{"id":"https://openalex.org/W2121463966","doi":"https://doi.org/10.1186/1756-0381-2-9","title":"A biclustering algorithm based on a Bicluster Enumeration Tree: application to DNA microarray data","display_name":"A biclustering algorithm based on a Bicluster Enumeration Tree: application to DNA microarray data","publication_year":2009,"publication_date":"2009-12-01","ids":{"openalex":"https://openalex.org/W2121463966","doi":"https://doi.org/10.1186/1756-0381-2-9","mag":"2121463966","pmid":"https://pubmed.ncbi.nlm.nih.gov/20015398"},"language":"en","primary_location":{"id":"doi:10.1186/1756-0381-2-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-2-9","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-2-9","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-2-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013874328","display_name":"Wassim Ayadi","orcid":"https://orcid.org/0000-0002-4017-6057"},"institutions":[{"id":"https://openalex.org/I4210162517","display_name":"Centre International des Technologies de l'Environnement de Tunis","ror":"https://ror.org/05v2dq092","country_code":"TN","type":"government","lineage":["https://openalex.org/I4210162517"]},{"id":"https://openalex.org/I4210088638","display_name":"Higher Institute of Management","ror":"https://ror.org/003sxhp42","country_code":"RU","type":"education","lineage":["https://openalex.org/I4210088638"]},{"id":"https://openalex.org/I49451733","display_name":"Universit\u00e9 d'Angers","ror":"https://ror.org/04yrqp957","country_code":"FR","type":"education","lineage":["https://openalex.org/I49451733"]}],"countries":["FR","RU","TN"],"is_corresponding":true,"raw_author_name":"Wassim Ayadi","raw_affiliation_strings":["UTIC, Higher School of Sciences and Technologies of Tunis, 1008 Tunis, Tunisia. wassim.ayadi@gmail.com","LERIA, Universit\u00e9 d'Angers, Angers, France","UTIC, Higher School of Sciences and Technologies of Tunis, Tunis, Tunisia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UTIC, Higher School of Sciences and Technologies of Tunis, 1008 Tunis, Tunisia. wassim.ayadi@gmail.com","institution_ids":["https://openalex.org/I4210088638"]},{"raw_affiliation_string":"LERIA, Universit\u00e9 d'Angers, Angers, France","institution_ids":["https://openalex.org/I49451733"]},{"raw_affiliation_string":"UTIC, Higher School of Sciences and Technologies of Tunis, Tunis, Tunisia","institution_ids":["https://openalex.org/I4210162517"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038041759","display_name":"Mourad Elloumi","orcid":"https://orcid.org/0000-0001-7119-9422"},"institutions":[{"id":"https://openalex.org/I4210162517","display_name":"Centre International des Technologies de l'Environnement de Tunis","ror":"https://ror.org/05v2dq092","country_code":"TN","type":"government","lineage":["https://openalex.org/I4210162517"]},{"id":"https://openalex.org/I108714496","display_name":"Tunis University","ror":"https://ror.org/02q1spa57","country_code":"TN","type":"education","lineage":["https://openalex.org/I108714496"]}],"countries":["TN"],"is_corresponding":false,"raw_author_name":"Mourad Elloumi","raw_affiliation_strings":["UTIC, Higher School of Sciences and Technologies of Tunis, 1008, Tunis, Tunisia","UTIC, Higher School of Sciences and Technologies of Tunis, Tunis, Tunisia#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UTIC, Higher School of Sciences and Technologies of Tunis, 1008, Tunis, Tunisia","institution_ids":["https://openalex.org/I4210162517"]},{"raw_affiliation_string":"UTIC, Higher School of Sciences and Technologies of Tunis, Tunis, Tunisia#TAB#","institution_ids":["https://openalex.org/I108714496"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016332970","display_name":"Jin\u2010Kao Hao","orcid":"https://orcid.org/0000-0001-8813-4377"},"institutions":[{"id":"https://openalex.org/I49451733","display_name":"Universit\u00e9 d'Angers","ror":"https://ror.org/04yrqp957","country_code":"FR","type":"education","lineage":["https://openalex.org/I49451733"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jin-Kao Hao","raw_affiliation_strings":["LERIA, Universit\u00e9 d'Angers, 2 Boulevard Lavoisier, 49045, Angers, France","LERIA - Universit\u00e9 d'Angers,Angers,France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LERIA, Universit\u00e9 d'Angers, 2 Boulevard Lavoisier, 49045, Angers, France","institution_ids":["https://openalex.org/I49451733"]},{"raw_affiliation_string":"LERIA - Universit\u00e9 