{"id":"https://openalex.org/W2154181498","doi":"https://doi.org/10.1186/1752-0509-8-70","title":"NetworkViewer: visualizing biochemical reaction networks with embedded rendering of molecular interaction rules","display_name":"NetworkViewer: visualizing biochemical reaction networks with embedded rendering of molecular interaction rules","publication_year":2014,"publication_date":"2014-06-16","ids":{"openalex":"https://openalex.org/W2154181498","doi":"https://doi.org/10.1186/1752-0509-8-70","mag":"2154181498","pmid":"https://pubmed.ncbi.nlm.nih.gov/24934175"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-8-70","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-70","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-70","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-70","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102936483","display_name":"Hsueh-Chien Cheng","orcid":"https://orcid.org/0000-0002-5415-7885"},"institutions":[{"id":"https://openalex.org/I4210134534","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210134534"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hsueh-Chien Cheng","raw_affiliation_strings":["Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, 4 Memorial Drive, 20892 Bethesda, USA. cheng@cs.umd.edu","Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, 4 Memorial Drive, 20892, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, 4 Memorial Drive, 20892 Bethesda, USA. cheng@cs.umd.edu","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, 4 Memorial Drive, 20892, Bethesda, USA","institution_ids":["https://openalex.org/I4210134534","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103568208","display_name":"Bastian R. Angermann","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210134534","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210134534"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bastian R Angermann","raw_affiliation_strings":["Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, 4 Memorial Drive, 20892, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, 4 Memorial Drive, 20892, Bethesda, USA","institution_ids":["https://openalex.org/I4210134534","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074158993","display_name":"Fengkai Zhang","orcid":"https://orcid.org/0000-0001-7112-9328"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210134534","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210134534"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fengkai Zhang","raw_affiliation_strings":["Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, 4 Memorial Drive, 20892, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, 4 Memorial Drive, 20892, Bethesda, USA","institution_ids":["https://openalex.org/I4210134534","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059988994","display_name":"Martin Meier\u2010Schellersheim","orcid":"https://orcid.org/0000-0002-8754-6377"},"institutions":[{"id":"https://openalex.org/I4210134534","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210134534"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin Meier-Schellersheim","raw_affiliation_strings":["Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, 4 Memorial Drive, 20892, Bethesda, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, 4 Memorial Drive, 20892, Bethesda, USA","institution_ids":["https://openalex.org/I4210134534","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5102936483"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210134534"],"apc_list":null,"apc_paid":null,"fwci":1.9771,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.89721198,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"8","issue":"1","first_page":"70","last_page":"70"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.15549999475479126,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.15549999475479126,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.13600000739097595,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.08299999684095383,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7593207359313965},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.6670860052108765},{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.6355727910995483},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6113153696060181},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6048480272293091},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5061637759208679},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4903697967529297},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.4525656998157501},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4515652656555176},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2700459361076355},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.24568331241607666},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12998616695404053}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7593207359313965},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.6670860052108765},{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.6355727910995483},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6113153696060181},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6048480272293091},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5061637759208679},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4903697967529297},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.4525656998157501},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4515652656555176},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2700459361076355},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.24568331241607666},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12998616695404053},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1752-0509-8-70","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-70","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-70","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24934175","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24934175","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:3064876","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4094451","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-8-70","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-70","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-70","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154181498.pdf","grobid_xml":"https://content.openalex.org/works/W2154181498.