{"id":"https://openalex.org/W2142010163","doi":"https://doi.org/10.1186/1752-0509-8-40","title":"NatalieQ: A web server for protein-protein interaction network querying","display_name":"NatalieQ: A web server for protein-protein interaction network querying","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2142010163","doi":"https://doi.org/10.1186/1752-0509-8-40","mag":"2142010163","pmid":"https://pubmed.ncbi.nlm.nih.gov/24690407"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-8-40","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-40","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-40","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-40","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089040838","display_name":"Mohammed El-Kebir","orcid":"https://orcid.org/0000-0002-1468-2407"},"institutions":[{"id":"https://openalex.org/I1341640284","display_name":"Centrum Wiskunde & Informatica","ror":"https://ror.org/00x7ekv49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1341640284","https://openalex.org/I2800991832"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Mohammed El-Kebir","raw_affiliation_strings":["Life Sciences, Centrum Wiskunde & Informatica, Science Park 123, 1098 XG Amsterdam, the Netherlands. m.el-kebir@cwi.nl","Life Sciences, Centrum Wiskunde & Informatica, Science Park 123, 1098, XG Amsterdam, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Life Sciences, Centrum Wiskunde & Informatica, Science Park 123, 1098 XG Amsterdam, the Netherlands. m.el-kebir@cwi.nl","institution_ids":[]},{"raw_affiliation_string":"Life Sciences, Centrum Wiskunde & Informatica, Science Park 123, 1098, XG Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I1341640284"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074330888","display_name":"Bernd W. Brandt","orcid":"https://orcid.org/0000-0002-1155-1989"},"institutions":[{"id":"https://openalex.org/I2898155008","display_name":"Academic Center for Dentistry Amsterdam","ror":"https://ror.org/04x5wnb75","country_code":"NL","type":"education","lineage":["https://openalex.org/I2898155008"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Bernd W Brandt","raw_affiliation_strings":["Department of Preventive Dentistry, Academic Centre for Dentistry Amsterdam (ACTA), University of Amsterdam and VU University Amsterdam, Amsterdam, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Preventive Dentistry, Academic Centre for Dentistry Amsterdam (ACTA), University of Amsterdam and VU University Amsterdam, Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I2898155008","https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108522619","display_name":"Jaap Heringa","orcid":null},"institutions":[{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jaap Heringa","raw_affiliation_strings":["Amsterdam Institute for Molecules, Medicines and Systems (AIMMS), Amsterdam, the Netherlands","Centre for Integrative Bioinformatics VU (IBIVU), VU University Amsterdam, De Boelelaan 1081A, 1081, HV Amsterdam, the Netherlands","Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525, GA Nijmegen, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Amsterdam Institute for Molecules, Medicines and Systems (AIMMS), Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Centre for Integrative Bioinformatics VU (IBIVU), VU University Amsterdam, De Boelelaan 1081A, 1081, HV Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525, GA Nijmegen, the Netherlands","institution_ids":["https://openalex.org/I2801582894"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029642674","display_name":"Gunnar W. Klau","orcid":"https://orcid.org/0000-0002-6340-0090"},"institutions":[{"id":"https://openalex.org/I1341640284","display_name":"Centrum Wiskunde & Informatica","ror":"https://ror.org/00x7ekv49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1341640284","https://openalex.org/I2800991832"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Gunnar W Klau","raw_affiliation_strings":["Amsterdam Institute for Molecules, Medicines and Systems (AIMMS), Amsterdam, the Netherlands","Centre for Integrative Bioinformatics VU (IBIVU), VU University Amsterdam, De Boelelaan 1081A, 1081, HV Amsterdam, the Netherlands","Life Sciences, Centrum Wiskunde & Informatica, Science Park 123, 1098, XG Amsterdam, the Netherlands","Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525, GA Nijmegen, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Amsterdam Institute for Molecules, Medicines and Systems (AIMMS), Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I887064364"]},{"raw_affiliation_string":"Centre for Integrative Bioinformatics VU (IBIVU), VU University Amsterdam, De Boelelaan 1081A, 1081, HV Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"Life Sciences, Centrum Wiskunde & Informatica, Science Park 123, 1098, XG Amsterdam, the Netherlands","institution_ids":["https://openalex.org/I1341640284"]},{"raw_affiliation_string":"Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525, GA Nijmegen, the Netherlands","institution_ids":["https://openalex.org/I2801582894"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5089040838"],"corresponding_institution_ids":["https://openalex.org/I1341640284"],"apc_list":null,"apc_paid":null,"fwci":0.713,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.70940621,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"8","issue":"1","first_page":"40","last_page":"40"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7570438981056213},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6267015337944031},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6194402575492859},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5699900984764099},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5497631430625916},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.539238452911377},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5316935777664185},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5095265507698059},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5079653859138489},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.44572579860687256},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.43823105096817017},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.41516512632369995},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39269521832466125},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.38326117396354675},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3486349582672119},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25624847412109375},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24934262037277222},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.24238020181655884},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.19311988353729248},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1834983229637146},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1295250654220581},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10480961203575134},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