{"id":"https://openalex.org/W2152738348","doi":"https://doi.org/10.1186/1756-0381-3-3","title":"Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration","display_name":"Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration","publication_year":2010,"publication_date":"2010-06-04","ids":{"openalex":"https://openalex.org/W2152738348","doi":"https://doi.org/10.1186/1756-0381-3-3","mag":"2152738348","pmid":"https://pubmed.ncbi.nlm.nih.gov/20525377"},"language":"en","primary_location":{"id":"doi:10.1186/1756-0381-3-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-3-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-3-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-3-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089638887","display_name":"Rex T. Nelson","orcid":"https://orcid.org/0000-0001-6222-3347"},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rex T Nelson","raw_affiliation_strings":["USDA-ARS, CICGR, 100 Osborne Dr. Rm. 1575, Ames, IA, 50011-1010 USA","USDA-ARS, CICGR, Ames, USA"],"affiliations":[{"raw_affiliation_string":"USDA-ARS, CICGR, 100 Osborne Dr. Rm. 1575, Ames, IA, 50011-1010 USA","institution_ids":[]},{"raw_affiliation_string":"USDA-ARS, CICGR, Ames, USA","institution_ids":["https://openalex.org/I1312222531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059221903","display_name":"Shulamit Avraham","orcid":null},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shulamit Avraham","raw_affiliation_strings":["Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA","Cold Spring Harbor Laboratory, Cold Spring Harbor, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"Cold Spring Harbor Laboratory, Cold Spring Harbor, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103567863","display_name":"Randy C. Shoemaker","orcid":null},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Randy C Shoemaker","raw_affiliation_strings":["USDA-ARS, CICGR, 100 Osborne Dr. Rm. 1575, Ames, IA, 50011-1010 USA","USDA-ARS, CICGR, Ames, USA"],"affiliations":[{"raw_affiliation_string":"USDA-ARS, CICGR, 100 Osborne Dr. Rm. 1575, Ames, IA, 50011-1010 USA","institution_ids":[]},{"raw_affiliation_string":"USDA-ARS, CICGR, Ames, USA","institution_ids":["https://openalex.org/I1312222531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011935162","display_name":"Gregory D. May","orcid":null},"institutions":[{"id":"https://openalex.org/I1310183320","display_name":"National Center for Genome Resources","ror":"https://ror.org/01p4cne93","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1310183320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gregory D May","raw_affiliation_strings":["National Center for Genome Resources, 2935 Rodeo Park Drive East, Santa Fe, NM 87505, USA","National Center for Genome Resources, Santa Fe, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Genome Resources, 2935 Rodeo Park Drive East, Santa Fe, NM 87505, USA","institution_ids":["https://openalex.org/I1310183320"]},{"raw_affiliation_string":"National Center for Genome Resources, Santa Fe, USA","institution_ids":["https://openalex.org/I1310183320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077105419","display_name":"Doreen Ware","orcid":"https://orcid.org/0000-0002-8125-3821"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Doreen Ware","raw_affiliation_strings":["Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA","USDA-ARS, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA","USDA-ARS, Cold Spring Harbor, USA","Cold Spring Harbor Laboratory, Cold Spring Harbor, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"USDA-ARS, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA","institution_ids":[]},{"raw_affiliation_string":"USDA-ARS, Cold Spring Harbor, USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"Cold Spring Harbor Laboratory, Cold Spring Harbor, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039557744","display_name":"Damian D. G. Gessler","orcid":null},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Damian DG Gessler","raw_affiliation_strings":["University of Arizona, 1657 E. Helen St., Tucson, AZ 85721, USA","University of Arizona, Tucson, USA"],"affiliations":[{"raw_affiliation_string":"University of Arizona, 1657 E. Helen St., Tucson, AZ 85721, USA","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"University of Arizona, Tucson, USA","institution_ids":["https://openalex.org/I138006243"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5039557744"],"corresponding_institution_ids":["https://openalex.org/I138006243"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9488,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.74753967,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"3","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9718999862670898,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8224951028823853},{"id":"https://openalex.org/keywords/data-web","display_name":"Data Web","score":0.6030792593955994},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.5937325954437256},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5827574729919434},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5211349129676819},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.48394158482551575},{"id":"https://openalex.org/keywords/semantic-web-stack","display_name":"Semantic