{"id":"https://openalex.org/W1547519124","doi":"https://doi.org/10.1186/1752-0509-9-s1-s6","title":"Protein-protein docking on hardware accelerators: comparison of GPU and MIC architectures","display_name":"Protein-protein docking on hardware accelerators: comparison of GPU and MIC architectures","publication_year":2015,"publication_date":"2015-01-21","ids":{"openalex":"https://openalex.org/W1547519124","doi":"https://doi.org/10.1186/1752-0509-9-s1-s6","mag":"1547519124","pmid":"https://pubmed.ncbi.nlm.nih.gov/25707855"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-9-s1-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-9-s1-s6","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-9-S1-S6","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-9-S1-S6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064806463","display_name":"Takehiro Shimoda","orcid":null},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]},{"id":"https://openalex.org/I205924995","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I1319490839","https://openalex.org/I205924995"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takehiro Shimoda","raw_affiliation_strings":["Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","Japan Society for the Promotion of Science (JSPS) Research Fellow, Japan","Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Japan Society for the Promotion of Science (JSPS) Research Fellow, Japan","institution_ids":["https://openalex.org/I205924995"]},{"raw_affiliation_string":"Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111451849","display_name":"Shuji Suzuki","orcid":null},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]},{"id":"https://openalex.org/I205924995","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I1319490839","https://openalex.org/I205924995"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shuji Suzuki","raw_affiliation_strings":["Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","Education Academy of Computational Life Sciences (ACLS), Tokyo Institute of Technology, 2-12-1 W8-93, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","Japan Society for the Promotion of Science (JSPS) Research Fellow, Japan","Education Academy of Computational Life Sciences (ACLS), Tokyo Institute of Technology, Meguro-ku, Japan","Japan Society for the Promotion of Science (JSPS) Research Fellow, , Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Education Academy of Computational Life Sciences (ACLS), Tokyo Institute of Technology, 2-12-1 W8-93, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Japan Society for the Promotion of Science (JSPS) Research Fellow, Japan","institution_ids":["https://openalex.org/I205924995"]},{"raw_affiliation_string":"Education Academy of Computational Life Sciences (ACLS), Tokyo Institute of Technology, Meguro-ku, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Japan Society for the Promotion of Science (JSPS) Research Fellow, , Japan","institution_ids":["https://openalex.org/I205924995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061510293","display_name":"Masahito Ohue","orcid":"https://orcid.org/0000-0002-0120-1643"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]},{"id":"https://openalex.org/I205924995","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I1319490839","https://openalex.org/I205924995"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masahito Ohue","raw_affiliation_strings":["Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","Education Academy of Computational Life Sciences (ACLS), Tokyo Institute of Technology, 2-12-1 W8-93, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","Japan Society for the Promotion of Science (JSPS) Research Fellow, Japan","Education Academy of Computational Life Sciences (ACLS), Tokyo Institute of Technology, Meguro-ku, Japan","Japan Society for the Promotion of Science (JSPS) Research Fellow, , Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Education Academy of Computational Life Sciences (ACLS), Tokyo Institute of Technology, 2-12-1 W8-93, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Japan Society for the Promotion of Science (JSPS) Research Fellow, Japan","institution_ids":["https://openalex.org/I205924995"]},{"raw_affiliation_string":"Education Academy of Computational Life Sciences (ACLS), Tokyo Institute of Technology, Meguro-ku, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Japan Society for the Promotion of Science (JSPS) Research Fellow, , Japan","institution_ids":["https://openalex.org/I205924995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004756730","display_name":"Takashi Ishida","orcid":"https://orcid.org/0000-0002-9478-3223"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takashi Ishida","raw_affiliation_strings":["Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067025136","display_name":"Yutaka Akiyama","orcid":"https://orcid.org/0000-0003-2863-8703"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]},{"id":"https://openalex.org/I205924995","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I1319490839","https://openalex.org/I205924995"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Yutaka Akiyama","raw_affiliation_strings":["Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","Japan Society for the Promotion of Science (JSPS) Research Fellow, Japan","Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, 152-8550, Tokyo, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Japan Society for the Promotion of Science (JSPS) Research Fellow, Japan","institution_ids":["https://openalex.org/I205924995"]},{"raw_affiliation_string":"Department of Computer Science, Graduate