{"id":"https://openalex.org/W2137285890","doi":"https://doi.org/10.1186/1752-0509-8-s3-s6","title":"An novel frequent probability pattern mining algorithm based on circuit simulation method in uncertain biological networks","display_name":"An novel frequent probability pattern mining algorithm based on circuit simulation method in uncertain biological networks","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2137285890","doi":"https://doi.org/10.1186/1752-0509-8-s3-s6","mag":"2137285890","pmid":"https://pubmed.ncbi.nlm.nih.gov/25350277"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-8-s3-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-s3-s6","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-S3-S6","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-S3-S6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101699117","display_name":"Jieyue He","orcid":"https://orcid.org/0000-0002-3265-3351"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jieyue He","raw_affiliation_strings":["School of Computer Science and Engineering, Key Lab of Computer Network & Information Integration, MOE, Southeast University, Nanjing, 210018, China","School of Computer Science and Engineering, Key Lab of Computer Network and Information Integration, MOE, Southeast University, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Key Lab of Computer Network & Information Integration, MOE, Southeast University, Nanjing, 210018, China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Key Lab of Computer Network and Information Integration, MOE, Southeast University, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451083","display_name":"Chunyan Wang","orcid":"https://orcid.org/0000-0002-7882-577X"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunyan Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Key Lab of Computer Network & Information Integration, MOE, Southeast University, Nanjing, 210018, China","School of Computer Science and Engineering, Key Lab of Computer Network and Information Integration, MOE, Southeast University, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Key Lab of Computer Network & Information Integration, MOE, Southeast University, Nanjing, 210018, China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Key Lab of Computer Network and Information Integration, MOE, Southeast University, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043605350","display_name":"Kunpu Qiu","orcid":null},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kunpu Qiu","raw_affiliation_strings":["School of Computer Science and Engineering, Key Lab of Computer Network & Information Integration, MOE, Southeast University, Nanjing, 210018, China","School of Computer Science and Engineering, Key Lab of Computer Network and Information Integration, MOE, Southeast University, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Key Lab of Computer Network & Information Integration, MOE, Southeast University, Nanjing, 210018, China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Key Lab of Computer Network and Information Integration, MOE, Southeast University, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101909486","display_name":"Wei Zhong","orcid":"https://orcid.org/0000-0002-6199-1376"},"institutions":[{"id":"https://openalex.org/I127845322","display_name":"University of South Carolina Upstate","ror":"https://ror.org/00t9hhv14","country_code":"US","type":"education","lineage":["https://openalex.org/I127845322"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Zhong","raw_affiliation_strings":["Division of Mathematics and Computer Science, University of South Carolina, Upstate 800 University Way, Spartanburg, SC, 29303, USA","Division of Mathematics and Computer Science, University of South Carolina, Spartanburg, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Mathematics and Computer Science, University of South Carolina, Upstate 800 University Way, Spartanburg, SC, 29303, USA","institution_ids":["https://openalex.org/I127845322"]},{"raw_affiliation_string":"Division of Mathematics and Computer Science, University of South Carolina, Spartanburg, USA","institution_ids":["https://openalex.org/I127845322"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101699117"],"corresponding_institution_ids":["https://openalex.org/I76569877"],"apc_list":null,"apc_paid":null,"fwci":0.2846,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.60811264,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"8","issue":"Suppl 3","first_page":"S6","last_page":"S6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6779999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6779999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.09269999712705612,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.04270000010728836,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6548306941986084},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.617981493473053},{"id":"https://openalex.org/keywords/subgraph-isomorphism-problem","display_name":"Subgraph isomorphism problem","score":0.6020828485488892},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5922180414199829},{"id":"https://openalex.org/keywords/conditional-probability","display_name":"Conditional probability","score":0.4779938757419586},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46496492624282837},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.46254560351371765},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4475748836994171},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.4388953447341919},{"id":"https://openalex.org/keywords/network-motif","display_name":"Network motif","score":0.4294623136520386},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34635603427886963},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.3281651735305786},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25668132305145264},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22877967357635498},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.16837537288665771},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.15092340111732483},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09111040830612183},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0890229344367981}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6548306941986084},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.617981493473053},{"id":"https://openalex.org/C131992880","wikidata":"https://www.wikidata.org/wiki/Q2528185","display_name":"Subgraph isomorphism problem","level":3,"score":0.6020828485488892},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5922180414199829},{"id":"https://openalex.org/C44492722","wikidata":"https://www.wikidata.org/wiki/Q327069","display_name":"Conditional