{"id":"https://openalex.org/W2106474670","doi":"https://doi.org/10.1186/1756-0381-4-10","title":"Using graph theory to analyze biological networks","display_name":"Using graph theory to analyze biological networks","publication_year":2011,"publication_date":"2011-04-28","ids":{"openalex":"https://openalex.org/W2106474670","doi":"https://doi.org/10.1186/1756-0381-4-10","mag":"2106474670","pmid":"https://pubmed.ncbi.nlm.nih.gov/21527005"},"language":"en","primary_location":{"id":"doi:10.1186/1756-0381-4-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-4-10","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-4-10","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-4-10","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088991393","display_name":"Georgios A. Pavlopoulos","orcid":"https://orcid.org/0000-0002-4577-8276"},"institutions":[{"id":"https://openalex.org/I179161674","display_name":"Technological Educational Institute of Central Greece","ror":"https://ror.org/03ed9w591","country_code":"GR","type":"education","lineage":["https://openalex.org/I179161674"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","GR"],"is_corresponding":true,"raw_author_name":"Georgios A Pavlopoulos","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece. pavlopou@embl.de","Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, Greece","Faculty of Engineering - ESAT/SCD, Katholieke Universiteit Leuven, Leuven-Heverlee, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece. pavlopou@embl.de","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, Greece","institution_ids":["https://openalex.org/I179161674"]},{"raw_affiliation_string":"Faculty of Engineering - ESAT/SCD, Katholieke Universiteit Leuven, Leuven-Heverlee, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103028167","display_name":"Maria Secrier","orcid":"https://orcid.org/0000-0003-2758-1741"},"institutions":[{"id":"https://openalex.org/I179161674","display_name":"Technological Educational Institute of Central Greece","ror":"https://ror.org/03ed9w591","country_code":"GR","type":"education","lineage":["https://openalex.org/I179161674"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Maria Secrier","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","Structural and Computational Biology Unit, EMBL, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","institution_ids":["https://openalex.org/I179161674"]},{"raw_affiliation_string":"Structural and Computational Biology Unit, EMBL, Heidelberg, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021432827","display_name":"Charalampos Moschopoulos","orcid":null},"institutions":[{"id":"https://openalex.org/I174878644","display_name":"University of Patras","ror":"https://ror.org/017wvtq80","country_code":"GR","type":"education","lineage":["https://openalex.org/I174878644"]},{"id":"https://openalex.org/I179161674","display_name":"Technological Educational Institute of Central Greece","ror":"https://ror.org/03ed9w591","country_code":"GR","type":"education","lineage":["https://openalex.org/I179161674"]},{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Charalampos N Moschopoulos","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","Department of Computer Engineering & Informatics, University of Patras, Rio, Patras, Greece","Bioinformatics & Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","institution_ids":["https://openalex.org/I179161674"]},{"raw_affiliation_string":"Department of Computer Engineering & Informatics, University of Patras, Rio, Patras, Greece","institution_ids":["https://openalex.org/I174878644"]},{"raw_affiliation_string":"Bioinformatics & Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece","institution_ids":["https://openalex.org/I206127235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039053742","display_name":"Theodoros Soldatos","orcid":"https://orcid.org/0000-0001-6051-6605"},"institutions":[{"id":"https://openalex.org/I179161674","display_name":"Technological Educational Institute of Central Greece","ror":"https://ror.org/03ed9w591","country_code":"GR","type":"education","lineage":["https://openalex.org/I179161674"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Theodoros G Soldatos","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","Life Biosystems GmbH, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","institution_ids":["https://openalex.org/I179161674"]},{"raw_affiliation_string":"Life Biosystems GmbH, Heidelberg, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052164166","display_name":"\u03a3\u03bf\u03c6\u03af\u03b1 \u039a\u03bf\u03c3\u03c3\u03af\u03b4\u03b1","orcid":"https://orcid.org/0000-0002-8841-2864"},"institutions":[{"id":"https://openalex.org/I206127235","display_name":"Academy of Athens","ror":"https://ror.org/00qsdn986","country_code":"GR","type":"education","lineage":["https://openalex.org/I206127235"]},{"id":"https://openalex.org/I179161674","display_name":"Technological Educational Institute of Central Greece","ror":"https://ror.org/03ed9w591","country_code":"GR","type":"education","lineage":["https://openalex.org/I179161674"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Sophia Kossida","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","Bioinformatics & Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","institution_ids":["https://openalex.org/I179161674"]},{"raw_affiliation_string":"Bioinformatics & Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Athens, Greece","institution_ids":["https://openalex.org/I206127235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053646618","display_name":"Jan