{"id":"https://openalex.org/W1714482601","doi":"https://doi.org/10.1186/1752-0509-9-s1-s5","title":"Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks","display_name":"Transcription factor and microRNA-regulated network motifs for cancer and signal transduction networks","publication_year":2015,"publication_date":"2015-01-21","ids":{"openalex":"https://openalex.org/W1714482601","doi":"https://doi.org/10.1186/1752-0509-9-s1-s5","mag":"1714482601","pmid":"https://pubmed.ncbi.nlm.nih.gov/25707690"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-9-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-9-s1-s5","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-9-S1-S5","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-9-S1-S5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111985089","display_name":"Wen Tsong Hsieh","orcid":null},"institutions":[{"id":"https://openalex.org/I184693016","display_name":"China Medical University","ror":"https://ror.org/00v408z34","country_code":"TW","type":"education","lineage":["https://openalex.org/I184693016"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Wen-Tsong Hsieh","raw_affiliation_strings":["Department of Pharmacology, China Medical University, Taiwan, 40402","Department of Pharmacology, China Medical University, , Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacology, China Medical University, Taiwan, 40402","institution_ids":["https://openalex.org/I184693016"]},{"raw_affiliation_string":"Department of Pharmacology, China Medical University, , Taiwan","institution_ids":["https://openalex.org/I184693016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061160450","display_name":"Ke-Rung Tzeng","orcid":null},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ke-Rung Tzeng","raw_affiliation_strings":["Department of Biomedical Informatics, Asia University, Taiwan, 41354","Department of Biomedical Informatics, Asia University, , Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Asia University, Taiwan, 41354","institution_ids":["https://openalex.org/I143578492"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Asia University, , Taiwan","institution_ids":["https://openalex.org/I143578492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109890670","display_name":"Jin-Shuei Ciou","orcid":null},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jin-Shuei Ciou","raw_affiliation_strings":["Department of Biomedical Informatics, Asia University, Taiwan, 41354","Department of Biomedical Informatics, Asia University, , Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Asia University, Taiwan, 41354","institution_ids":["https://openalex.org/I143578492"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Asia University, , Taiwan","institution_ids":["https://openalex.org/I143578492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018669587","display_name":"Jeffrey J. P. Tsai","orcid":"https://orcid.org/0000-0003-0473-5170"},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jeffrey JP Tsai","raw_affiliation_strings":["Department of Biomedical Informatics, Asia University, Taiwan, 41354","Department of Biomedical Informatics, Asia University, , Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Asia University, Taiwan, 41354","institution_ids":["https://openalex.org/I143578492"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Asia University, , Taiwan","institution_ids":["https://openalex.org/I143578492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085998096","display_name":"Nilubon Kurubanjerdjit","orcid":"https://orcid.org/0000-0002-3038-3837"},"institutions":[{"id":"https://openalex.org/I34002243","display_name":"Mae Fah Luang University","ror":"https://ror.org/00mwhaw71","country_code":"TH","type":"education","lineage":["https://openalex.org/I34002243"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Nilubon Kurubanjerdjit","raw_affiliation_strings":["School of Information Technology, Mae Fah Luang University, Chiang Rai, Thailand, 57100"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Technology, Mae Fah Luang University, Chiang Rai, Thailand, 57100","institution_ids":["https://openalex.org/I34002243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056626970","display_name":"Chien\u2010Hung Huang","orcid":"https://orcid.org/0000-0003-3905-8915"},"institutions":[{"id":"https://openalex.org/I40689657","display_name":"National Formosa University","ror":"https://ror.org/00q523p52","country_code":"TW","type":"education","lineage":["https://openalex.org/I40689657"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Chien-Hung Huang","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Formosa University, Taiwan, 632","Department of Computer Science and Information Engineering National Formosa University Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Formosa University, Taiwan, 632","institution_ids":["https://openalex.org/I40689657"]},{"raw_affiliation_string":"Department of Computer Science and Information Engineering National Formosa University Taiwan","institution_ids":["https://openalex.org/I40689657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111481756","display_name":"Ka Lok Ng","orcid":null},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]},{"id":"https://openalex.org/I184693016","display_name":"China Medical University","ror":"https://ror.org/00v408z34","country_code":"TW","type":"education","lineage":["https://openalex.org/I184693016"]},{"id":"https://openalex.org/I4210126829","display_name":"China Medical University Hospital","ror":"https://ror.org/0368s4g32","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I4210126829"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Ka-Lok Ng","raw_affiliation_strings":["Department of Biomedical Informatics, Asia University, Taiwan, 41354","Department of Medical Research, China Medical University Hospital, China Medical University, Taichung, 