{"id":"https://openalex.org/W2164319470","doi":"https://doi.org/10.1186/1758-2946-1-18","title":"Software platform virtualization in chemistry research and university teaching","display_name":"Software platform virtualization in chemistry research and university teaching","publication_year":2009,"publication_date":"2009-11-16","ids":{"openalex":"https://openalex.org/W2164319470","doi":"https://doi.org/10.1186/1758-2946-1-18","mag":"2164319470","pmid":"https://pubmed.ncbi.nlm.nih.gov/20150997"},"language":"en","primary_location":{"id":"doi:10.1186/1758-2946-1-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-1-18","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-1-18","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-1-18","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030581253","display_name":"Tobias Kind","orcid":"https://orcid.org/0000-0002-1908-4916"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tobias Kind","raw_affiliation_strings":["UC Davis Genome Center, Metabolomics, 451 Health Sci Drive, Davis, California, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis Genome Center, Metabolomics, 451 Health Sci Drive, Davis, California, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054356829","display_name":"Tim Leamy","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tim Leamy","raw_affiliation_strings":["UC Davis IET, Academic Technology Services, Surge II, Hutchison Drive, Davis, California, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis IET, Academic Technology Services, Surge II, Hutchison Drive, Davis, California, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041808926","display_name":"Julie A. Leary","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julie A Leary","raw_affiliation_strings":["UC Davis, Department of Molecular and Cellular Biology, 1 Shields Rd, Davis, California, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis, Department of Molecular and Cellular Biology, 1 Shields Rd, Davis, California, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087349635","display_name":"Oliver Fiehn","orcid":"https://orcid.org/0000-0002-6261-8928"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Oliver Fiehn","raw_affiliation_strings":["UC Davis Genome Center, Metabolomics, 451 Health Sci Drive, Davis, California, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis Genome Center, Metabolomics, 451 Health Sci Drive, Davis, California, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5087349635"],"corresponding_institution_ids":["https://openalex.org/I84218800"],"apc_list":{"value":2190,"currency":"USD","value_usd":2190},"apc_paid":{"value":2190,"currency":"USD","value_usd":2190},"fwci":2.0733,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.89533572,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"1","issue":"1","first_page":"18","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11283","display_name":"Experimental Learning in Engineering","score":0.22689999639987946,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11283","display_name":"Experimental Learning in Engineering","score":0.22689999639987946,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.1868000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.13300000131130219,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6857010126113892},{"id":"https://openalex.org/keywords/virtualization","display_name":"Virtualization","score":0.6111843585968018},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5498231053352356},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.43512219190597534},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4035845398902893},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.38599085807800293},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3520834445953369},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.328549861907959},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.1333308219909668}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6857010126113892},{"id":"https://openalex.org/C513985346","wikidata":"https://www.wikidata.org/wiki/Q270471","display_name":"Virtualization","level":3,"score":0.6111843585968018},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5498231053352356},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.43512219190597534},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4035845398902893},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38599085807800293},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3520834445953369},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.328549861907959},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.1333308219909668}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1758-2946-1-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-1-18","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-1-18","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2820496","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2820496","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmid:20150997","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20150997","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:dc1ab466973c4abeb8041f142c6d76fd","is_oa":false,"landing_page_url":"https://doaj.org/article/dc1ab466973c4abeb8041f142c6d76fd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 1, Iss 1, p 18 (2009)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1758-2946-1-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1758-2946-1-18","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/1758-2946-1-18","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G8099377557","display_name":"Arabidopsis 2010:   Metabolomics:   A Functional Genomics Tool for Deciphering Functions of Arabidopsis Genes in the Context of Metabolic and Regulatory Networks","funder_award_id":"0820823","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332564","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69"},{"id":"https://openalex.org/F4320337397","display_name":"Division of Molecular and Cellular Biosciences","ror":"https://ror.org/002jdaq33"},{"id":"https://openalex.org/F4320337813","display_name":"Genome Center, University of California, Davis","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2164319470.pdf","grobid_xml":"https://content.openalex.org/works/W2164319470.