Aerts","orcid":"https://orcid.org/0000-0002-6416-2717"},"institutions":[{"id":"https://openalex.org/I179161674","display_name":"Technological Educational Institute of Central Greece","ror":"https://ror.org/03ed9w591","country_code":"GR","type":"education","lineage":["https://openalex.org/I179161674"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","GR"],"is_corresponding":false,"raw_author_name":"Jan Aerts","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","Faculty of Engineering - ESAT/SCD, Katholieke Universiteit Leuven, Leuven-Heverlee, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","institution_ids":["https://openalex.org/I179161674"]},{"raw_affiliation_string":"Faculty of Engineering - ESAT/SCD, Katholieke Universiteit Leuven, Leuven-Heverlee, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079833473","display_name":"Reinhard Schneider","orcid":"https://orcid.org/0000-0002-8278-1618"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]},{"id":"https://openalex.org/I179161674","display_name":"Technological Educational Institute of Central Greece","ror":"https://ror.org/03ed9w591","country_code":"GR","type":"education","lineage":["https://openalex.org/I179161674"]}],"countries":["GR","LU"],"is_corresponding":false,"raw_author_name":"Reinhard Schneider","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg","Structural and Computational Biology Unit, EMBL, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","institution_ids":["https://openalex.org/I179161674"]},{"raw_affiliation_string":"Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"Structural and Computational Biology Unit, EMBL, Heidelberg, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035334094","display_name":"Pantelis G. Bagos","orcid":"https://orcid.org/0000-0003-4935-2325"},"institutions":[{"id":"https://openalex.org/I179161674","display_name":"Technological Educational Institute of Central Greece","ror":"https://ror.org/03ed9w591","country_code":"GR","type":"education","lineage":["https://openalex.org/I179161674"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Pantelis G Bagos","raw_affiliation_strings":["Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","Department of Computer Science and Biomedical Informatics; University of Central Greece; Lamia; Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece","institution_ids":["https://openalex.org/I179161674"]},{"raw_affiliation_string":"Department of Computer Science and Biomedical Informatics; University of Central Greece; Lamia; Greece","institution_ids":["https://openalex.org/I179161674"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5088991393"],"corresponding_institution_ids":["https://openalex.org/I179161674","https://openalex.org/I99464096"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":8.9122,"has_fulltext":true,"cited_by_count":805,"citation_normalized_percentile":{"value":0.98643236,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"4","issue":"1","first_page":"10","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9672999978065491,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7846616506576538},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6528714895248413},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5678671002388},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5604220628738403},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5032419562339783},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4701398015022278},{"id":"https://openalex.org/keywords/graph-theory","display_name":"Graph theory","score":0.46217507123947144},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.45180028676986694},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.4370706379413605},{"id":"https://openalex.org/keywords/network-theory","display_name":"Network theory","score":0.4184392988681793},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3318093419075012},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14386409521102905},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13532227277755737},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10014691948890686},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07869064807891846}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7846616506576538},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6528714895248413},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5678671002388},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5604220628738403},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5032419562339783},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4701398015022278},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.46217507123947144},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.45180028676986694},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.4370706379413605},{"id":"https://openalex.org/C11804174","wikidata":"https://www.wikidata.org/wiki/Q1192971","display_name":"Network theory","level":2,"score":0.4184392988681793},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3318093419075012},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14386409521102905},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13532227277755737},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10014691948890686},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07869064807891846},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1186/1756-0381-4-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-4-10","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-4-10","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:21527005","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21527005","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:HAL:hal-04112415v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04112415","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, 