/01xdqrp08"},{"id":"https://openalex.org/F4320311246","display_name":"European Chemical Industry Council","ror":"https://ror.org/00j6a4d92"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W158210963","https://openalex.org/W651446335","https://openalex.org/W1535015034","https://openalex.org/W1540105270","https://openalex.org/W1561051808","https://openalex.org/W1570912112","https://openalex.org/W1585912603","https://openalex.org/W1760020844","https://openalex.org/W1972793074","https://openalex.org/W1974254541","https://openalex.org/W2038638444","https://openalex.org/W2050164905","https://openalex.org/W2054353156","https://openalex.org/W2084087750","https://openalex.org/W2097195817","https://openalex.org/W2098889731","https://openalex.org/W2101251493","https://openalex.org/W2122025333","https://openalex.org/W2148797284","https://openalex.org/W2160785561","https://openalex.org/W2163763098","https://openalex.org/W2169080911","https://openalex.org/W2340513558","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2120447654","https://openalex.org/W2977179488","https://openalex.org/W2776293731","https://openalex.org/W2965230088","https://openalex.org/W4293389049","https://openalex.org/W1534806717","https://openalex.org/W2550790379","https://openalex.org/W2610919777","https://openalex.org/W4243630814","https://openalex.org/W2296339156"],"abstract_inverted_index":{"The":[0,33,154,192,234,260,280,329],"AMBIT":[1,124,135],"web":[2,94,108,125,251,258,282,347,368],"services":[3,95,126,193,302,362],"package":[4,127],"is":[5,20,67,241,339],"one":[6],"of":[7,13,26,134,156,182,225,238,291,312,331,354],"the":[8,14,24,27,41,44,121,138,168,222,239,244,326,333,336,361,380],"several":[9,190,198],"existing":[10,383],"independent":[11,322],"implementations":[12],"OpenTox":[15,47,150,337],"Application":[16],"Programming":[17],"Interface":[18],"and":[19,58,87,147,158,179,203,213,236,278,297,315],"built":[21],"according":[22,324],"to":[23,55,82,111,140,197,210,243,256,264,274,286,325],"principles":[25],"Representational":[28],"State":[29],"Transfer":[30],"(REST)":[31],"architecture.":[32],"Open":[34],"Source":[35],"Predictive":[36],"Toxicology":[37],"Framework,":[38],"developed":[39,130],"by":[40,69],"partners":[42],"in":[43,161,189,319,351,382],"EC":[45],"FP7":[46],"project,":[48],"aims":[49],"at":[50,298],"providing":[51,148],"a":[52,76,91,106,250,257,307,320,345,352,364],"unified":[53,195],"access":[54],"toxicity":[56,214],"data":[57,86,100,157,248,316],"predictive":[59,103],"models,":[60],"as":[61,63,131,170,207,209,272,306,376,378],"well":[62,208,273,377],"validation":[64],"procedures.":[65],"This":[66],"achieved":[68],"i)":[70],"an":[71,132,149,288],"information":[72],"model,":[73],"based":[74],"on":[75],"common":[77],"OWL-DL":[78],"ontology":[79],"ii)":[80],"links":[81],"related":[83],"ontologies;":[84],"iii)":[85],"algorithms,":[88,206],"available":[89,187],"through":[90],"standardized":[92],"REST":[93],"interface,":[96],"where":[97],"every":[98],"compound,":[99],"set":[101,181],"or":[102,119,318],"method":[104],"has":[105,128],"unique":[107],"address,":[109,252],"used":[110,305],"retrieve":[112],"its":[113],"Resource":[114,163],"Description":[115,164],"Framework":[116,165],"(RDF)":[117],"representation,":[118],"initiate":[120],"associated":[122],"calculations.The":[123],"been":[129],"extension":[133],"modules,":[136],"adding":[137],"ability":[139],"create":[141],"(Quantitative)":[142],"Structure-Activity":[143],"Relationship":[144],"(QSAR)":[145],"models":[146],"API":[151,338],"compliant":[152],"interface.":[153],"representation":[155],"processing":[159,240,311],"resources":[160,169],"W3C":[162],"facilitates":[166],"integrating":[167],"Linked":[171],"Data.":[172],"By":[173],"uploading":[174],"datasets":[175,277],"with":[176,373],"chemical":[177,226],"structures":[178],"arbitrary":[180,289],"properties,":[183],"they":[184],"become":[185],"automatically":[186],"online":[188,261,276],"formats.":[191],"provide":[194,363],"interfaces":[196],"descriptor":[199],"calculation,":[200],"machine":[201],"learning":[202],"similarity":[204],"searching":[205],"applicability":[211],"domain":[212],"prediction":[215],"models.":[216,279],"All":[217],"Toxtree":[218],"modules":[219],"for":[220,294,310,366],"predicting":[221],"toxicological":[223],"hazard":[224],"compounds":[227],"are":[228],"also":[229,350],"integrated":[230],"within":[231,344],"this":[232],"package.":[233],"complexity":[235],"diversity":[237],"reduced":[242],"simple":[245],"paradigm":[246],"\"read":[247],"from":[249],"perform":[253],"processing,":[254],"write":[255],"address\".":[259],"service":[262,292],"allows":[263,284],"easily":[265],"run":[266],"predictions,":[267],"without":[268],"installing":[269],"any":[270],"software,":[271],"share":[275],"downloadable":[281],"application":[283],"researchers":[285],"setup":[287],"number":[290],"instances":[293],"specific":[295,327],"purposes":[296],"suitable":[299],"locations.":[300],"These":[301],"could":[303],"be":[304],"distributed":[308,355],"framework":[309],"resource-intensive":[313],"tasks":[314],"sharing":[317],"fully":[321],"way,":[323],"needs.":[328],"advantage":[330],"exposing":[332],"functionality":[334],"via":[335],"seamless":[340],"interoperability,":[341],"not":[342,359],"only":[343],"single":[346],"application,":[348],"but":[349,358],"network":[353],"services.":[356],"Last,":[357],"least,":[360],"basis":[365],"building":[367],"mashups,":[369],"end":[370],"user":[371],"applications":[372],"friendly":[374],"GUIs,":[375],"embedding":[379],"functionalities":[381],"workflow":[384],"systems.":[385]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":9}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