40402, Taiwan","Department of Biomedical Informatics, Asia University, , Taiwan","Department of Medical Research, China Medical University Hospital, China Medical University, Taichung, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Asia University, Taiwan, 41354","institution_ids":["https://openalex.org/I143578492"]},{"raw_affiliation_string":"Department of Medical Research, China Medical University Hospital, China Medical University, Taichung, 40402, Taiwan","institution_ids":["https://openalex.org/I4210126829","https://openalex.org/I184693016"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Asia University, , Taiwan","institution_ids":["https://openalex.org/I143578492"]},{"raw_affiliation_string":"Department of Medical Research, China Medical University Hospital, China Medical University, Taichung, Taiwan","institution_ids":["https://openalex.org/I4210126829","https://openalex.org/I184693016"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5056626970","https://openalex.org/A5111481756"],"corresponding_institution_ids":["https://openalex.org/I143578492","https://openalex.org/I184693016","https://openalex.org/I40689657","https://openalex.org/I4210126829"],"apc_list":null,"apc_paid":null,"fwci":3.3135,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.92563225,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"9","issue":"S1","first_page":"S5","last_page":"S5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6259999871253967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6259999871253967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.07240000367164612,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.029899999499320984,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6839064359664917},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6765614748001099},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6223521828651428},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6096314787864685},{"id":"https://openalex.org/keywords/crosstalk","display_name":"Crosstalk","score":0.6094805598258972},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.591221809387207},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5613406896591187},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4844977557659149},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.47088178992271423},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.43414124846458435},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4262259602546692},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34907668828964233},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33049482107162476},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2634813189506531}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6839064359664917},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6765614748001099},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6223521828651428},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6096314787864685},{"id":"https://openalex.org/C169822122","wikidata":"https://www.wikidata.org/wiki/Q230187","display_name":"Crosstalk","level":2,"score":0.6094805598258972},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.591221809387207},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5613406896591187},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4844977557659149},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.47088178992271423},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.43414124846458435},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4262259602546692},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34907668828964233},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33049482107162476},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2634813189506531},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1186/1752-0509-9-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-9-s1-s5","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-9-S1-S5","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:25707690","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25707690","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:3334597","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4331680","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-9-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-9-s1-s5","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-9-S1-S5","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3600122028","display_name":null,"funder_award_id":"NSC 102-2632-E-468-001-MY3","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G5209864148","display_name":null,"funder_award_id":"NSC 101-2221-E-150-088-MY2","funder_id":"https://openalex.org/F4320321040","funder_display_name":"National Science Council"},{"id":"https://openalex.org/G522915841","display_name":null,"funder_award_id":"102-2221","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G5998869094","display_name":null,"funder_award_id":"NSC 102-2221-E-468-024","funder_id":"https://openalex.org/F4320321040","funder_display_name":"National Science Council"},{"id":"https://openalex.org/G7535046332","display_name":null,"funder_award_id":"NSC 102-2632-E-468-001-MY3","funder_id":"https://openalex.org/F4320321040","funder_display_name":"National Science Council"},{"id":"https://openalex.org/G7540798631","display_name":null,"funder_award_id":"NSC 101-2221-E-150-088-MY2","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320323032","display_name":"Asia University","ror":"https://ror.org/038a1tp19"},{"id":"https://openalex.org/F4320324301","display_name":"China Medical University","ror":"https://ror.org/032d4f246"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1714482601.pdf","grobid_xml":"https://content.openalex.org/works/W1714482601.