2011, 4 (1), pp.10. &#x27E8;10.1186/1756-0381-4-10&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:c1d9c9ee6bf543fb9a74a337169733cc","is_oa":true,"landing_page_url":"https://doaj.org/article/c1d9c9ee6bf543fb9a74a337169733cc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 4, Iss 1, p 10 (2011)","raw_type":"article"},{"id":"pmh:oai:documentserver.uhasselt.be:1942/34307","is_oa":false,"landing_page_url":"http://hdl.handle.net/1942/34307","pdf_url":null,"source":{"id":"https://openalex.org/S4306401926","display_name":"Document Server@UHasselt (UHasselt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I878454856","host_organization_name":"Hasselt University","host_organization_lineage":["https://openalex.org/I878454856"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/review"},{"id":"pmh:oai:ir.lib.uth.gr:11615/32113","is_oa":false,"landing_page_url":"http://hdl.handle.net/11615/32113","pdf_url":null,"source":{"id":"https://openalex.org/S4306400243","display_name":"University of Thessaly Institutional Repository (University of Thessaly)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145722265","host_organization_name":"University of Thessaly","host_organization_lineage":["https://openalex.org/I145722265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"&lt;Go to ISI&gt;://WOS:000208761200010","raw_type":"journalArticle"},{"id":"pmh:oai:orbilu.uni.lu:10993/17054","is_oa":true,"landing_page_url":"http://orbilu.uni.lu/handle/10993/17054","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, 4(10), 1-27. BioMed Central Ltd (2011).","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3101653","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3101653","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1756-0381-4-10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-4-10","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-4-10","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106474670.pdf","grobid_xml":"https://content.openalex.org/works/W2106474670.grobid-xml"},"referenced_works_count":180,"referenced_works":["https://openalex.org/W45534775","https://openalex.org/W69724053","https://openalex.org/W108107911","https://openalex.org/W156213059","https://openalex.org/W249159571","https://openalex.org/W370143576","https://openalex.org/W1517272733","https://openalex.org/W1519734172","https://openalex.org/W1525985997","https://openalex.org/W1556218219","https://openalex.org/W1556472699","https://openalex.org/W1562433595","https://openalex.org/W1628492644","https://openalex.org/W1758395617","https://openalex.org/W1783384641","https://openalex.org/W1808967201","https://openalex.org/W1880273677","https://openalex.org/W1966841828","https://openalex.org/W1968877074","https://openalex.org/W1971425971","https://openalex.org/W1971471239","https://openalex.org/W1972986697","https://openalex.org/W1982428412","https://openalex.org/W1987299841","https://openalex.org/W1987363726","https://openalex.org/W1988047583","https://openalex.org/W1988393300","https://openalex.org/W1988496202","https://openalex.org/W1989921625","https://openalex.org/W1990170789","https://openalex.org/W1992419399","https://openalex.org/W1994656497","https://openalex.org/W1998871699","https://openalex.org/W2000805106","https://openalex.org/W2003832205","https://openalex.org/W2006933206","https://openalex.org/W2007287574","https://openalex.org/W2007572995","https://openalex.org/W2008620264","https://openalex.org/W2010033479","https://openalex.org/W2011426324","https://openalex.org/W2012223636","https://openalex.org/W2013457323","https://openalex.org/W2014978570","https://openalex.org/W2015560283","https://openalex.org/W2018045523","https://openalex.org/W2022237013","https://openalex.org/W2030006812","https://openalex.org/W2031028006","https://openalex.org/W2033193852","https://openalex.org/W2034784092","https://openalex.org/W2037614307","https://openalex.org/W2039378089","https://openalex.org/W2040941311","https://openalex.org/W2040956707","https://openalex.org/W2042880070","https://openalex.org/W2047600440","https://openalex.org/W2048239613","https://openalex.org/W2050721857","https://openalex.org/W2050978103","https://openalex.org/W2057993196","https://openalex.org/W2058673890","https://openalex.org/W2062014401","https://openalex.org/W2062533676","https://openalex.org/W2062937620","https://openalex.org/W2063475537","https://openalex.org/W2065304353","https://openalex.org/W2066718232","https://openalex.org/W2068308602","https://openalex.org/W2069898971","https://openalex.org/W2071767741","https://openalex.org/W2074443723","https://openalex.org/W2082340690","https://openalex.org/W2082621456","https://openalex.org/W2084619201","https://openalex.org/W2084620487","https://openalex.org/W2084916894","https://openalex.org/W2089046374","https://openalex.org/W2092348181","https://openalex.org/W2096975829","https://openalex.org/W2097036913","https://openalex.org/W2097403532","https://openalex.org/W2097698606","https://openalex.org/W2097706568","https://openalex.org/W2099039198","https://openalex.org/W2099468911","https://openalex.org/W2099551325","https://openalex.org/W2104245599","https://openalex.org/W2104315543","https://openalex.org/W2108859156","https://openalex.org/W2109278