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1668625893","https://openalex.org/W1842847600","https://openalex.org/W1977943543","https://openalex.org/W1995457482","https://openalex.org/W2001869885","https://openalex.org/W2014449669","https://openalex.org/W2018810979","https://openalex.org/W2025668835","https://openalex.org/W2040860090","https://openalex.org/W2069157810","https://openalex.org/W2081098704","https://openalex.org/W2082874501","https://openalex.org/W2086928685","https://openalex.org/W2104655345","https://openalex.org/W2126132608","https://openalex.org/W2126536832","https://openalex.org/W2132709248","https://openalex.org/W2134185611","https://openalex.org/W2145889895","https://openalex.org/W2148819930","https://openalex.org/W2149991291","https://openalex.org/W2159675211","https://openalex.org/W2175715045"],"related_works":["https://openalex.org/W201739634","https://openalex.org/W2158714033","https://openalex.org/W78967844","https://openalex.org/W3213185671","https://openalex.org/W4210989272","https://openalex.org/W4206945140","https://openalex.org/W4386628104","https://openalex.org/W2509687359","https://openalex.org/W4212865750","https://openalex.org/W2362023034"],"abstract_inverted_index":{"BACKGROUND:":[0],"Network":[1],"representations":[2,172,264,278],"of":[3,11,50,68,77,130,151,159,173,215,228,240,254,279,288,300],"cell-biological":[4],"signaling":[5],"processes":[6],"frequently":[7],"contain":[8],"large":[9],"numbers":[10],"interacting":[12,70],"molecular":[13,280,322],"and":[14,21,36,61,91,134,176,219,243,284,324],"multi-molecular":[15],"components":[16,51],"that":[17,124,165,189,267,343,348],"can":[18,223,344],"exist":[19],"in,":[20],"switch":[22],"between,":[23],"multiple":[24],"biochemical":[25,167,289],"and/or":[26,132],"structural":[27],"states.":[28],"In":[29,308],"addition,":[30],"the":[31,66,69,75,112,148,152,157,162,177,181,186,194,198,213,229,244,305,309,314,329],"interaction":[32,93],"categories":[33,123],"(associations,":[34],"dissociations":[35],"transformations)":[37],"in":[38,286,304],"such":[39,57,337],"networks":[40,169,302],"cannot":[41],"satisfactorily":[42],"be":[43,257,333,345],"mapped":[44],"onto":[45],"simple":[46,274],"arrows":[47],"connecting":[48],"pairs":[49],"since":[52],"their":[53,282,325],"specifications":[54,271],"involve":[55],"information":[56,113,255],"as":[58,327],"reaction":[59,118,168,246,301],"rates":[60],"conditions":[62,178,283],"with":[63,99,197,261],"regard":[64],"to":[65,74,79,115,139,143,192,259,335,347],"states":[67],"components.":[71],"This":[72,105,201,251],"leads":[73],"challenge":[76],"having":[78],"reconcile":[80],"competing":[81],"objectives:":[82],"providing":[83],"a":[84,117,206],"high-level":[85],"overview":[86,226],"without":[87,272],"omitting":[88],"relevant":[89],"information,":[90],"showing":[92],"specifics":[94],"while":[95],"not":[96,203],"overwhelming":[97],"users":[98],"too":[100],"much":[101],"detail":[102],"displayed":[103],"simultaneously.":[104],"problem":[106],"is":[107],"typically":[108],"addressed":[109],"by":[110,312],"splitting":[111],"required":[114],"understand":[116],"network":[119,231,263],"model":[120,196,208,270,342],"into":[121,147],"several":[122,141],"are":[125],"rendered":[126],"separately":[127],"through":[128],"combinations":[129],"visualizations":[131,299],"textual":[133],"tabular":[135],"elements,":[136],"requiring":[137],"modelers":[138],"consult":[140],"sources":[142],"obtain":[144],"comprehensive":[145,298],"insights":[146],"underlying":[149,195,245],"assumptions":[150],"model.":[153],"RESULTS:":[154],"We":[155],"report":[156],"development":[158],"an":[160,225],"application,":[161],"Simmune":[163,199,293,306],"NetworkViewer,":[164],"visualizes":[166],"using":[170,185],"iconographic":[171],"protein":[174],"interactions":[175,182,326],"under":[179],"which":[180],"take":[183],"place":[184],"same":[187],"symbols":[188],"were":[190],"used":[191],"specify":[193],"Modeler.":[200],"approach":[202],"only":[204],"provides":[205,295],"coherent":[207],"representation":[209],"but,":[210],"moreover,":[211,332],"following":[212],"principle":[214],"\"overview":[216],"first,":[217],"zoom":[218],"filter,":[220],"then":[221],"details-on-demand,\"":[222],"generate":[224],"visualization":[227,338],"global":[230],"and,":[232],"upon":[233],"user":[234],"request,":[235],"presents":[236],"more":[237],"detailed":[238,276],"views":[239],"local":[241],"sub-networks":[242],"rules":[247],"for":[248,318,339],"selected":[249],"interactions.":[250],"visual":[252],"integration":[253],"would":[256],"difficult":[258],"achieve":[260],"static":[262],"or":[265],"approaches":[266],"use":[268],"scripted":[269],"offering":[273],"but":[275],"symbolic":[277],"interactions,":[281],"consequences":[285],"terms":[287],"modifications.":[290],"CONCLUSIONS:":[291],"The":[292],"NetworkViewer":[294,330],"concise,":[296],"yet":[297],"created":[303],"framework.":[307],"near":[310],"future,":[311],"adopting":[313],"upcoming":[315],"SBML":[316],"standard":[317],"encoding":[319],"multi-component,":[320],"multi-state":[321],"complexes":[323],"input,":[328],"will,":[331],"able":[334],"offer":[336],"any":[340],"rule-based":[341],"exported":[346],"standard.":[349]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
