{"id":"https://openalex.org/W2104666215","doi":"https://doi.org/10.1186/1756-0381-6-21","title":"Graph representation of high-dimensional alpha-helical membrane protein data","display_name":"Graph representation of high-dimensional alpha-helical membrane protein data","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W2104666215","doi":"https://doi.org/10.1186/1756-0381-6-21","mag":"2104666215","pmid":"https://pubmed.ncbi.nlm.nih.gov/24294896"},"language":"en","primary_location":{"id":"doi:10.1186/1756-0381-6-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-6-21","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/1756-0381-6-21","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/1756-0381-6-21","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003585222","display_name":"Steffen Grunert","orcid":"https://orcid.org/0000-0002-2068-6420"},"institutions":[{"id":"https://openalex.org/I116397343","display_name":"Hochschule Mittweida","ror":"https://ror.org/024ga3r86","country_code":"DE","type":"education","lineage":["https://openalex.org/I116397343"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Steffen Grunert","raw_affiliation_strings":["Department of Mathematics, Sciences, Computer Science, University of Applied Sciences Mittweida, Technikumplatz 17, Mittweida 09648, Germany","Department of Mathematics, Sciences, Computer Science, University of Applied Sciences Mittweida, Mittweida, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Sciences, Computer Science, University of Applied Sciences Mittweida, Technikumplatz 17, Mittweida 09648, Germany","institution_ids":["https://openalex.org/I116397343"]},{"raw_affiliation_string":"Department of Mathematics, Sciences, Computer Science, University of Applied Sciences Mittweida, Mittweida, Germany","institution_ids":["https://openalex.org/I116397343"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023295736","display_name":"Dirk Labudde","orcid":"https://orcid.org/0000-0003-0466-0017"},"institutions":[{"id":"https://openalex.org/I116397343","display_name":"Hochschule Mittweida","ror":"https://ror.org/024ga3r86","country_code":"DE","type":"education","lineage":["https://openalex.org/I116397343"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dirk Labudde","raw_affiliation_strings":["Department of Mathematics, Sciences, Computer Science, University of Applied Sciences Mittweida, Technikumplatz 17, Mittweida 09648, Germany","Department of Mathematics, Sciences, Computer Science, University of Applied Sciences Mittweida, Mittweida, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Sciences, Computer Science, University of Applied Sciences Mittweida, Technikumplatz 17, Mittweida 09648, Germany","institution_ids":["https://openalex.org/I116397343"]},{"raw_affiliation_string":"Department of Mathematics, Sciences, Computer Science, University of Applied Sciences Mittweida, Mittweida, Germany","institution_ids":["https://openalex.org/I116397343"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5003585222"],"corresponding_institution_ids":["https://openalex.org/I116397343"],"apc_list":{"value":2490,"currency":"USD","value_usd":2490},"apc_paid":{"value":2490,"currency":"USD","value_usd":2490},"fwci":0.1376,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.54764453,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"6","issue":"1","first_page":"21","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7473000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7473000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.13169999420642853,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.02850000001490116,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6440624594688416},{"id":"https://openalex.org/keywords/alpha","display_name":"Alpha (finance)","score":0.5802052617073059},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5725398063659668},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5673633813858032},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.35235410928726196},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33573275804519653},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20093944668769836},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.14288455247879028}],"concepts":[{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6440624594688416},{"id":"https://openalex.org/C64943373","wikidata":"https://www.wikidata.org/wiki/Q2651003","display_name":"Alpha (finance)","level":4,"score":0.5802052617073059},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5725398063659668},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5673633813858032},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35235410928726196},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33573275804519653},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20093944668769836},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.14288455247879028},{"id":"https://openalex.org/C171606756","wikidata":"https://www.wikidata.org/wiki/Q506132","display_name":"Psychometrics","level":2,"score":0.0},{"id":"https://openalex.org/C49453240","wikidata":"https://www.wikidata.org/wiki/Q1592163","display_name":"Construct validity","level":3,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1756-0381-6-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-6-21","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/1756-0381-6-21","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:24294896","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24294896","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3879021","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3879021","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1756-0381-6-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-6-21","pdf_url":"https://biodatamining.biomedcentral.com/track/pdf/10.1186/1756-0381-6-21","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320328735","display_name":"Freistaat Sachsen","ror":null},{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104666215.pdf","grobid_xml":"https://content.openalex.org/works/W2104666215.