577","https://openalex.org/W2109745408","https://openalex.org/W2110042475","https://openalex.org/W2110596109","https://openalex.org/W2110678397","https://openalex.org/W2110699703","https://openalex.org/W2110734043","https://openalex.org/W2111627817","https://openalex.org/W2111917647","https://openalex.org/W2112090702","https://openalex.org/W2112809329","https://openalex.org/W2113019448","https://openalex.org/W2113613985","https://openalex.org/W2113654464","https://openalex.org/W2114463320","https://openalex.org/W2115398984","https://openalex.org/W2115851903","https://openalex.org/W2116007667","https://openalex.org/W2116117181","https://openalex.org/W2118572979","https://openalex.org/W2119114096","https://openalex.org/W2120195503","https://openalex.org/W2121564430","https://openalex.org/W2122407999","https://openalex.org/W2122863289","https://openalex.org/W2123280311","https://openalex.org/W2123980993","https://openalex.org/W2124166542","https://openalex.org/W2124354935","https://openalex.org/W2125121305","https://openalex.org/W2125748785","https://openalex.org/W2126175129","https://openalex.org/W2126602684","https://openalex.org/W2127218421","https://openalex.org/W2129226383","https://openalex.org/W2130136434","https://openalex.org/W2130790725","https://openalex.org/W2131104305","https://openalex.org/W2133667940","https://openalex.org/W2135021437","https://openalex.org/W2137043679","https://openalex.org/W2138003801","https://openalex.org/W2142170851","https://openalex.org/W2142465702","https://openalex.org/W2144337387","https://openalex.org/W2144885342","https://openalex.org/W2146162554","https://openalex.org/W2146396346","https://openalex.org/W2146856779","https://openalex.org/W2147638953","https://openalex.org/W2149676146","https://openalex.org/W2149887408","https://openalex.org/W2150908245","https://openalex.org/W2151385152","https://openalex.org/W2152285853","https://openalex.org/W2152580193","https://openalex.org/W2153490111","https://openalex.org/W2153624566","https://openalex.org/W2154687603","https://openalex.org/W2155320925","https://openalex.org/W2155331065","https://openalex.org/W2156425900","https://openalex.org/W2156434383","https://openalex.org/W2159460045","https://openalex.org/W2159675211","https://openalex.org/W2160697532","https://openalex.org/W2161604082","https://openalex.org/W2163485494","https://openalex.org/W2163841023","https://openalex.org/W2164412882","https://openalex.org/W2165232124","https://openalex.org/W2166884712","https://openalex.org/W2166898290","https://openalex.org/W2167350014","https://openalex.org/W2167869241","https://openalex.org/W2169528473","https://openalex.org/W2171437346","https://openalex.org/W2171910868","https://openalex.org/W2325972454","https://openalex.org/W2329686304","https://openalex.org/W2752885492","https://openalex.org/W2799061466","https://openalex.org/W3022858172","https://openalex.org/W3100903510","https://openalex.org/W3101421424","https://openalex.org/W3103786587","https://openalex.org/W3145128584","https://openalex.org/W4298997816","https://openalex.org/W4300439579","https://openalex.org/W6806421124"],"related_works":["https://openalex.org/W2070704205","https://openalex.org/W3134928396","https://openalex.org/W2135602072","https://openalex.org/W2292743949","https://openalex.org/W2372323608","https://openalex.org/W2375639001","https://openalex.org/W1500081329","https://openalex.org/W1525985997","https://openalex.org/W2113462804","https://openalex.org/W4381185673"],"abstract_inverted_index":{"Understanding":[0],"complex":[1],"systems":[2,10],"often":[3],"requires":[4],"a":[5,9,17,26,49,107],"bottom-up":[6],"analysis":[7],"towards":[8],"biology":[11],"approach.":[12],"The":[13,45],"need":[14],"to":[15,100,119],"investigate":[16],"system,":[18],"not":[19],"only":[20],"as":[21,25,57,64],"individual":[22],"components":[23,47],"but":[24],"whole,":[27],"emerges.":[28],"This":[29,109],"can":[30,97],"be":[31,98],"done":[32],"by":[33],"examining":[34],"the":[35,86,122,126],"elementary":[36],"constituents":[37],"individually":[38],"and":[39,51,59,83,90,104],"then":[40],"how":[41],"these":[42],"are":[43,54,61,70],"connected.":[44],"myriad":[46],"of":[48,68,74,106,125],"system":[50],"their":[52],"interactions":[53],"best":[55],"characterized":[56],"networks":[58],"they":[60,96],"mainly":[62],"represented":[63],"graphs":[65],"where":[66],"thousands":[67,73],"nodes":[69],"connected":[71],"with":[72,113],"vertices.":[75],"In":[76],"this":[77],"article":[78],"we":[79,91],"demonstrate":[80],"approaches,":[81],"models":[82],"methods":[84],"from":[85],"graph":[87],"theory":[88],"universe":[89],"discuss":[92],"ways":[93],"in":[94],"which":[95],"used":[99],"reveal":[101],"hidden":[102],"properties":[103],"features":[105],"network.":[108],"network":[110],"profiling":[111],"combined":[112],"knowledge":[114],"extraction":[115],"will":[116],"help":[117],"us":[118],"better":[120],"understand":[121],"biological":[123],"significance":[124],"system.":[127]},"counts_by_year":[{"year":2026,"cited_by_count":17},{"year":2025,"cited_by_count":61},{"year":2024,"cited_by_count":100},{"year":2023,"cited_by_count":71},{"year":2022,"cited_by_count":60},{"year":2021,"cited_by_count":85},{"year":2020,"cited_by_count":82},{"year":2019,"cited_by_count":67},{"year":2018,"cited_by_count":59},{"year":2017,"cited_by_count":59},{"year":2016,"cited_by_count":39},{"year":2015,"cited_by_count":38},{"year":2014,"cited_by_count":25},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":18}],"updated_date":"2026-05-29T09:21:14.243279","created_date":"2025-10-10T00:00:00"}
