{"id":"https://openalex.org/W2100228443","doi":"https://doi.org/10.1186/1752-0509-8-24","title":"Computational prediction of the human-microbial oral interactome","display_name":"Computational prediction of the human-microbial oral interactome","publication_year":2014,"publication_date":"2014-02-27","ids":{"openalex":"https://openalex.org/W2100228443","doi":"https://doi.org/10.1186/1752-0509-8-24","mag":"2100228443","pmid":"https://pubmed.ncbi.nlm.nih.gov/24576332"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-8-24","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-24","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-24","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-24","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036745591","display_name":"Edgar D. Coelho","orcid":null},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Edgar D Coelho","raw_affiliation_strings":["Department of Electronics, Telecommunications and Informatics (DETI), Institute of Electronics and Telematics Engineering of Aveiro (IEETA), University of Aveiro, Aveiro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics, Telecommunications and Informatics (DETI), Institute of Electronics and Telematics Engineering of Aveiro (IEETA), University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043572862","display_name":"Joel P. Arrais","orcid":"https://orcid.org/0000-0003-4937-2334"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Joel P Arrais","raw_affiliation_strings":["Department of Informatics Engineering (DEI), University of Coimbra, Coimbra, Portugal. jpa@dei.uc.pt","Department of Informatics Engineering (DEI), University of Coimbra, Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics Engineering (DEI), University of Coimbra, Coimbra, Portugal. jpa@dei.uc.pt","institution_ids":[]},{"raw_affiliation_string":"Department of Informatics Engineering (DEI), University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073280030","display_name":"S\u00e9rgio Matos","orcid":"https://orcid.org/0000-0003-1941-3983"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"S\u00e9rgio Matos","raw_affiliation_strings":["Department of Electronics, Telecommunications and Informatics (DETI), Institute of Electronics and Telematics Engineering of Aveiro (IEETA), University of Aveiro, Aveiro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics, Telecommunications and Informatics (DETI), Institute of Electronics and Telematics Engineering of Aveiro (IEETA), University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086747532","display_name":"Carlos Pereira","orcid":"https://orcid.org/0000-0002-2393-0628"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]},{"id":"https://openalex.org/I293362453","display_name":"Polytechnic Institute of Coimbra","ror":"https://ror.org/01n8x4993","country_code":"PT","type":"education","lineage":["https://openalex.org/I293362453"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Carlos Pereira","raw_affiliation_strings":["Centre for Informatics and Systems of the University at Coimbra (CISUC), University of Coimbra, Coimbra, Portugal","Department of Informatics Engineering and Systems, Polytechnic Institute of Coimbra, Engineering Institute of Coimbra (IPC-ISEC), Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Informatics and Systems of the University at Coimbra (CISUC), University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]},{"raw_affiliation_string":"Department of Informatics Engineering and Systems, Polytechnic Institute of Coimbra, Engineering Institute of Coimbra (IPC-ISEC), Coimbra, Portugal","institution_ids":["https://openalex.org/I293362453"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025336228","display_name":"Nuno Rosa","orcid":"https://orcid.org/0000-0003-4604-0780"},"institutions":[{"id":"https://openalex.org/I25169866","display_name":"Universidade Cat\u00f3lica Portuguesa","ror":"https://ror.org/03b9snr86","country_code":"PT","type":"education","lineage":["https://openalex.org/I25169866"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Nuno Rosa","raw_affiliation_strings":["Department of Health Sciences, Institute of Health Sciences, The Catholic University of Portugal, Viseu, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences, Institute of Health Sciences, The Catholic University of Portugal, Viseu, Portugal","institution_ids":["https://openalex.org/I25169866"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037861687","display_name":"Maria Jos\u00e9 Correia","orcid":"https://orcid.org/0000-0002-6141-9089"},"institutions":[{"id":"https://openalex.org/I25169866","display_name":"Universidade Cat\u00f3lica Portuguesa","ror":"https://ror.org/03b9snr86","country_code":"PT","type":"education","lineage":["https://openalex.org/I25169866"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Maria Jos\u00e9 Correia","raw_affiliation_strings":["Department of Health Sciences, Institute of Health Sciences, The Catholic University of Portugal, Viseu, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences, Institute of Health Sciences, The Catholic University of Portugal, Viseu, Portugal","institution_ids":["https://openalex.org/I25169866"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049602650","display_name":"Marlene Barros","orcid":"https://orcid.org/0000-0003-0631-4062"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]},{"id":"https://openalex.org/I25169866","display_name":"Universidade Cat\u00f3lica Portuguesa","ror":"https://ror.org/03b9snr86","country_code":"PT","type":"education","lineage":["https://openalex.org/I25169866"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Marlene Barros","raw_affiliation_strings":["Centre for Neurosciences and Cell Biology, University of Coimbra, Coimbra, Portugal","Department of Health Sciences, Institute of Health Sciences, The Catholic University of Portugal, Viseu, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Neurosciences and Cell Biology, University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]},{"raw_affiliation_string":"Department of Health Sciences, Institute of Health Sciences, The Catholic University of Portugal, Viseu, Portugal","institution_ids":["https://openalex.org/I25169866"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040524956","display_name":"Jos\u00e9 Lu\u00eds Oliveira","orcid":"https://orcid.org/0000-0002-6672-6176"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Lu\u00eds