{"id":"https://openalex.org/W2152932486","doi":"https://doi.org/10.1186/1758-2946-3-11","title":"Interpreting linear support vector machine models with heat map molecule coloring","display_name":"Interpreting linear support vector machine models with heat map molecule coloring","publication_year":2011,"publication_date":"2011-03-25","ids":{"openalex":"https://openalex.org/W2152932486","doi":"https://doi.org/10.1186/1758-2946-3-11","mag":"2152932486","pmid":"https://pubmed.ncbi.nlm.nih.gov/21439031"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-3-11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-11","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-11","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-11","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071201024","display_name":"Lars Rosenbaum","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Lars Rosenbaum","raw_affiliation_strings":["University of T\u00fcbingen, Center for Bioinformatics (ZBIT), Sand 1, 72076 T\u00fcbingen, Germany. lars.rosenbaum@uni-tuebingen.de","University of T\u00fcbingen, Center for Bioinformatics (ZBIT), Sand 1, 72076, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"University of T\u00fcbingen, Center for Bioinformatics (ZBIT), Sand 1, 72076 T\u00fcbingen, Germany. lars.rosenbaum@uni-tuebingen.de","institution_ids":[]},{"raw_affiliation_string":"University of T\u00fcbingen, Center for Bioinformatics (ZBIT), Sand 1, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035710038","display_name":"Georg Hinselmann","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Georg Hinselmann","raw_affiliation_strings":["University of T\u00fcbingen, Center for Bioinformatics (ZBIT), Sand 1, 72076, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"University of T\u00fcbingen, Center for Bioinformatics (ZBIT), Sand 1, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066354297","display_name":"Andreas Jahn","orcid":"https://orcid.org/0000-0003-0207-0224"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Jahn","raw_affiliation_strings":["University of T\u00fcbingen, Center for Bioinformatics (ZBIT), Sand 1, 72076, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"University of T\u00fcbingen, Center for Bioinformatics (ZBIT), Sand 1, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004958444","display_name":"Andreas Zell","orcid":"https://orcid.org/0000-0003-3299-2211"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Zell","raw_affiliation_strings":["University of T\u00fcbingen, Center for Bioinformatics (ZBIT), Sand 1, 72076, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"University of T\u00fcbingen, Center for Bioinformatics (ZBIT), Sand 1, 72076, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5071201024"],"corresponding_institution_ids":["https://openalex.org/I8087733"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":4.8832,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.95667551,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"3","issue":"1","first_page":"11","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9623000025749207,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6804581880569458},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6743190288543701},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.6210786700248718},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5995025634765625},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.5911923050880432},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.527283251285553},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5046237707138062},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47914260625839233},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.45847418904304504},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.43625307083129883},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.42023614048957825},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3297910690307617},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24286720156669617}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6804581880569458},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6743190288543701},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.6210786700248718},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5995025634765625},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.5911923050880432},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.527283251285553},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5046237707138062},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47914260625839233},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.45847418904304504},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.43625307083129883},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.42023614048957825},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3297910690307617},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24286720156669617},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1758-2946-3-11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-11","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-11","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:21439031","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21439031","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6bb5b053345645468642c904f2a5cf2d","is_oa":true,"landing_page_url":"https://doaj.org/article/6bb5b053345645468642c904f2a5cf2d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 3, Iss 1, p 11 (2011)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2086231","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3076244","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-3-11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-3-11","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-3-11","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8299999833106995}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152932486.pdf","grobid_xml":"https://content.openalex.org/works/W2152932486.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W78571512","https://openalex.org/W1560724230","https://openalex.org/W1942192923","https://openalex.org/W1964513093","https://openalex.org/W1970651561","https://openalex.org/W1973468162","https://openalex.org/W1977340881","https://openalex.org/W1983610905","https://openalex.org/W1984635143","https://openalex.org/W1988037271","https://openalex.org/W1988807132","https://openalex.org/W2010700988","https://openalex.org/W2017978384","https://openalex.org/W2038299059","https://openalex.org/W2038702914","https://openalex.org/W2048429496","https://openalex.org/W2057069496","https://openalex.org/W2063095196","https://openalex.org/W2081301924","https://openalex.org/W2082299245","https://openalex.org/W2118585731","https://openalex.org/W2119479037","https://openalex.org/W2121780366","https://openalex.org/W2148797284","https://openalex.org/W2152083794","https://openalex.org/W2322193123","https://openalex.org/W2792455800","https://openalex.org/W3023786531","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W4361193272","https://openalex.org/W4310278675","https://openalex.org/W2806259446","https://openalex.org/W2963326959","https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W2594726310","https://openalex.org/W2355193834","https://openalex.org/W2907597838"],"abstract_inverted_index":{"In":[0],"combination":[1],"with":[2],"heat":[3,46],"map":[4,47],"coloring,":[5],"linear":[6],"support":[7],"vector":[8],"machine":[9],"models":[10],"can":[11],"help":[12],"to":[13,54,63],"guide":[14],"the":[15,69],"modification":[16],"of":[17,23,41,68,72],"a":[18,36,42,65],"compound":[19],"in":[20],"later":[21],"stages":[22],"drug":[24],"discovery.":[25],"Particularly":[26],"substructures":[27],"identified":[28],"as":[29,52],"important":[30],"by":[31],"our":[32],"method":[33],"might":[34],"be":[35,50],"starting":[37],"point":[38],"for":[39],"optimization":[40],"lead":[43],"compound.":[44],"The":[45],"coloring":[48],"should":[49],"considered":[51],"complementary":[53],"structure":[55],"based":[56],"modeling":[57],"approaches.":[58],"As":[59],"such,":[60],"it":[61],"helps":[62],"get":[64],"better":[66],"understanding":[67],"binding":[70],"mode":[71],"an":[73],"inhibitor.":[74]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
