{"id":"https://openalex.org/W2030767781","doi":"https://doi.org/10.1186/1756-0381-7-3","title":"Mycoplasma contamination in the 1000 Genomes Project","display_name":"Mycoplasma contamination in the 1000 Genomes Project","publication_year":2014,"publication_date":"2014-04-28","ids":{"openalex":"https://openalex.org/W2030767781","doi":"https://doi.org/10.1186/1756-0381-7-3","mag":"2030767781","pmid":"https://pubmed.ncbi.nlm.nih.gov/24872843"},"language":"en","primary_location":{"id":"doi:10.1186/1756-0381-7-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-7-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-7-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-7-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112258107","display_name":"William B. Langdon","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"William B Langdon","raw_affiliation_strings":["Department of Computer Science, University College London, Gower Street, London WC1E 6BT, UK","Dept. of Comput. Sci., Univ. Coll. London, London, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University College London, Gower Street, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. Coll. London, London, UK#TAB#","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5112258107"],"corresponding_institution_ids":["https://openalex.org/I45129253"],"apc_list":{"value":2490,"currency":"USD","value_usd":2490},"apc_paid":{"value":2490,"currency":"USD","value_usd":2490},"fwci":2.8459,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.89660645,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.022099999710917473,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6296987533569336},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.5759336948394775},{"id":"https://openalex.org/keywords/mycoplasma","display_name":"Mycoplasma","score":0.5489214658737183},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42379799485206604},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4084707796573639},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37089383602142334},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3516252040863037},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2811301350593567},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11903390288352966}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6296987533569336},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.5759336948394775},{"id":"https://openalex.org/C2778838687","wikidata":"https://www.wikidata.org/wiki/Q210975","display_name":"Mycoplasma","level":2,"score":0.5489214658737183},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42379799485206604},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4084707796573639},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37089383602142334},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3516252040863037},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2811301350593567},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11903390288352966}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1756-0381-7-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-7-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-7-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:24872843","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24872843","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1413303","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/1413303/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining , 7 , Article 3. (2014)","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:3008599","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4022254","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1756-0381-7-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-7-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-7-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.8199999928474426}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2030767781.pdf","grobid_xml":"https://content.openalex.org/works/W2030767781.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W19006774","https://openalex.org/W988028541","https://openalex.org/W1495589426","https://openalex.org/W1687604884","https://openalex.org/W1725430864","https://openalex.org/W1964176698","https://openalex.org/W1995875735","https://openalex.org/W2041905826","https://openalex.org/W2047242127","https://openalex.org/W2099328768","https://openalex.org/W2121157366","https://openalex.org/W2124985265","https://openalex.org/W2127041368","https://openalex.org/W2154362705","https://openalex.org/W2158714788","https://openalex.org/W2171777347","https://openalex.org/W2400861382","https://openalex.org/W2885727518","https://openalex.org/W4328000755"],"related_works":["https://openalex.org/W2030640333","https://openalex.org/W1872127137","https://openalex.org/W3164573509","https://openalex.org/W2105376545","https://openalex.org/W2944602870","https://openalex.org/W2057998009","https://openalex.org/W2884856132","https://openalex.org/W1995265584","https://openalex.org/W4254839071","https://openalex.org/W4285076939"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"silco":[2],"Biology":[3],"is":[4,8,19],"increasingly":[5],"important":[6],"and":[7],"often":[9],"based":[10],"on":[11],"public":[12],"data.":[13],"While":[14],"the":[15,25,64],"problem":[16,27],"of":[17,28,70,73,99],"contamination":[18],"well":[20],"recognised":[21],"in":[22,63],"microbiology":[23],"labs":[24],"corresponding":[26],"database":[29],"corruption":[30],"has":[31],"received":[32],"less":[33],"attention.":[34],"RESULTS:":[35],"Mapping":[36],"50":[37],"billion":[38],"next":[39],"generation":[40],"DNA":[41],"sequences":[42,86],"from":[43],"The":[44],"Thousand":[45],"Genome":[46],"Project":[47],"against":[48],"published":[49],"genomes":[50],"reveals":[51],"many":[52],"that":[53],"match":[54,87],"one":[55],"or":[56],"more":[57],"Mycoplasma":[58,88],"but":[59,76,89],"are":[60,72,102],"not":[61],"included":[62],"reference":[65],"human":[66,91],"genome":[67],"GRCh37.p5.":[68],"Many":[69],"these":[71],"low":[74],"quality":[75],"NCBI":[77],"BLAST":[78],"searches":[79],"confirm":[80],"some":[81],"high":[82,84],"quality,":[83],"entropy":[85],"no":[90],"sequences.":[92],"CONCLUSIONS:":[93],"It":[94],"appears":[95],"at":[96],"least":[97],"7%":[98],"1000G":[100],"samples":[101],"contaminated.":[103]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":3}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
