{"id":"https://openalex.org/W2148103594","doi":"https://doi.org/10.1186/1756-0381-6-6","title":"Using Bayesian networks to discover relations between genes, environment, and disease","display_name":"Using Bayesian networks to discover relations between genes, environment, and disease","publication_year":2013,"publication_date":"2013-03-21","ids":{"openalex":"https://openalex.org/W2148103594","doi":"https://doi.org/10.1186/1756-0381-6-6","mag":"2148103594","pmid":"https://pubmed.ncbi.nlm.nih.gov/23514120"},"language":"en","primary_location":{"id":"doi:10.1186/1756-0381-6-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-6-6","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-6-6","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-6-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043281010","display_name":"Chengwei Su","orcid":"https://orcid.org/0000-0003-1492-723X"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chengwei Su","raw_affiliation_strings":["Thayer School of Engineering, Dartmouth College, Hanover, NH, USA. mark.borsuk@dartmouth.edu","Thayer School of Engineering, Dartmouth College, Hanover, NH, USA"],"affiliations":[{"raw_affiliation_string":"Thayer School of Engineering, Dartmouth College, Hanover, NH, USA. mark.borsuk@dartmouth.edu","institution_ids":[]},{"raw_affiliation_string":"Thayer School of Engineering, Dartmouth College, Hanover, NH, USA","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009454568","display_name":"Angeline S. Andrew","orcid":"https://orcid.org/0000-0002-3731-5300"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Angeline Andrew","raw_affiliation_strings":["Community and Family Medicine, Section of Biostatistics & Epidemiology, Geisel School of Medicine, Hanover, NH, USA"],"affiliations":[{"raw_affiliation_string":"Community and Family Medicine, Section of Biostatistics & Epidemiology, Geisel School of Medicine, Hanover, NH, USA","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062649421","display_name":"Margaret R. Karagas","orcid":"https://orcid.org/0000-0002-6398-7362"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Margaret R Karagas","raw_affiliation_strings":["Community and Family Medicine, Section of Biostatistics & Epidemiology, Geisel School of Medicine, Hanover, NH, USA"],"affiliations":[{"raw_affiliation_string":"Community and Family Medicine, Section of Biostatistics & Epidemiology, Geisel School of Medicine, Hanover, NH, USA","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036498410","display_name":"Mark E. Borsuk","orcid":"https://orcid.org/0000-0002-5121-1110"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark E Borsuk","raw_affiliation_strings":["Thayer School of Engineering, Dartmouth College, Hanover, NH, USA"],"affiliations":[{"raw_affiliation_string":"Thayer School of Engineering, Dartmouth College, Hanover, NH, USA","institution_ids":["https://openalex.org/I107672454"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5043281010"],"corresponding_institution_ids":["https://openalex.org/I107672454"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":8.9595,"has_fulltext":true,"cited_by_count":106,"citation_normalized_percentile":{"value":0.97630591,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"6","issue":"1","first_page":"6","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9291999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9128999710083008,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7141187787055969},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.6938237547874451},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5924879312515259},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5920328497886658},{"id":"https://openalex.org/keywords/graphical-model","display_name":"Graphical model","score":0.5472663044929504},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5135929584503174},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48750635981559753},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4488056004047394},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.42162322998046875},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.42024219036102295},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4139222204685211},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.358570396900177}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7141187787055969},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.6938237547874451},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5924879312515259},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5920328497886658},{"id":"https://openalex.org/C155846161","wikidata":"https://www.wikidata.org/wiki/Q1143367","display_name":"Graphical model","level":2,"score":0.5472663044929504},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5135929584503174},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48750635981559753},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4488056004047394},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.42162322998046875},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.42024219036102295},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4139222204685211},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.358570396900177},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1756-0381-6-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-6-6","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-6-6","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:23514120","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23514120","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:europepmc.org:2617048","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3614442","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3614442","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3614442","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1756-0381-6-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-6-6","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-6-6","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G2833757457","display_name":null,"funder_award_id":"P20 GM103534","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3329380511","display_name":null,"funder_award_id":"GM103534","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5998877154","display_name":null,"funder_award_id":"8 P20 GM103534","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7965638068","display_name":null,"funder_award_id":"GM103534","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2148103594.pdf","grobid_xml":"https://content.openalex.org/works/W2148103594.