.10458338260650635}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7570438981056213},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6267015337944031},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6194402575492859},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5699900984764099},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5497631430625916},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.539238452911377},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5316935777664185},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5095265507698059},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5079653859138489},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.44572579860687256},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.43823105096817017},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.41516512632369995},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39269521832466125},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.38326117396354675},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3486349582672119},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25624847412109375},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24934262037277222},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.24238020181655884},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.19311988353729248},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1834983229637146},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1295250654220581},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10480961203575134},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.10458338260650635},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060449","descriptor_name":"Wnt Signaling Pathway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1186/1752-0509-8-40","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-40","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-40","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24690407","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24690407","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:research.vu.nl:openaire_cris_publications/705b47af-7c90-49ba-b273-d38177518704","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/705b47af-7c90-49ba-b273-d38177518704","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"El-Kebir, M, Brandt, B W, Heringa, J & Klau, G W 2014, 'NatalieQ: a web server for protein-protein interaction network querying', BMC Systems Biology, vol. 8, no. 40, pp. 1-7. https://doi.org/10.1186/1752-0509-8-40","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:dare.uva.nl:openaire/22b42cb1-6be4-41b1-8992-9f541ce58b7d","is_oa":true,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/natalieq-a-web-server-for-proteinprotein-interaction-network-querying(22b42cb1-6be4-41b1-8992-9f541ce58b7d).html","pdf_url":"https://pure.uva.nl/ws/files/2132715/147870_429319.pdf","source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"El-Kebir, M, Brandt, B W, Heringa, J & Klau, G W 2014, 'NatalieQ: A web server for protein-protein interaction network querying', BMC Systems Biology, vol. 8, pp. 40. https://doi.org/10.1186/1752-0509-8-40","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:cwi.nl:22982","is_oa":true,"landing_page_url":"https://ir.cwi.nl/pub/22982","pdf_url":"https://ir.cwi.nl/pub/22982/22982D.pdf","source":{"id":"https://openalex.org/S7407055335","display_name":"Centrum Wiskunde & Informatica (CWI), the national research institute for mathematics and computer science in the Netherlands","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology vol. 8 no. 40","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:uvapub:oai:dare.uva.nl:publications/22b42cb1-6be4-41b1-8992-9f541ce58b7d","is_oa":true,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/natalieq-a-web-server-for-proteinprotein-interaction-network-querying(22b42cb1-6be4-41b1-8992-9f541ce58b7d).html","pdf_url":"https://dare.uva.nl/personal/pure/en/publications/natalieq-a-web-server-for-proteinprotein-interaction-network-querying(22b42cb1-6be4-41b1-8992-9f541ce58b7d).html","source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 8. BioMed Central","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dare.uva.nl:publications/22b42cb1-6be4-41b1-8992-9f541ce58b7d","is_oa":false,"landing_page_url":"http://dare.uva.nl/personal/pure/en/publications/natalieq-a-web-server-for-proteinprotein-interaction-network-querying(22b42cb1-6be4-41b1-8992-9f541ce58b7d).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:2991666","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3998945","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3998945","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3998945","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"},{"id":"pmh:vu:oai:research.vu.nl:publications/76d7fbbc-a35a-4a23-9e6b-b8ce6f6900ad","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/76d7fbbc-a35a-4a23-9e6b-b8ce6f6900ad","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Systems Biology, 8. BioMed Central","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-8-40","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-40","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-40","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321008","display_name":"Universiteit van Amsterdam","ror":"https://ror.org/04dkp9463"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142010163.pdf","grobid_xml":"https://content.openalex.org/works/W2142010163.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1533396222","https://openalex.org/W2010057808","https://openalex.org/W2035036132","https://openalex.org/W2055043387","https://openalex.org/W2096525273","https://openalex.org/W2105924489","https://openalex.org/W2107427454","https://openalex.org/W2116398954","https://openalex.org/W2155142785","https://openalex.org/W2158714788","https://openalex.org/W2165253681","https://openalex.org/W2167139431","https://openalex.org/W2167222948","https://openalex.org/W4245543257","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2800059693","https://openalex.org/W1987705964","https://openalex.org/W2099913238","https://openalex.org/W2414873431","https://openalex.org/W4377086792","https://openalex.org/W2949751838","https://openalex.org/W2145100112","https://openalex.org/W4384303460","https://openalex.org/W2137238644","https://openalex.org/W1990200948"],"abstract_inverted_index":{"We":[0,18],"show":[1],"that":[2,21],"topology-based":[3],"network":[4],"alignment":[5],"can":[6],"produce":[7],"results":[8],"complementary":[9],"to":[10,25],"those":[11],"obtained":[12],"by":[13],"using":[14],"sequence":[15],"similarity":[16],"alone.":[17],"also":[19],"demonstrate":[20],"NatalieQ":[22],"is":[23,31],"able":[24],"predict":[26],"putative":[27],"interactions.":[28],"The":[29],"server":[30],"available":[32],"at:":[33],"http://www.ibi.vu.nl/programs/natalieq/.":[34]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
