{"id":"https://openalex.org/W2127481461","doi":"https://doi.org/10.1186/1758-2946-2-6","title":"WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications","display_name":"WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications","publication_year":2010,"publication_date":"2010-08-20","ids":{"openalex":"https://openalex.org/W2127481461","doi":"https://doi.org/10.1186/1758-2946-2-6","mag":"2127481461","pmid":"https://pubmed.ncbi.nlm.nih.gov/20727184"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-2-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-2-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-2-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-2-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073074181","display_name":"Qian Zhu","orcid":"https://orcid.org/0000-0002-4858-6333"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qian Zhu","raw_affiliation_strings":["School of Informatics and Computing, Indiana University, Bloomington, IN, USA. djwild@indiana.edu","School of Informatics and Computing, Indiana University Bloomington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, Indiana University, Bloomington, IN, USA. djwild@indiana.edu","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"School of Informatics and Computing, Indiana University Bloomington, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021106800","display_name":"Michael S. Lajiness","orcid":"https://orcid.org/0000-0002-6813-1512"},"institutions":[{"id":"https://openalex.org/I168537998","display_name":"Eli Lilly (United States)","ror":"https://ror.org/01qat3289","country_code":"US","type":"company","lineage":["https://openalex.org/I168537998"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael S Lajiness","raw_affiliation_strings":["Eli Lilly and Company, Indianapolis, IN, USA","Eli Lilly and Company Indianapolis USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Eli Lilly and Company, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I168537998"]},{"raw_affiliation_string":"Eli Lilly and Company Indianapolis USA","institution_ids":["https://openalex.org/I168537998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047170063","display_name":"Ying Ding","orcid":"https://orcid.org/0000-0003-2567-2009"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Ding","raw_affiliation_strings":["School of Library & Information Science, Indiana University, Bloomington, IN, USA","School of Library and Information Science, Indiana University Bloomington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Library & Information Science, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"School of Library and Information Science, Indiana University Bloomington, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002092202","display_name":"David Wild","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David J Wild","raw_affiliation_strings":["School of Informatics and Computing, Indiana University, Bloomington, IN, USA","School of Informatics and Computing, Indiana University Bloomington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"School of Informatics and Computing, Indiana University Bloomington, USA","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5002092202"],"corresponding_institution_ids":["https://openalex.org/I4210119109"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":3.404,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.92942558,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2","issue":"1","first_page":"6","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4848000109195709,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4848000109195709,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.40450000762939453,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.04580000042915344,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5837985277175903},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5472089052200317},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3477499485015869},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3275741934776306},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3259677588939667},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15900033712387085}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5837985277175903},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5472089052200317},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3477499485015869},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3275741934776306},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3259677588939667},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15900033712387085}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1758-2946-2-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-2-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-2-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:20727184","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20727184","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:cf6eeeb5e59f4d5ea62f9987ed277b23","is_oa":false,"landing_page_url":"https://doaj.org/article/cf6eeeb5e59f4d5ea62f9987ed277b23","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 2, Iss 1, p 6 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2933596","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2933596","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:scholarworks.iu.edu:2022/13963","is_oa":true,"landing_page_url":"http://hdl.handle.net/2022/13963","pdf_url":null,"source":{"id":"https://openalex.org/S4306400988","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-2-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-2-6","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-2-6","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307758","display_name":"Eli Lilly and Company","ror":"https://ror.org/01qat3289"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127481461.pdf","grobid_xml":"https://content.openalex.org/works/W2127481461.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W158210963","https://openalex.org/W977704452","https://openalex.org/W1010927513","https://openalex.org/W1516152848","https://openalex.org/W1539167405","https://openalex.org/W1605923270","https://openalex.org/W1978430591","https://openalex.org/W2007069550","https://openalex.org/W2019543926","https://openalex.org/W2026944355","https://openalex.org/W2057350662","https://openalex.org/W2099830218","https://openalex.org/W2119826980","https://openalex.org/W2125877278","https://openalex.org/W2156697464","https://openalex.org/W2156877380","https://openalex.org/W2159330994","https://openalex.org/W2165428180","https://openalex.org/W2176720124","https://openalex.org/W2197056051","https://openalex.org/W2200017991","https://openalex.org/W2481034370","https://openalex.org/W4241509948"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,71],"recent":[2],"years,":[3],"there":[4,23],"has":[5],"been":[6],"a":[7,25,97,122,149],"huge":[8],"increase":[9],"in":[10,38,177,189],"the":[11,77,162,202],"amount":[12],"of":[13,28,66,79,182],"publicly-available":[14],"and":[15,37,68,100,106,133,136,164,188,192],"proprietary":[16],"information":[17,45,110,194],"pertinent":[18],"to":[19,33,58,92,157,204],"drug":[20],"discovery.":[21],"However,":[22],"is":[24,175],"distinct":[26],"lack":[27],"data":[29],"mining":[30,65],"tools":[31,62,215],"available":[32],"harness":[34],"this":[35,72,143,158,173,218],"information,":[36],"particular":[39],"for":[40,63,86,131],"knowledge":[41],"discovery":[42],"across":[43],"multiple":[44,109,128,196],"sources.":[46,111,197],"At":[47],"Indiana":[48],"University":[49],"we":[50,74],"have":[51,114,146],"an":[52,116,138,154],"ongoing":[53],"project":[54],"with":[55],"Eli":[56],"Lilly":[57],"develop":[59],"web-service":[60],"based":[61,216],"integrative":[64],"chemical":[67],"biological":[69,103,180],"information.":[70,144],"paper,":[73],"report":[75],"on":[76,201,217],"first":[78],"these":[80],"tools,":[81],"called":[82],"WENDI":[83],"(Web":[84],"Engine":[85],"Non-obvious":[87],"Drug":[88],"Information)":[89],"that":[90,120,141,152,184],"attempts":[91],"find":[93],"non-obvious":[94],"relationships":[95],"between":[96],"query":[98,123],"compound":[99,124],"scholarly":[101],"publications,":[102],"properties,":[104],"genes":[105],"diseases":[107],"using":[108],"RESULTS:":[112],"We":[113,145,198,210],"created":[115],"aggregate":[117],"web":[118,129,159],"service":[119,163],"takes":[121],"as":[125],"input,":[126],"calls":[127],"services":[130],"computation":[132],"database":[134],"search,":[135],"returns":[137],"XML":[139],"file":[140],"aggregates":[142],"also":[147],"developed":[148],"client":[150,165],"application":[151],"provides":[153],"easy-to-use":[155],"interface":[156],"service.":[160],"Both":[161],"are":[166,185,211],"publicly":[167],"available.":[168],"CONCLUSIONS:":[169],"Initial":[170],"testing":[171],"indicates":[172],"tool":[174,203],"useful":[176],"identifying":[178,190],"potential":[179],"applications":[181],"compounds":[183],"not":[186],"obvious,":[187],"corroborating":[191],"conflicting":[193],"from":[195],"encourage":[199],"feedback":[200],"help":[205],"us":[206],"refine":[207],"it":[208],"further.":[209],"now":[212],"developing":[213],"further":[214],"model.":[219]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":10}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}