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W13176313","https://openalex.org/W26772505","https://openalex.org/W69257054","https://openalex.org/W112199310","https://openalex.org/W619172442","https://openalex.org/W1513861746","https://openalex.org/W1523680690","https://openalex.org/W1526740898","https://openalex.org/W1535430927","https://openalex.org/W1542591759","https://openalex.org/W1566045017","https://openalex.org/W1583923142","https://openalex.org/W1592076897","https://openalex.org/W1709414455","https://openalex.org/W1815331012","https://openalex.org/W1929141233","https://openalex.org/W1966360257","https://openalex.org/W1980175560","https://openalex.org/W1983690667","https://openalex.org/W1985849948","https://openalex.org/W1998641738","https://openalex.org/W2006204029","https://openalex.org/W2008906462","https://openalex.org/W2029965664","https://openalex.org/W2049633694","https://openalex.org/W2053992841","https://openalex.org/W2054883878","https://openalex.org/W2057849368","https://openalex.org/W2059055991","https://openalex.org/W2059949476","https://openalex.org/W2067397873","https://openalex.org/W2072372077","https://openalex.org/W2073307618","https://openalex.org/W2080828514","https://openalex.org/W2083610541","https://openalex.org/W2089365131","https://openalex.org/W2093065590","https://openalex.org/W2093453252","https://openalex.org/W2098038934","https://openalex.org/W2099950120","https://openalex.org/W2102202568","https://openalex.org/W2104057051","https://openalex.org/W2104605543","https://openalex.org/W2105130030","https://openalex.org/W2107128331","https://openalex.org/W2117625122","https://openalex.org/W2125631472","https://openalex.org/W2125779167","https://openalex.org/W2128088446","https://openalex.org/W2129564794","https://openalex.org/W2131878646","https://openalex.org/W2140253369","https://openalex.org/W2143891888","https://openalex.org/W2144043445","https://openalex.org/W2144731007","https://openalex.org/W2146585970","https://openalex.org/W2149310258","https://openalex.org/W2152905639","https://openalex.org/W2154572047","https://openalex.org/W2161511352","https://openalex.org/W2161642932","https://openalex.org/W2165190832","https://openalex.org/W2167325069","https://openalex.org/W2170112109","https://openalex.org/W2171620180","https://openalex.org/W2337547898","https://openalex.org/W2582743722","https://openalex.org/W2595840341","https://openalex.org/W2602256192","https://openalex.org/W2611370172","https://openalex.org/W2625452735","https://openalex.org/W2911854988","https://openalex.org/W2963773285","https://openalex.org/W3133236490","https://openalex.org/W4256617328","https://openalex.org/W4285719527","https://openalex.org/W4299515571","https://openalex.org/W4300995828"],"related_works":["https://openalex.org/W3183113072","https://openalex.org/W2126934800","https://openalex.org/W2187019487","https://openalex.org/W4286900141","https://openalex.org/W1734881440","https://openalex.org/W1715419791","https://openalex.org/W643788828","https://openalex.org/W2158940596","https://openalex.org/W4200510307","https://openalex.org/W3125134981"],"abstract_inverted_index":{"We":[0,39,58],"review":[1],"the":[2,42,51,67,82,134,149,191,210,219,226,231],"applicability":[3,48],"of":[4,56,63,69,76,84,106,138,143,148,194,198,213,222,230,233],"Bayesian":[5,43],"networks":[6],"(BNs)":[7],"for":[8,35,65,160,190],"discovering":[9],"relations":[10],"between":[11],"genes,":[12],"environment,":[13],"and":[14,25,32,46,53,87,136,181,196,205,216,225,228,239],"disease.":[15,57],"By":[16],"translating":[17],"probabilistic":[18],"dependencies":[19],"among":[20],"variables":[21,215],"into":[22],"graphical":[23],"models":[24],"vice":[26],"versa,":[27],"BNs":[28,185],"provide":[29],"a":[30,61,70,103,166],"comprehensible":[31],"modular":[33],"framework":[34],"representing":[36],"complex":[37,176],"systems.":[38],"first":[40],"describe":[41,60],"network":[44,71,161],"approach":[45,94],"its":[47],"to":[49,79,100,124,156,174,236],"understanding":[50],"genetic":[52,192],"environmental":[54],"basis":[55],"then":[59,96],"variety":[62],"algorithms":[64],"learning":[66],"structure":[68],"from":[72,102,165],"observational":[73],"data.":[74],"Because":[75],"their":[77],"relevance":[78],"real-world":[80],"applications,":[81],"topics":[83],"missing":[85],"data":[86,101,126,240],"causal":[88,168],"interpretation":[89,169],"are":[90,186],"emphasized.":[91],"The":[92],"BN":[93],"is":[95],"exemplified":[97],"through":[98,146],"application":[99,147],"population-based":[104],"study":[105],"bladder":[107],"cancer":[108],"in":[109,133],"New":[110],"Hampshire,":[111],"USA.":[112],"For":[113],"didactical":[114],"purposes,":[115],"we":[116,128],"intentionally":[117],"keep":[118],"this":[119],"example":[120],"simple.":[121],"When":[122],"applied":[123],"complete":[125],"records,":[127],"find":[129],"only":[130],"minor":[131],"differences":[132],"performance":[135],"results":[137],"different":[139],"algorithms.":[140],"Subsequent":[141],"incorporation":[142,221],"partial":[144],"records":[145],"EM":[150],"algorithm":[151],"gives":[152],"us":[153],"greater":[154],"power":[155],"detect":[157],"relations.":[158],"Allowing":[159],"structures":[162],"that":[163],"depart":[164],"strict":[167],"also":[170],"enhances":[171],"our":[172],"ability":[173],"discover":[175],"associations":[177],"including":[178],"gene-gene":[179],"(epistasis)":[180],"gene-environment":[182],"interactions.":[183],"While":[184],"already":[187],"powerful":[188],"tools":[189],"dissection":[193],"disease":[195],"generation":[197],"prognostic":[199],"models,":[200],"there":[201],"remain":[202],"some":[203],"conceptual":[204],"computational":[206],"challenges.":[207],"These":[208],"include":[209],"proper":[211],"handling":[212],"continuous":[214],"unmeasured":[217],"factors,":[218],"explicit":[220],"prior":[223],"knowledge,":[224],"evaluation":[227],"communication":[229],"robustness":[232],"substantive":[234],"conclusions":[235],"alternative":[237],"assumptions":[238],"manifestations.":[241]},"counts_by_year":[{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":3}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