d'Angers,Angers,France","institution_ids":["https://openalex.org/I49451733"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5013874328"],"corresponding_institution_ids":["https://openalex.org/I4210088638","https://openalex.org/I4210162517","https://openalex.org/I49451733"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.599,"has_fulltext":true,"cited_by_count":79,"citation_normalized_percentile":{"value":0.89876568,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9781000018119812,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9781000018119812,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.006200000178068876,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.004600000102072954,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biclustering","display_name":"Biclustering","score":0.9463543891906738},{"id":"https://openalex.org/keywords/enumeration","display_name":"Enumeration","score":0.8532513976097107},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6857234239578247},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6667521595954895},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6541559100151062},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.542082667350769},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4980628490447998},{"id":"https://openalex.org/keywords/row","display_name":"Row","score":0.4935101270675659},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4441150426864624},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19545742869377136},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1749143898487091},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10729944705963135},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10495427250862122},{"id":"https://openalex.org/keywords/correlation-clustering","display_name":"Correlation clustering","score":0.10298433899879456},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09046828746795654}],"concepts":[{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.9463543891906738},{"id":"https://openalex.org/C156340839","wikidata":"https://www.wikidata.org/wiki/Q2704791","display_name":"Enumeration","level":2,"score":0.8532513976097107},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6857234239578247},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6667521595954895},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6541559100151062},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.542082667350769},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4980628490447998},{"id":"https://openalex.org/C135598885","wikidata":"https://www.wikidata.org/wiki/Q1366302","display_name":"Row","level":2,"score":0.4935101270675659},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4441150426864624},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19545742869377136},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1749143898487091},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10729944705963135},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10495427250862122},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.10298433899879456},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09046828746795654},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/1756-0381-2-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-2-9","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-2-9","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},{"id":"pmid:20015398","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20015398","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData mining","raw_type":null},{"id":"pmh:oai:HAL:hal-03350577v1","is_oa":false,"landing_page_url":"https://univ-angers.hal.science/hal-03350577","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, 2009, 2 (1), Non sp\u00e9cifi\u00e9. &#x27E8;10.1186/1756-0381-2-9&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:91536b9ada79472fb6797893a3dbc9ce","is_oa":true,"landing_page_url":"https://doaj.org/article/91536b9ada79472fb6797893a3dbc9ce","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Mining, Vol 2, Iss 1, p 9 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2804695","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2804695","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioData Min","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1756-0381-2-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1756-0381-2-9","pdf_url":"https://biodatamining.biomedcentral.com/counter/pdf/10.1186/1756-0381-2-9","source":{"id":"https://openalex.org/S84409260","display_name":"BioData Mining","issn_l":"1756-0381","issn":["1756-0381"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BioData Mining","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121463966.pdf","grobid_xml":"https://content.openalex.org/works/W2121463966.