{"id":"https://openalex.org/W2116443323","doi":"https://doi.org/10.1186/1758-2946-1-5","title":"Evaluation of a Bayesian inference network for ligand-based virtual screening","display_name":"Evaluation of a Bayesian inference network for ligand-based virtual screening","publication_year":2009,"publication_date":"2009-04-29","ids":{"openalex":"https://openalex.org/W2116443323","doi":"https://doi.org/10.1186/1758-2946-1-5","mag":"2116443323","pmid":"https://pubmed.ncbi.nlm.nih.gov/20298523"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-1-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-1-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-1-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-1-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020099630","display_name":"Beining Chen","orcid":"https://orcid.org/0000-0003-4771-218X"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Beining Chen","raw_affiliation_strings":["Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, S10 2TN, UK. p.willett@sheffield.ac.uk","Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, S10 2TN, UK. p.willett@sheffield.ac.uk","institution_ids":[]},{"raw_affiliation_string":"Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048502650","display_name":"Christoph Mueller","orcid":"https://orcid.org/0000-0001-9816-1686"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christoph Mueller","raw_affiliation_strings":["Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, S10 2TN, UK","Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, S10 2TN, UK","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102885255","display_name":"Peter Willett","orcid":"https://orcid.org/0000-0003-4591-7173"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter Willett","raw_affiliation_strings":["Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, S10 2TN, UK","Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, S10 2TN, UK","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Krebs Institute for Biomolecular Research, Departments of Chemistry and of Information Studies, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5020099630"],"corresponding_institution_ids":["https://openalex.org/I91136226"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.1267,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.87333897,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"1","issue":"1","first_page":"5","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9490000009536743,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9490000009536743,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.022600000724196434,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0071000000461936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.8446713089942932},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6960479021072388},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6956416368484497},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.6407223343849182},{"id":"https://openalex.org/keywords/bayesian-inference","display_name":"Bayesian inference","score":0.4864318370819092},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.4754621386528015},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44135791063308716},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4084995985031128},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3966817557811737},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3565635085105896},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.24286121129989624},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21859315037727356}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.8446713089942932},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6960479021072388},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6956416368484497},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.6407223343849182},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.4864318370819092},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.4754621386528015},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44135791063308716},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4084995985031128},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3966817557811737},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3565635085105896},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.24286121129989624},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21859315037727356},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1758-2946-1-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-1-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-1-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:20298523","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20298523","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:eprints.whiterose.ac.uk:9788","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:5934ae60478846e0a0a656682baddcb3","is_oa":false,"landing_page_url":"https://doaj.org/article/5934ae60478846e0a0a656682baddcb3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 1, Iss 1, p 5 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3225873","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3225873","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-1-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-1-5","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-1-5","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1756790272","display_name":null,"funder_award_id":"BB/E014119/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116443323.pdf","grobid_xml":"https://content.openalex.org/works/W2116443323.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W29665","https://openalex.org/W646628079","https://openalex.org/W1531524766","https://openalex.org/W1963790256","https://openalex.org/W1970651561","https://openalex.org/W1972976101","https://openalex.org/W1978394996","https://openalex.org/W1980515494","https://openalex.org/W1984518758","https://openalex.org/W1993492933","https://openalex.org/W2000541041","https://openalex.org/W2001816314","https://openalex.org/W2002664886","https://openalex.org/W2005685204","https://openalex.org/W2006348601","https://openalex.org/W2019538911","https://openalex.org/W2035180565","https://openalex.org/W2037140704","https://openalex.org/W2042007894","https://openalex.org/W2042110087","https://openalex.org/W2049870103","https://openalex.org/W2052943632","https://openalex.org/W2058190282","https://openalex.org/W2060531713","https://openalex.org/W2071200203","https://openalex.org/W2076942392","https://openalex.org/W2077946617","https://openalex.org/W2078875869","https://openalex.org/W2086253379","https://openalex.org/W2087302012","https://openalex.org/W2087663869","https://openalex.org/W2094493457","https://openalex.org/W2096729078","https://openalex.org/W2113820449","https://openalex.org/W2125253492","https://openalex.org/W2128863117","https://openalex.org/W2139731838","https://openalex.org/W2144211451","https://openalex.org/W2151175139","https://openalex.org/W2158024647","https://openalex.org/W2162746367","https://openalex.org/W2320034101","https://openalex.org/W2949504121","https://openalex.org/W2950403611"],"related_works":["https://openalex.org/W2372267530","https://openalex.org/W2969189870","https://openalex.org/W3015855446","https://openalex.org/W4303857162","https://openalex.org/W2965643117","https://openalex.org/W2407375987","https://openalex.org/W2505726097","https://openalex.org/W2950975704","https://openalex.org/W2010643158","https://openalex.org/W3049691116"],"abstract_inverted_index":{"BACKGROUND:":[0],"Bayesian":[1,41,64,92,150],"inference":[2,42,65,93,151],"networks":[3,66],"enable":[4,39],"the":[5,8,36,84,105,120,131,134],"computation":[6],"of":[7,26,58,61,73,79,114,133,143],"probability":[9,60],"that":[10,90],"an":[11,154],"event":[12],"will":[13],"occur.":[14],"They":[15],"have":[16,110],"been":[17],"used":[18,46,97],"previously":[19],"to":[20,29,38,44,98,157],"rank":[21],"textual":[22],"documents":[23],"in":[24,56,117],"order":[25,57],"decreasing":[27,59],"relevance":[28],"a":[30,40,52,91,111,124],"user-defined":[31],"query.":[32],"Here,":[33],"we":[34],"modify":[35],"approach":[37],"network":[43,74,94,121,135,152],"be":[45,96],"for":[47,160],"chemical":[48],"similarity":[49,127],"searching,":[50],"where":[51],"database":[53],"is":[54,136],"ranked":[55],"bioactivity.":[62],"RESULTS:":[63],"were":[67],"implemented":[68],"using":[69],"two":[70],"different":[71,77],"types":[72,78],"and":[75,86],"four":[76],"belief":[80],"function.":[81],"Experiments":[82],"with":[83],"MDDR":[85],"WOMBAT":[87],"databases":[88],"show":[89],"can":[95],"provide":[99],"effective":[100],"ligand-based":[101,161],"screening,":[102],"especially":[103],"when":[104,139],"active":[106],"molecules":[107],"being":[108,146],"sought":[109],"high":[112],"degree":[113],"structural":[115],"homogeneity;":[116],"such":[118],"cases,":[119],"substantially":[122],"out-performs":[123],"conventional,":[125],"Tanimoto-based":[126],"searching":[128],"system.":[129],"However,":[130],"effectiveness":[132],"much":[137],"less":[138],"structurally":[140],"heterogeneous":[141],"sets":[142],"actives":[144],"are":[145],"sought.":[147],"CONCLUSION:":[148],"A":[149],"provides":[153],"interesting":[155],"alternative":[156],"existing":[158],"tools":[159],"virtual":[162],"screening.":[163]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
