{"id":"https://openalex.org/W2124235814","doi":"https://doi.org/10.1186/1756-0381-4-3","title":"Biclustering of Gene Expression Data by Correlation-Based Scatter Search","display_name":"Biclustering of Gene Expression Data by Correlation-Based Scatter Search","publication_year":2011,"publication_date":"2011-01-24","ids":{"openalex":"https://openalex.org/W2124235814","doi":"https://doi.org/10.1186/1756-0381-4-3","mag":"2124235814","pmid":"https://pubmed.ncbi.nlm.nih.gov/21261986"},"language":"en","primary_location":{"id":"doi:10.1186/1756-0381-4-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-4-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-4-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-4-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042668863","display_name":"Juan A. Nepomuceno","orcid":"https://orcid.org/0000-0003-2851-951X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Juan A Nepomuceno","raw_affiliation_strings":["Dpt, Lenguajes y Sistemas Inform\u00e1ticos, ETSII, University of Seville, Avd, Reina Mercedes s/n, 41012, Seville, Spain. janepo@us.es","Dpt, Lenguajes y Sistemas Inform\u00e1ticos, ETSII, University of Seville, Avd, Reina Mercedes s/n, 41012, Seville, Spain"],"affiliations":[{"raw_affiliation_string":"Dpt, Lenguajes y Sistemas Inform\u00e1ticos, ETSII, University of Seville, Avd, Reina Mercedes s/n, 41012, Seville, Spain. janepo@us.es","institution_ids":[]},{"raw_affiliation_string":"Dpt, Lenguajes y Sistemas Inform\u00e1ticos, ETSII, University of Seville, Avd, Reina Mercedes s/n, 41012, Seville, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007453127","display_name":"Alicia Troncoso","orcid":"https://orcid.org/0000-0002-9801-7999"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alicia Troncoso","raw_affiliation_strings":["Department of Computer Science, School of Engineering, Pablo de Olavide University, Ctra. Utrera km. 1, 41013, Seville, Spain","Department of Computer Science, School of Engineering, Pablo de Olavide University, Seville, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, School of Engineering, Pablo de Olavide University, Ctra. Utrera km. 1, 41013, Seville, Spain","institution_ids":["https://openalex.org/I95013407"]},{"raw_affiliation_string":"Department of Computer Science, School of Engineering, Pablo de Olavide University, Seville, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049817649","display_name":"Jes\u00fas S. Aguilar\u2013Ruiz","orcid":"https://orcid.org/0000-0002-2666-293X"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jes\u00fas S Aguilar-Ruiz","raw_affiliation_strings":["Department of Computer Science, School of Engineering, Pablo de Olavide University, Ctra. Utrera km. 1, 41013, Seville, Spain","Department of Computer Science, School of Engineering, Pablo de Olavide University, Seville, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, School of Engineering, Pablo de Olavide University, Ctra. Utrera km. 1, 41013, Seville, Spain","institution_ids":["https://openalex.org/I95013407"]},{"raw_affiliation_string":"Department of Computer Science, School of Engineering, Pablo de Olavide University, Seville, Spain","institution_ids":["https://openalex.org/I95013407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042668863"],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.2617,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.88305187,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"4","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biclustering","display_name":"Biclustering","score":0.8448100090026855},{"id":"https://openalex.org/keywords/fitness-function","display_name":"Fitness function","score":0.5965254306793213},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5647950172424316},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.497407466173172},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4410950243473053},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.43809816241264343},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4199594557285309},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33689582347869873},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30937695503234863},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.29395583271980286},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.2776881456375122},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2347618043422699},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2168237268924713},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21405410766601562},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18151822686195374}],"concepts":[{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.8448100090026855},{"id":"https://openalex.org/C176066374","wikidata":"https://www.wikidata.org/wiki/Q629118","display_name":"Fitness