Web Stack","score":0.4808664917945862},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.4665728807449341},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4640309810638428},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.4395333230495453},{"id":"https://openalex.org/keywords/owl-s","display_name":"OWL-S","score":0.4240148365497589},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.34432780742645264}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8224951028823853},{"id":"https://openalex.org/C162005631","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Data Web","level":3,"score":0.6030792593955994},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5937325954437256},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5827574729919434},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5211349129676819},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.48394158482551575},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.4808664917945862},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.4665728807449341},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4640309810638428},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.4395333230495453},{"id":"https://openalex.org/C50382505","wikidata":"https://www.wikidata.org/wiki/Q2553356","display_name":"OWL-S","level":4,"score":0.4240148365497589},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.34432780742645264}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/1756-0381-3-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-3-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-3-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:20525377","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20525377","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:doaj.org/article:27a8c9f34ec146b5944ec251f3a82318","is_oa":true,"landing_page_url":"https://doaj.org/article/27a8c9f34ec146b5944ec251f3a82318","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 3, Iss 1, p 3 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2894815","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2894815","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1756-0381-3-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-3-3","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-3-3","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.5199999809265137,"id":"https://metadata.un.org/sdg/8"}],"awards":[{"id":"https://openalex.org/G4345379830","display_name":null,"funder_award_id":"735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6124298671","display_name":null,"funder_award_id":"0735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6315925162","display_name":"A Virtual Plant Information Network (VPIN)","funder_award_id":"0516487","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332605","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152738348.pdf","grobid_xml":"https://content.openalex.org/works/W2152738348.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W98346458","https://openalex.org/W1527878510","https://openalex.org/W1692319794","https://openalex.org/W1972793074","https://openalex.org/W1987476817","https://openalex.org/W2002615469","https://openalex.org/W2034451191","https://openalex.org/W2067618506","https://openalex.org/W2081730254","https://openalex.org/W2087187521","https://openalex.org/W2094819114","https://openalex.org/W2097311303","https://openalex.org/W2103017472","https://openalex.org/W2106957945","https://openalex.org/W2112744842","https://openalex.org/W2135177518","https://openalex.org/W2147231162","https://openalex.org/W2158304452","https://openalex.org/W2170276224","https://openalex.org/W2185045232","https://openalex.org/W2914098457","https://openalex.org/W4233379990","https://openalex.org/W4405646406","https://openalex.org/W4409798803"],"related_works":["https://openalex.org/W2349698472","https://openalex.org/W2366430559","https://openalex.org/W2005492920","https://openalex.org/W2023110884","https://openalex.org/W2069569467","https://openalex.org/W1985801232","https://openalex.org/W1521613906","https://openalex.org/W2159024133","https://openalex.org/W3150576547","https://openalex.org/W2038021528"],"abstract_inverted_index":{"The":[0],"need":[1],"for":[2,39,67],"semantic":[3,42,70],"integration":[4],"technologies":[5],"has":[6],"preceded":[7],"available":[8,66],"solutions.":[9],"We":[10],"report":[11],"the":[12,76],"feasibility":[13],"of":[14,47,79],"mapping":[15],"high":[16],"priority":[17],"data":[18,23,55],"from":[19],"local,":[20],"independent,":[21],"idiosyncratic":[22],"schemas":[24],"to":[25],"common":[26],"shared":[27],"concepts":[28],"as":[29],"implemented":[30],"in":[31,41],"web-accessible":[32],"ontologies.":[33],"These":[34],"mappings":[35],"are":[36],"then":[37],"amenable":[38],"use":[40],"web":[43],"services.":[44],"Our":[45],"implementation":[46],"approximately":[48],"two":[49],"dozen":[50],"services":[51],"means":[52],"that":[53],"biological":[54],"at":[56],"three":[57],"large":[58],"information":[59],"resources":[60],"(Gramene,":[61],"SoyBase,":[62],"and":[63,72],"LIS)":[64],"is":[65],"programmatic":[68],"access,":[69],"searching,":[71],"enhanced":[73],"interaction":[74],"between":[75],"separate":[77],"missions":[78],"these":[80],"resources.":[81]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