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1786753252","https://openalex.org/W1969787762","https://openalex.org/W1970613671","https://openalex.org/W1991655565","https://openalex.org/W1994373739","https://openalex.org/W2022761661","https://openalex.org/W2033323125","https://openalex.org/W2055043387","https://openalex.org/W2055177461","https://openalex.org/W2066694823","https://openalex.org/W2071413593","https://openalex.org/W2096358531","https://openalex.org/W2105221327","https://openalex.org/W2107158607","https://openalex.org/W2114083522","https://openalex.org/W2125079066","https://openalex.org/W2127648442","https://openalex.org/W2141885858","https://openalex.org/W2156125289","https://openalex.org/W2157535945","https://openalex.org/W2160717157","https://openalex.org/W2162216089","https://openalex.org/W2163924712","https://openalex.org/W2171885962","https://openalex.org/W3106798016","https://openalex.org/W4241884576","https://openalex.org/W4250528109","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W2417836279","https://openalex.org/W2472139559","https://openalex.org/W2062195135","https://openalex.org/W2500005748","https://openalex.org/W2334563890","https://openalex.org/W2416347974","https://openalex.org/W2315353352","https://openalex.org/W2522347727","https://openalex.org/W2795072980","https://openalex.org/W2463056808"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,24],"genomics":[2],"and":[3,119,207,253,261,266,278],"proteomics,":[4],"membrane":[5,28,52,56,81,146,170,240,270],"protein":[6,53,98,112,160,295],"analysis":[7,137,238],"have":[8,71,129],"shown":[9],"that":[10,151,191],"such":[11],"analyses":[12],"are":[13,162,229,274],"very":[14],"important":[15,60,105,196,222],"to":[16,74,114,121,188,231,246,276,292,299],"support":[17,46,258],"the":[18,47,50,55,80,108,145,165,189,202,254,259],"understanding":[19,48,260],"of":[20,27,33,49,79,92,110,138,144,239,263,269,281],"complex":[21],"biological":[22,117,248,300],"processes.":[23],"Genome-wide":[25],"investigations":[26],"proteins":[29,241],"a":[30,116,211,247,289],"large":[31],"number":[32],"short,":[34],"distinct":[35],"sequence":[36],"motifs":[37,42,140,153,174,193,206,268],"has":[38],"been":[39,72],"revealed.":[40],"Such":[41],"found":[43],"so":[44,184],"far":[45],"folded":[51],"in":[54,107,141,157,168,180,198,214,297],"environment.":[57,82,147],"They":[58],"provide":[59,122],"information":[61,77,85,124],"about":[62],"functional":[63,225,267],"or":[64],"stabilizing":[65],"properties.":[66],"Recently":[67],"several":[68],"integrative":[69],"approaches":[70,87],"proposed":[73],"extract":[75],"meaningful":[76],"out":[78],"However,":[83],"many":[84],"based":[86],"deliver":[88],"results":[89,149,235,252,273,280],"having":[90],"deficits":[91],"visualisation":[93,257],"outputs.":[94],"Outgoing":[95],"from":[96,135,236],"high-throughput":[97,237],"data":[99,296],"analysis,":[100],"these":[101,192],"outputs":[102],"play":[103],"an":[104],"role":[106],"evaluation":[109],"high-dimensional":[111,294],"data,":[113],"establish":[115],"relationship":[118],"ultimately":[120],"useful":[123,275],"for":[125,164,223],"research.":[126],"RESULTS:":[127],"We":[128],"evaluated":[130],"different":[131],"resulting":[132],"graphs":[133],"generated":[134],"statistical":[136],"consecutive":[139,205],"helical":[142,199],"structures":[143,200],"Our":[148,251,272],"show":[150,210,288],"representative":[152],"with":[154,178,244],"high":[155,212],"occurrence":[156,213],"all":[158],"investigated":[159],"families":[161,216],"responsible":[163],"general":[166],"importance":[167],"alpha-helical":[169],"structure":[171,264],"formation.":[172],"Further,":[173],"which":[175,209],"often":[176],"occur":[177],"others":[179],"their":[181],"function":[182],"as":[183,195,221],"called":[185],"\"hubs\"":[186],"lead":[187],"assumption,":[190],"constitute":[194],"components":[197],"within":[201],"membrane.":[203],"Otherwise,":[204],"hubs":[208],"certain":[215],"only":[217],"can":[218],"be":[219],"classified":[220],"family-specific":[224],"characteristics.":[226],"Summarized,":[227],"we":[228,287],"able":[230],"bridge":[232],"our":[233],"graphical":[234,256],"over":[242],"networking":[243],"databases":[245],"context.":[249],"CONCLUSIONS:":[250],"corresponding":[255],"interpretation":[262],"forming":[265],"proteins.":[271],"interpret":[277],"refine":[279],"common":[282],"developed":[283],"approaches.":[284],"At":[285],"last":[286],"simple":[290],"way":[291],"visualise":[293],"context":[298],"relevant":[301],"information.":[302]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