function","level":3,"score":0.5965254306793213},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5647950172424316},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.497407466173172},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4410950243473053},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.43809816241264343},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4199594557285309},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33689582347869873},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30937695503234863},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.29395583271980286},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.2776881456375122},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2347618043422699},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2168237268924713},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21405410766601562},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18151822686195374},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1756-0381-4-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-4-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-4-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:21261986","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21261986","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:dnet:idus________::62769a5637d9ab1af2995f28c3c6b573","is_oa":false,"landing_page_url":"https://idus.us.es/handle/11441/16782","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:e5b261464bdf4dac870e99f1fecaeb75","is_oa":true,"landing_page_url":"https://doaj.org/article/e5b261464bdf4dac870e99f1fecaeb75","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 4, Iss 1, p 3 (2011)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3037342","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3037342","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1756-0381-4-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-4-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-4-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.4300000071525574,"display_name":"Responsible consumption and production"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320326754","display_name":"Junta de Andaluc\u00eda","ror":"https://ror.org/01jem9c82"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124235814.pdf","grobid_xml":"https://content.openalex.org/works/W2124235814.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W601739477","https://openalex.org/W1483118642","https://openalex.org/W1486996222","https://openalex.org/W1493217831","https://openalex.org/W1551167422","https://openalex.org/W1555490457","https://openalex.org/W1561864708","https://openalex.org/W1895263298","https://openalex.org/W1964677551","https://openalex.org/W1967053372","https://openalex.org/W1981114175","https://openalex.org/W2000264668","https://openalex.org/W2036328877","https://openalex.org/W2037400115","https://openalex.org/W2054966761","https://openalex.org/W2055037769","https://openalex.org/W2055550250","https://openalex.org/W2058849889","https://openalex.org/W2064787891","https://openalex.org/W2080278541","https://openalex.org/W2090257125","https://openalex.org/W2096532003","https://openalex.org/W2096800681","https://openalex.org/W2098740506","https://openalex.org/W2105883975","https://openalex.org/W2108480506","https://openalex.org/W2119282901","https://openalex.org/W2121044164","https://openalex.org/W2121463966","https://openalex.org/W2125138557","https://openalex.org/W2125164620","https://openalex.org/W2130158951","https://openalex.org/W2136107412","https://openalex.org/W2137167578","https://openalex.org/W2137596615","https://openalex.org/W2137683543","https://openalex.org/W2142460132","https://openalex.org/W2143274936","https://openalex.org/W2144544802","https://openalex.org/W2144792853","https://openalex.org/W2147246240","https://openalex.org/W2147875899","https://openalex.org/W2150641886","https://openalex.org/W2151725980","https://openalex.org/W2152987446","https://openalex.org/W2169541951","https://openalex.org/W2335826682","https://openalex.org/W2434205482","https://openalex.org/W2504829889","https://openalex.org/W2598851863","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W1974340769","https://openalex.org/W2900595096","https://openalex.org/W4289277241","https://openalex.org/W2979322793","https://openalex.org/W2765801824","https://openalex.org/W2188068678","https://openalex.org/W2157302779","https://openalex.org/W4236723217","https://openalex.org/W4226363062","https://openalex.org/W2592285132"],"abstract_inverted_index":{"The":[0],"proposed":[1,42],"algorithm":[2],"has":[3],"been":[4],"tested":[5],"with":[6,31],"three":[7],"real":[8],"data":[9],"sets":[10],"such":[11],"as":[12],"Yeast":[13,22],"Cell":[14],"Cycle":[15],"dataset,":[16,24],"human":[17],"B-cells":[18],"lymphoma":[19],"dataset":[20],"and":[21,33,44,57],"Stress":[23],"finding":[25],"a":[26],"remarkable":[27],"number":[28],"of":[29,40,51],"biclusters":[30],"shifting":[32],"scaling":[34],"patterns.":[35],"In":[36],"addition,":[37],"the":[38,41,61],"performance":[39],"method":[43],"fitness":[45],"function":[46],"are":[47],"compared":[48],"to":[49],"that":[50],"CC,":[52],"OPSM,":[53],"ISA,":[54],"BiMax,":[55],"xMotifs":[56],"Samba":[58],"using":[59],"Gene":[60],"Ontology":[62],"Database.":[63]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