probability","level":2,"score":0.4779938757419586},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46496492624282837},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.46254560351371765},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4475748836994171},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.4388953447341919},{"id":"https://openalex.org/C60723933","wikidata":"https://www.wikidata.org/wiki/Q7001080","display_name":"Network motif","level":3,"score":0.4294623136520386},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34635603427886963},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.3281651735305786},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25668132305145264},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22877967357635498},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.16837537288665771},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.15092340111732483},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09111040830612183},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0890229344367981},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1752-0509-8-s3-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-s3-s6","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-S3-S6","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:25350277","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25350277","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4243085","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4243085","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-8-s3-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-s3-s6","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-S3-S6","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2137285890.pdf","grobid_xml":"https://content.openalex.org/works/W2137285890.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W61335082","https://openalex.org/W152613852","https://openalex.org/W1603304162","https://openalex.org/W1641749581","https://openalex.org/W1820943743","https://openalex.org/W1984220047","https://openalex.org/W1990600049","https://openalex.org/W2004865576","https://openalex.org/W2010369674","https://openalex.org/W2023832559","https://openalex.org/W2057272970","https://openalex.org/W2066303519","https://openalex.org/W2074250187","https://openalex.org/W2077895977","https://openalex.org/W2080498142","https://openalex.org/W2092176451","https://openalex.org/W2102243804","https://openalex.org/W2118349699","https://openalex.org/W2120825705","https://openalex.org/W2123017611","https://openalex.org/W2125580539","https://openalex.org/W2126602684","https://openalex.org/W2129035130","https://openalex.org/W2133695619","https://openalex.org/W2142125950","https://openalex.org/W2145100112","https://openalex.org/W2153624566","https://openalex.org/W2158501189","https://openalex.org/W2170726034","https://openalex.org/W2326518252","https://openalex.org/W2364870439","https://openalex.org/W2373591455","https://openalex.org/W2379245466","https://openalex.org/W2914218031"],"related_works":["https://openalex.org/W15348386","https://openalex.org/W1979431214","https://openalex.org/W4385510321","https://openalex.org/W2077895977","https://openalex.org/W782572168","https://openalex.org/W2215639193","https://openalex.org/W4389148664","https://openalex.org/W2098027521","https://openalex.org/W3087406311","https://openalex.org/W4214598766"],"abstract_inverted_index":{"BACKGROUND:":[0],"Motif":[1],"mining":[2,72,128],"has":[3],"always":[4],"been":[5],"a":[6,87,98],"hot":[7],"research":[8,15],"topic":[9],"in":[10,60,69,110,134,167,255,263,267,307,333],"bioinformatics.":[11],"Most":[12],"of":[13,65,132,142,157,165,195,223,234,274,286,298],"current":[14],"on":[16,20,81,107,146,192,220,280],"biological":[17,34,48,54,62,113],"networks":[18,136,228,233],"focuses":[19],"exact":[21],"motif":[22,59,71,330],"mining.":[23],"However,":[24],"due":[25],"to":[26,56,123,169,205,317,328],"the":[27,39,45,66,82,111,116,124,130,155,171,193,214,224,230,242,248,264,295,299,304,308,319,334],"inevitable":[28],"experimental":[29],"error":[30],"and":[31,47,208,229,237,293],"noisy":[32],"data,":[33],"network":[35],"data":[36,221],"represented":[37],"as":[38],"probability":[40,58,70,104,131,143,152,172,175,181,196,211,250,260,275,291,300,321,329],"model":[41,85],"could":[42],"better":[43],"reflect":[44],"authenticity":[46],"significance,":[49],"therefore,":[50],"it":[51],"is":[52,73,78,121,137,149,203,313],"more":[53],"meaningful":[55],"discover":[57,209,247],"uncertain":[61,112],"networks.":[63,114],"One":[64],"key":[67],"steps":[68],"frequent":[74,103,210,249,320],"pattern":[75],"discovery":[76,331],"which":[77,288,323],"usually":[79],"based":[80,106,118,145,180,191,279],"possible":[83,187],"world":[84,188],"having":[86],"relatively":[88],"high":[89],"computational":[90],"complexity.":[91],"METHODS:":[92],"In":[93],"this":[94],"paper,":[95],"we":[96],"present":[97],"novel":[99],"method":[100,202,244,283],"for":[101],"detecting":[102],"patterns":[105,212],"circuit":[108,147,158,178,281],"simulation":[109,148,179,282],"First,":[115],"partition":[117],"efficient":[119],"search":[120,296],"applied":[122,327],"non-tree":[125],"like":[126],"subgraph":[127,197],"where":[129],"occurrence":[133],"random":[135],"small.":[138],"Then,":[139],"an":[140,314],"algorithm":[141,194,273],"isomorphic":[144,153,182],"proposed.":[150],"The":[151,177,217,252,272],"combines":[154],"analysis":[156],"topology":[159],"structure":[160],"with":[161],"related":[162,269],"physical":[163],"properties":[164],"voltage":[166,310],"order":[168],"evaluate":[170],"isomorphism":[173,277,292,301],"between":[174],"subgraphs.":[176,251],"can":[183,245,324],"avoid":[184],"using":[185,303],"traditional":[186],"model.":[189],"Finally,":[190],"isomorphism,":[198],"two-step":[199],"hierarchical":[200],"clustering":[201],"used":[204],"cluster":[206],"subgraphs,":[207],"from":[213],"clusters.":[215],"RESULTS:":[216],"experiment":[218],"results":[219],"sets":[222],"Protein-Protein":[225],"Interaction":[226],"(PPI)":[227],"transcriptional":[231],"regulatory":[232],"E.":[235],"coli":[236],"S.":[238],"cerevisiae":[239],"show":[240],"that":[241],"proposed":[243],"efficiently":[246,326],"discovered":[253],"subgraphs":[254,287,302],"our":[256],"study":[257],"contain":[258],"all":[259],"motifs":[261],"reported":[262],"experiments":[265],"published":[266],"other":[268],"papers.":[270],"CONCLUSIONS:":[271],"graph":[276],"evaluation":[278],"excludes":[284],"most":[285],"are":[289],"not":[290],"reduces":[294],"space":[297],"mismatch":[305],"values":[306],"node":[309],"set.":[311],"It":[312],"innovative":[315],"way":[316],"find":[318],"patterns,":[322],"be":[325],"problems":[332],"further":[335],"studies.":[336]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