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W133636034","https://openalex.org/W144423133","https://openalex.org/W438626161","https://openalex.org/W576218553","https://openalex.org/W1566952502","https://openalex.org/W1599207601","https://openalex.org/W1599969036","https://openalex.org/W1648301895","https://openalex.org/W1808967201","https://openalex.org/W1969008341","https://openalex.org/W1974343943","https://openalex.org/W1976427962","https://openalex.org/W1990590381","https://openalex.org/W1993592538","https://openalex.org/W1995907191","https://openalex.org/W2006762210","https://openalex.org/W2008473350","https://openalex.org/W2011726658","https://openalex.org/W2012915718","https://openalex.org/W2014956626","https://openalex.org/W2016106370","https://openalex.org/W2019671474","https://openalex.org/W2021606207","https://openalex.org/W2023121881","https://openalex.org/W2028886234","https://openalex.org/W2036563087","https://openalex.org/W2044505245","https://openalex.org/W2049623112","https://openalex.org/W2049797028","https://openalex.org/W2051497876","https://openalex.org/W2062290101","https://openalex.org/W2086265047","https://openalex.org/W2090583090","https://openalex.org/W2095349462","https://openalex.org/W2098314151","https://openalex.org/W2102057828","https://openalex.org/W2102709156","https://openalex.org/W2106647330","https://openalex.org/W2107575419","https://openalex.org/W2108859156","https://openalex.org/W2109110326","https://openalex.org/W2109761160","https://openalex.org/W2110699703","https://openalex.org/W2111209092","https://openalex.org/W2112262143","https://openalex.org/W2112382927","https://openalex.org/W2115806147","https://openalex.org/W2126305708","https://openalex.org/W2126602684","https://openalex.org/W2127012419","https://openalex.org/W2131706188","https://openalex.org/W2133254839","https://openalex.org/W2136063185","https://openalex.org/W2136943892","https://openalex.org/W2139025111","https://openalex.org/W2140497888","https://openalex.org/W2142023052","https://openalex.org/W2143693563","https://openalex.org/W2144636447","https://openalex.org/W2144885342","https://openalex.org/W2144925670","https://openalex.org/W2150026213","https://openalex.org/W2153624566","https://openalex.org/W2160913143","https://openalex.org/W2162884852","https://openalex.org/W2167680767","https://openalex.org/W2169286052","https://openalex.org/W2327496436","https://openalex.org/W2530014580","https://openalex.org/W3103786587","https://openalex.org/W3103971085","https://openalex.org/W3105516843","https://openalex.org/W4246175567"],"related_works":["https://openalex.org/W2158714033","https://openalex.org/W78967844","https://openalex.org/W2949927938","https://openalex.org/W3213185671","https://openalex.org/W4210989272","https://openalex.org/W4206945140","https://openalex.org/W4386628104","https://openalex.org/W2029387041","https://openalex.org/W2130939068","https://openalex.org/W3163717165"],"abstract_inverted_index":{"BACKGROUND:":[0],"Molecular":[1],"networks":[2,10,60,64,126,165],"are":[3,71,206],"the":[4,33,58,68,83,123,133,163,186,196,210,213],"basis":[5],"of":[6,67,135,144,179,198,212],"biological":[7,98],"processes.":[8],"Such":[9],"can":[11,74,224,236],"be":[12,75,225],"decomposed":[13],"into":[14],"smaller":[15],"modules,":[16],"also":[17],"known":[18],"as":[19],"network":[20,69,118,136,191,199],"motifs.":[21],"These":[22,89],"motifs":[23,70,119,137,200],"show":[24],"interesting":[25],"dynamical":[26,93],"behaviors,":[27],"in":[28,40,138,184,201],"which":[29,49,73,95,208,223],"co-operativity":[30],"effects":[31],"between":[32,188],"motif":[34,55,86,182],"components":[35],"play":[36],"a":[37,46,176],"critical":[38],"role":[39,134,197],"human":[41],"diseases.":[42],"We":[43],"have":[44],"developed":[45],"motif-searching":[47],"algorithm,":[48],"is":[50,171,175,230,248],"able":[51],"to":[52,100,121,131],"identify":[53],"common":[54],"types":[56],"from":[57],"cancer":[59,139,164,190,202,245,253],"and":[61,78,117,155,166,192],"signal":[62],"transduction":[63],"(STNs).":[65],"Some":[66],"interconnected":[72],"merged":[76],"together":[77],"form":[79],"more":[80],"complex":[81],"structures,":[82],"so-called":[84],"coupled":[85],"structures":[87,90],"(CMS).":[88],"exhibit":[91],"mixed":[92],"behavior,":[94],"may":[96],"lead":[97],"organisms":[99],"perform":[101],"specific":[102,239],"functions.":[103],"RESULTS:":[104],"In":[105],"this":[106],"study,":[107],"we":[108,168],"integrate":[109],"transcription":[110,147],"factors":[111],"(TFs),":[112],"microRNAs":[113],"(miRNAs),":[114],"miRNA":[115],"targets":[116],"information":[120,242],"build":[122],"cancer-related":[124],"TF-miRNA-motif":[125],"(TMMN).":[127],"This":[128],"allows":[129],"us":[130],"examine":[132],"formation":[140],"at":[141],"different":[142],"levels":[143],"regulation,":[145],"i.e.":[146],"initiation":[148],"(TF":[149],"\u2192":[150,159],"miRNA),":[151],"gene-gene":[152],"interaction":[153],"(CMS),":[154],"post-transcriptional":[156],"regulation":[157],"(miRNA":[158],"target":[160],"genes).":[161],"Among":[162],"STNs":[167],"considered,":[169],"it":[170,247],"found":[172],"that":[173,233],"there":[174],"substantial":[177],"amount":[178],"crosstalking":[180],"through":[181],"interconnections,":[183],"particular,":[185],"crosstalk":[187],"prostate":[189],"PI3K-Akt":[193],"STN.To":[194],"validate":[195],"formation,":[203],"several":[204],"examples":[205],"presented":[207],"demonstrated":[209],"effectiveness":[211],"present":[214],"approach.":[215],"A":[216],"web-based":[217],"platform":[218],"has":[219],"been":[220],"set":[221],"up":[222],"accessed":[226],"at:":[227],"http://ppi.bioinfo.asia.edu.tw/pathway/.":[228],"It":[229],"very":[231,238],"likely":[232],"our":[234],"results":[235],"supply":[237],"CMS":[240],"missing":[241],"for":[243,252],"certain":[244],"types,":[246],"an":[249],"indispensable":[250],"tool":[251],"biology":[254],"research.":[255]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2016-06-24T00:00:00"}
