{"id":"https://openalex.org/W2111805188","doi":"https://doi.org/10.1186/1752-0509-8-35","title":"Improving protein function prediction using domain and protein complexes in PPI networks","display_name":"Improving protein function prediction using domain and protein complexes in PPI networks","publication_year":2014,"publication_date":"2014-03-24","ids":{"openalex":"https://openalex.org/W2111805188","doi":"https://doi.org/10.1186/1752-0509-8-35","mag":"2111805188","pmid":"https://pubmed.ncbi.nlm.nih.gov/24655481"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-8-35","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-35","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-35","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-35","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053073532","display_name":"Wei Peng","orcid":"https://orcid.org/0000-0002-9572-951X"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]},{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Peng","raw_affiliation_strings":["Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, Yunnan, 650093, PR China","School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China","School of Information Science and Engineering, Central South University, Changsha, PR China","Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, Yunnan, 650093, PR China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, PR China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, PR China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan 410083, PR China. jxwang@mail.csu.edu.cn","School of Information Science and Engineering, Central South University, Changsha, PR China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan 410083, PR China. jxwang@mail.csu.edu.cn","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, PR China#TAB#","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028050807","display_name":"Juan Cai","orcid":"https://orcid.org/0000-0002-6711-4016"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Cai","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China","School of Information Science and Engineering, Central South University, Changsha, PR China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, PR China#TAB#","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100432080","display_name":"Lu Chen","orcid":"https://orcid.org/0000-0002-3385-9335"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lu Chen","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China","School of Information Science and Engineering, Central South University, Changsha, PR China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, PR China#TAB#","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China","School of Information Science and Engineering, Central South University, Changsha, PR China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, PR China#TAB#","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, S7N 5A9, Canada","School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China","School of Information Science and Engineering, Central South University, Changsha, PR China","Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, S7N 5A9, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, PR China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100438360"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":2.4695,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.8978771,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"8","issue":"1","first_page":"35","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9337999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9337999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.02280000038444996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.01979999989271164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.7417368292808533},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6844899654388428},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6359544396400452},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.620039165019989},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6184820532798767},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5958545207977295},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.574316680431366},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5632587671279907},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5063456296920776},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.4954622983932495},{"id":"https://openalex.org/keywords/structural-similarity","display_name":"Structural similarity","score":0.476187139749527},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4609539806842804},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.43362003564834595},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4282635450363159},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3763616681098938},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34648558497428894},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3316107988357544},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3308914601802826},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15568873286247253},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14615017175674438},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13953176140785217}],"concepts":[{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.7417368292808533},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6844899654388428},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6359544396400452},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.620039165019989},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6184820532798767},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5958545207977295},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.574316680431366},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5632587671279907},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5063456296920776},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.4954622983932495},{"id":"https://openalex.org/C139489369","wikidata":"https://www.wikidata.org/wiki/Q770846","display_name":"Structural