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1828735316","https://openalex.org/W1889911728","https://openalex.org/W1972250388","https://openalex.org/W1979597489","https://openalex.org/W1981878249","https://openalex.org/W1988598882","https://openalex.org/W2015283914","https://openalex.org/W2018250706","https://openalex.org/W2031452441","https://openalex.org/W2037852873","https://openalex.org/W2045880951","https://openalex.org/W2048322245","https://openalex.org/W2048384644","https://openalex.org/W2049961577","https://openalex.org/W2059441324","https://openalex.org/W2062188949","https://openalex.org/W2066229600","https://openalex.org/W2066559205","https://openalex.org/W2067990367","https://openalex.org/W2075234145","https://openalex.org/W2075326868","https://openalex.org/W2082601576","https://openalex.org/W2093404056","https://openalex.org/W2098889731","https://openalex.org/W2099927064","https://openalex.org/W2100307718","https://openalex.org/W2100766815","https://openalex.org/W2110462748","https://openalex.org/W2114754207","https://openalex.org/W2121792371","https://openalex.org/W2125895608","https://openalex.org/W2130994761","https://openalex.org/W2136466435","https://openalex.org/W2139846209","https://openalex.org/W2140854297","https://openalex.org/W2147090459","https://openalex.org/W2148797284","https://openalex.org/W2158498587","https://openalex.org/W2295240344","https://openalex.org/W2463788756","https://openalex.org/W3009780981","https://openalex.org/W4255439355"],"related_works":["https://openalex.org/W1950051066","https://openalex.org/W1973516247","https://openalex.org/W2271326670","https://openalex.org/W2552925293","https://openalex.org/W1996880143","https://openalex.org/W1478590381","https://openalex.org/W3074768883","https://openalex.org/W2384916795","https://openalex.org/W1039201998","https://openalex.org/W2779209348"],"abstract_inverted_index":{"BACKGROUND:":[0],"Modern":[1],"chemistry":[2,75,94],"laboratories":[3],"operate":[4],"with":[5,244],"a":[6,39,50,119,196,229],"wide":[7],"range":[8],"of":[9,25,71,128,155,178,215,263],"software":[10,27,88,95,133,151,156,169,220,236,239],"applications":[11,37],"under":[12],"different":[13,29,158],"operating":[14,53,59,159,193],"systems,":[15],"such":[16],"as":[17,228,268,270],"Windows,":[18],"LINUX":[19],"or":[20],"Mac":[21],"OS":[22],"X.":[23],"Instead":[24],"installing":[26],"on":[28,38,61,195],"computers":[30,254],"it":[31],"is":[32,109,148],"possible":[33],"to":[34,55,114,163,202,252,266],"install":[35],"those":[36],"single":[40,51,197],"computer":[41,136],"using":[42,106],"Virtual":[43,81],"Machine":[44],"software.":[45],"Software":[46,116,140],"platform":[47],"virtualization":[48,117,141,168],"allows":[49,122],"guest":[52],"system":[54,231],"execute":[56],"multiple":[57,93,190,253],"other":[58],"systems":[60,194],"the":[62,69,101,167,176,182,261,271],"same":[63],"computer.":[64],"We":[65,259],"apply":[66],"and":[67,77,90,111,125,130,146,153,174,192,205,223,235,247],"discuss":[68,260],"use":[70,127,177,214],"virtual":[72,107,183,216,245],"machines":[73,82,108,217,246],"in":[74,118,134,142,181,209],"research":[76,211],"teaching":[78,120,137,257],"laboratories.":[79],"RESULTS:":[80],"are":[83,248],"commonly":[84],"used":[85,227],"for":[86,105,150,157,232,255],"cheminformatics":[87,147,267,273],"development":[89,154],"testing.":[91,237],"Benchmarking":[92],"packages":[96],"we":[97],"have":[98],"confirmed":[99],"that":[100],"computational":[102],"speed":[103],"penalty":[104],"low":[110],"around":[112],"5%":[113],"10%.":[115],"environment":[121],"faster":[123],"deployment":[124],"easy":[126],"commercial":[129],"open":[131],"source":[132],"hands-on":[135,256],"labs.":[138,212],"CONCLUSION:":[139],"chemistry,":[143],"mass":[144],"spectrometry":[145],"needed":[149],"testing":[152],"systems.":[160],"In":[161],"order":[162],"obtain":[164],"maximum":[165],"performance":[166],"should":[170],"be":[171,242],"multi-core":[172],"enabled":[173],"allow":[175],"multiprocessor":[179],"configurations":[180],"machine":[184],"environment.":[185],"Server":[186],"consolidation,":[187],"by":[188],"running":[189],"tasks":[191],"physical":[198],"machine,":[199],"can":[200,218,241],"lead":[201],"lower":[203],"maintenance":[204],"hardware":[206],"costs":[207],"especially":[208],"small":[210],"The":[213],"prevent":[219],"virus":[221],"infections":[222],"security":[224],"breaches":[225],"when":[226],"sandbox":[230],"internet":[233],"access":[234],"Complex":[238],"setups":[240],"created":[243],"easily":[249],"deployed":[250],"later":[251],"classes.":[258],"popularity":[262],"bioinformatics":[264],"compared":[265],"well":[269],"missing":[272],"education":[274],"at":[275],"universities":[276],"worldwide.":[277]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