of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Japan","institution_ids":["https://openalex.org/I114531698"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5067025136"],"corresponding_institution_ids":["https://openalex.org/I114531698","https://openalex.org/I205924995"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":1.2401,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.78013876,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"9","issue":"S1","first_page":"S6","last_page":"S6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.37389999628067017,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.37389999628067017,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.10010000318288803,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.06069999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6444593667984009},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.6007397174835205},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5830689072608948},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4402746558189392},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4128243923187256},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.38689014315605164},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18999367952346802}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6444593667984009},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.6007397174835205},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5830689072608948},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4402746558189392},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4128243923187256},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.38689014315605164},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18999367952346802},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1752-0509-9-s1-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-9-s1-s6","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-9-S1-S6","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:25707855","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25707855","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:3334598","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4331681","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:t2r2.star.titech.ac.jp:50251701","is_oa":false,"landing_page_url":"http://t2r2.star.titech.ac.jp/cgi-bin/publicationinfo.cgi?q_publication_content_number=CTT100677438","pdf_url":null,"source":{"id":"https://openalex.org/S4377196385","display_name":"Tokyo Tech Research Repository (Tokyo Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114531698","host_organization_name":"Tokyo Institute of Technology","host_organization_lineage":["https://openalex.org/I114531698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-9-s1-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-9-s1-s6","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-9-S1-S6","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G4588193779","display_name":"Computational drug discovery techniques with systematic target identification and high-performance molecular simulation","funder_award_id":"24240044","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G777208719","display_name":"\u30bf\u30f3\u30d1\u30af\u8cea\u9593\u76f8\u4e92\u4f5c\u7528\u4e88\u6e2c\u306b\u57fa\u3065\u304f\u5275\u85ac\u30bf\u30fc\u30b2\u30c3\u30c8\u63a2\u7d22\u306e\u305f\u3081\u306e\u4e26\u5217\u8a08\u7b97\u30b7\u30b9\u30c6\u30e0\u958b\u767a","funder_award_id":"14J30002","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1547519124.pdf","grobid_xml":"https://content.openalex.org/works/W1547519124.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W57243869","https://openalex.org/W76842085","https://openalex.org/W1587157059","https://openalex.org/W1981150561","https://openalex.org/W1995775850","https://openalex.org/W2000383223","https://openalex.org/W2058071327","https://openalex.org/W2081056566","https://openalex.org/W2117683095","https://openalex.org/W2122924578","https://openalex.org/W2130479394","https://openalex.org/W2142485291","https://openalex.org/W2148356001","https://openalex.org/W2153731681","https://openalex.org/W2154629969","https://openalex.org/W2155417823","https://openalex.org/W2157991822","https://openalex.org/W2164255317","https://openalex.org/W2168391147","https://openalex.org/W2171249995","https://openalex.org/W2915344963","https://openalex.org/W4244600229"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W2062208111","https://openalex.org/W5284979","https://openalex.org/W4245853730"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,67,85,111],"hardware":[2],"accelerators":[3],"will":[4],"provide":[5],"solutions":[6],"to":[7],"computationally":[8],"complex":[9],"problems":[10],"in":[11,93],"bioinformatics":[12],"fields.":[13],"However,":[14,97],"the":[15,21,24,37,42,57,71,80,91,94,98],"effect":[16],"of":[17,23,28,44,59,107],"acceleration":[18,45],"depends":[19],"on":[20,56],"nature":[22],"application,":[25],"thus":[26],"selection":[27],"an":[29],"appropriate":[30],"accelerator":[31],"requires":[32],"some":[33],"consideration.":[34],"RESULTS:":[35],"In":[36],"present":[38],"study,":[39],"we":[40],"compared":[41],"effects":[43],"using":[46],"graphics":[47],"processing":[48],"unit":[49],"(GPU)":[50],"and":[51],"many":[52],"integrated":[53],"core":[54],"(MIC)":[55],"speed":[58],"fast":[60],"Fourier":[61],"transform":[62],"(FFT)-based":[63],"protein-protein":[64,72,124],"docking":[65,73,125],"calculation.":[66],"GPU":[68,115],"implementation":[69,89,95],"performed":[70],"calculations":[74],"approximately":[75],"five":[76],"times":[77],"faster":[78],"than":[79,119],"MIC":[81,86,120],"offload":[82],"mode":[83,88],"implementation.":[84],"native":[87],"has":[90],"advantage":[92],"costs.":[96],"performance":[99],"was":[100],"worse":[101],"with":[102],"larger":[103],"protein":[104],"pairs":[105],"because":[106],"memory":[108],"limitations.":[109],"CONCLUSION:":[110],"results":[112],"suggest":[113],"that":[114],"is":[116],"more":[117],"suitable":[118],"for":[121],"accelerating":[122],"FFT-based":[123],"applications.":[126]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}