similarity","level":2,"score":0.476187139749527},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4609539806842804},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.43362003564834595},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4282635450363159},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3763616681098938},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34648558497428894},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3316107988357544},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3308914601802826},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15568873286247253},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14615017175674438},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13953176140785217},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1186/1752-0509-8-35","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-35","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-35","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24655481","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24655481","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2988920","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3994332","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-8-35","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-35","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-35","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G771769968","display_name":"\u57fa\u4e8e\u7f51\u7edc\u6c34\u5e73\u7684\u5173\u952e\u86cb\u767d\u8d28\u8bc6\u522b\u65b9\u6cd5\u53ca\u5176\u5e94\u7528\u7814\u7a76","funder_award_id":"61370024","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8223640893","display_name":null,"funder_award_id":"61232001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8478685728","display_name":null,"funder_award_id":"61379108","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111805188.pdf","grobid_xml":"https://content.openalex.org/works/W2111805188.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W50037818","https://openalex.org/W1485582261","https://openalex.org/W1486817521","https://openalex.org/W1558365920","https://openalex.org/W1709660540","https://openalex.org/W1985723382","https://openalex.org/W1986214964","https://openalex.org/W1994025789","https://openalex.org/W2004251312","https://openalex.org/W2007245700","https://openalex.org/W2011986160","https://openalex.org/W2042210880","https://openalex.org/W2076620247","https://openalex.org/W2082565035","https://openalex.org/W2090422756","https://openalex.org/W2090766471","https://openalex.org/W2092165279","https://openalex.org/W2097282516","https://openalex.org/W2103017472","https://openalex.org/W2107067224","https://openalex.org/W2107710781","https://openalex.org/W2112657663","https://openalex.org/W2113553645","https://openalex.org/W2117486996","https://openalex.org/W2119359534","https://openalex.org/W2122576958","https://openalex.org/W2125179362","https://openalex.org/W2125725297","https://openalex.org/W2128104809","https://openalex.org/W2131407941","https://openalex.org/W2136850043","https://openalex.org/W2137786672","https://openalex.org/W2140462113","https://openalex.org/W2141885858","https://openalex.org/W2144494426","https://openalex.org/W2144810924","https://openalex.org/W2146447390","https://openalex.org/W2148722247","https://openalex.org/W2155320925","https://openalex.org/W2158266097","https://openalex.org/W2158714788","https://openalex.org/W2163485494","https://openalex.org/W2164928285","https://openalex.org/W2166468869","https://openalex.org/W2170630035","https://openalex.org/W2171403830","https://openalex.org/W4210400672","https://openalex.org/W4236956086","https://openalex.org/W4254486287"],"related_works":["https://openalex.org/W2586268529","https://openalex.org/W2952660917","https://openalex.org/W2287132924","https://openalex.org/W2125650596","https://openalex.org/W2131456688","https://openalex.org/W2154613611","https://openalex.org/W2111805188","https://openalex.org/W1981267648","https://openalex.org/W33421173","https://openalex.org/W2131407941"],"abstract_inverted_index":{"BACKGROUND:":[0],"Characterization":[1],"of":[2,10,48,85,99,110,117,132,136,142,160,183,203],"unknown":[3,143],"proteins":[4,87,119,144,185],"through":[5],"computational":[6,30],"approaches":[7],"is":[8,75,93,177,189],"one":[9,74],"the":[11,46,62,82,105,114,121,133,154,158,169,184,187,212],"most":[12],"challenging":[13],"problems":[14],"in":[15,45,97,164,186],"silico":[16],"biology,":[17],"which":[18,37,80,103],"has":[19],"attracted":[20],"world-wide":[21],"interests":[22],"and":[23,70,88,120,191,195,220],"great":[24],"efforts.":[25],"There":[26],"have":[27,156],"been":[28],"some":[29],"methods":[31,163],"proposed":[32,59,162],"to":[33,139],"address":[34],"this":[35,54],"problem,":[36],"are":[38,58,128],"either":[39],"based":[40],"on":[41,130],"homology":[42],"mapping":[43],"or":[44],"context":[47,98],"protein":[49,71,100,106,165,205,221],"interaction":[50,64,214],"networks.":[51],"RESULTS:":[52],"In":[53],"paper,":[55],"two":[56],"algorithms":[57,127],"by":[60,112,210],"integrating":[61,211],"protein-protein":[63,213],"(PPI)":[65,215],"network,":[66,216],"proteins'":[67,217],"domain":[68,76,83,94,115,218],"information":[69,219],"complexes.":[72,222],"The":[73,91,125,201],"combination":[77,95],"similarity":[78,96,108],"(DCS),":[79],"combines":[81],"compositions":[84,116],"both":[86,118],"their":[89],"neighbors.":[90],"other":[92,150,196],"complexes":[101,122],"(DSCP),":[102],"extends":[104],"functional":[107],"definition":[109],"DCS":[111,194],"combining":[113],"including":[123],"them.":[124],"new":[126],"tested":[129],"networks":[131],"model":[134],"species":[135],"Saccharomyces":[137],"cerevisiae":[138],"predict":[140],"functions":[141],"using":[145,172],"cross":[146],"validations.":[147],"Comparing":[148],"with":[149],"several":[151,197],"existing":[152,198],"algorithms,":[153],"results":[155],"demonstrated":[157],"effectiveness":[159],"our":[161],"function":[166,206],"prediction.":[167],"Furthermore,":[168],"algorithm":[170],"DSCP":[171],"experimental":[173],"determined":[174],"complex":[175],"data":[176],"robust":[178],"when":[179],"a":[180],"large":[181],"percentage":[182],"network":[188],"unknown,":[190],"it":[192],"outperforms":[193],"algorithms.":[199],"CONCLUSIONS:":[200],"accuracy":[202],"predicting":[204],"can":[207],"be":[208],"improved":[209]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-25T15:57:00.446498","created_date":"2025-10-10T00:00:00"}