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W161166415","https://openalex.org/W189030447","https://openalex.org/W601739477","https://openalex.org/W1493217831","https://openalex.org/W1555490457","https://openalex.org/W1718512272","https://openalex.org/W1756950892","https://openalex.org/W1895263298","https://openalex.org/W1977496278","https://openalex.org/W1983524036","https://openalex.org/W1989504887","https://openalex.org/W2006411185","https://openalex.org/W2018744542","https://openalex.org/W2023416945","https://openalex.org/W2030977128","https://openalex.org/W2033070437","https://openalex.org/W2036328877","https://openalex.org/W2055849881","https://openalex.org/W2057682468","https://openalex.org/W2058849889","https://openalex.org/W2059398218","https://openalex.org/W2085349009","https://openalex.org/W2099137856","https://openalex.org/W2105883975","https://openalex.org/W2108480506","https://openalex.org/W2109501217","https://openalex.org/W2111914960","https://openalex.org/W2119282901","https://openalex.org/W2130095365","https://openalex.org/W2135000328","https://openalex.org/W2136107412","https://openalex.org/W2137167578","https://openalex.org/W2138612638","https://openalex.org/W2143274936","https://openalex.org/W2144544802","https://openalex.org/W2148560070","https://openalex.org/W2150102617","https://openalex.org/W2150641886","https://openalex.org/W2151763757","https://openalex.org/W2159578516","https://openalex.org/W2160091849","https://openalex.org/W2164910356","https://openalex.org/W2434205482","https://openalex.org/W2616627863","https://openalex.org/W2797177778","https://openalex.org/W4236489865","https://openalex.org/W4285719527","https://openalex.org/W4301791120"],"related_works":["https://openalex.org/W2152668278","https://openalex.org/W2117530081","https://openalex.org/W4254901886","https://openalex.org/W1979810043","https://openalex.org/W3084408672","https://openalex.org/W2397510698","https://openalex.org/W2506426934","https://openalex.org/W931334744","https://openalex.org/W2782899930","https://openalex.org/W2105685244"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"a":[2,23,66,89,101,132,187],"number":[3],"of":[4,22,29,34,38,72,126,153],"domains,":[5],"like":[6],"in":[7,48],"DNA":[8,49,73,164],"microarray":[9,50,74,165],"data":[10,24,51],"analysis,":[11],"we":[12,181],"need":[13],"to":[14,26,110,121,140,147,191,199,213],"cluster":[15],"simultaneously":[16],"rows":[17,30],"(genes)":[18],"and":[19,60,162],"columns":[20],"(conditions)":[21],"matrix":[25],"identify":[27],"groups":[28,33],"coherent":[31],"with":[32,175],"columns.":[35],"This":[36],"kind":[37],"clustering":[39],"is":[40,79,157,197,206],"called":[41,93,105],"biclustering.":[42],"Biclustering":[43],"algorithms":[44,56],"are":[45,57],"extensively":[46],"used":[47],"analysis.":[52],"More":[53],"effective":[54],"biclustering":[55,71,178],"highly":[58],"desirable":[59],"needed.":[61],"METHODS:":[62],"We":[63],"introduce":[64],"BiMine,":[65],"new":[67,90,102],"enumeration":[68,118,138],"algorithm":[69,78,156],"for":[70],"data.":[75,166],"The":[76,151,167,204],"proposed":[77,155,195],"based":[80],"on":[81,88],"three":[82],"original":[83],"features.":[84],"First,":[85],"BiMine":[86,99,130,172],"relies":[87],"evaluation":[91],"function":[92],"Average":[94],"Spearman's":[95],"rho":[96],"(ASR).":[97],"Second,":[98],"uses":[100],"tree":[103,142],"structure,":[104],"Bicluster":[106],"Enumeration":[107],"Tree":[108],"(BET),":[109],"represent":[111],"the":[112,117,123,127,137,154,183,211],"different":[113],"biclusters":[114],"discovered":[115],"during":[116],"process.":[119],"Third,":[120],"avoid":[122],"combinatorial":[124],"explosion":[125],"search":[128],"tree,":[129],"introduces":[131],"parametric":[133],"rule":[134],"that":[135,144,171,193],"allows":[136],"process":[139],"cut":[141],"branches":[143],"cannot":[145],"lead":[146],"good":[148],"biclusters.":[149,203],"RESULTS:":[150],"performance":[152],"assessed":[158],"using":[159,186],"both":[160],"synthetic":[161],"real":[163],"experimental":[168],"results":[169],"show":[170,192],"competes":[173],"well":[174],"several":[176],"other":[177],"methods.":[179],"Moreover,":[180],"test":[182],"biological":[184],"significance":[185],"gene":[188],"annotation":[189],"web-tool":[190],"our":[194],"method":[196],"able":[198],"produce":[200],"biologically":[201],"relevant":[202],"software":[205],"available":[207],"upon":[208],"request":[209],"from":[210],"authors":[212],"academic":[214],"users.":[215]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":6}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