Oliveira","raw_affiliation_strings":["Department of Electronics, Telecommunications and Informatics (DETI), Institute of Electronics and Telematics Engineering of Aveiro (IEETA), University of Aveiro, Aveiro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics, Telecommunications and Informatics (DETI), Institute of Electronics and Telematics Engineering of Aveiro (IEETA), University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5043572862"],"corresponding_institution_ids":["https://openalex.org/I76903346"],"apc_list":null,"apc_paid":null,"fwci":1.9919,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.86484365,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"24","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7278000116348267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7278000116348267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.1005999967455864,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.03620000183582306,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.8316141366958618},{"id":"https://openalex.org/keywords/naive-bayes-classifier","display_name":"Naive Bayes classifier","score":0.5916785001754761},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5492758750915527},{"id":"https://openalex.org/keywords/oral-cavity","display_name":"Oral cavity","score":0.5169012546539307},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4972415268421173},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.48929354548454285},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.48667722940444946},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.45323941111564636},{"id":"https://openalex.org/keywords/area-under-curve","display_name":"Area under curve","score":0.4394642412662506},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43857643008232117},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4177156090736389},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35737040638923645},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3307725787162781},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31110137701034546},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.29156219959259033},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.1521957814693451},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1313474178314209},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1285003125667572}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.8316141366958618},{"id":"https://openalex.org/C52001869","wikidata":"https://www.wikidata.org/wiki/Q812530","display_name":"Naive Bayes classifier","level":3,"score":0.5916785001754761},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5492758750915527},{"id":"https://openalex.org/C2986629439","wikidata":"https://www.wikidata.org/wiki/Q9635","display_name":"Oral cavity","level":2,"score":0.5169012546539307},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4972415268421173},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48929354548454285},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.48667722940444946},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.45323941111564636},{"id":"https://openalex.org/C3020225094","wikidata":"https://www.wikidata.org/wiki/Q80091","display_name":"Area under curve","level":3,"score":0.4394642412662506},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43857643008232117},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4177156090736389},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35737040638923645},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3307725787162781},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31110137701034546},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.29156219959259033},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.1521957814693451},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1313474178314209},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1285003125667572},{"id":"https://openalex.org/C29694066","wikidata":"https://www.wikidata.org/wiki/Q118301","display_name":"Orthodontics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C112705442","wikidata":"https://www.wikidata.org/wiki/Q323936","display_name":"Pharmacokinetics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1752-0509-8-24","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-24","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-24","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24576332","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24576332","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:estudogeral.uc.pt:10316/109376","is_oa":true,"landing_page_url":"http://hdl.handle.net/10316/109376","pdf_url":null,"source":{"id":"https://openalex.org/S4306402070","display_name":"Estudo Geral (Universidad de Coimbra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I76903346","host_organization_name":"University of Coimbra","host_organization_lineage":["https://openalex.org/I76903346"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2968443","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3975954","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:repositorio.ucp.pt:10400.14/34264","is_oa":true,"landing_page_url":"http://hdl.handle.net/10400.14/34264","pdf_url":null,"source":{"id":"https://openalex.org/S4306401375","display_name":"Reposit\u00f3rio Institucional da Universidade Cat\u00f3lica Portuguesa (Universidade Cat\u00f3lica Portuguesa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I25169866","host_organization_name":"Universidade Cat\u00f3lica Portuguesa","host_organization_lineage":["https://openalex.org/I25169866"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-8-24","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-24","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-24","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G4517184575","display_name":null,"funder_award_id":"SFRH/BD/86343/2012","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2100228443.pdf","grobid_xml":"https://content.openalex.org/works/W2100228443.grobid-xml"},"referenced_works_count":118,"referenced_works":["https://openalex.org/W1527927437","https://openalex.org/W1575542444","https://openalex.org/W1622871881","https://openalex.org/W1647597862","https://openalex.org/W1817561967","https://openalex.org/W1884509322","https://openalex.org/W1918391659","https://openalex.org/W1963916671","https://openalex.org/W1967408543","https://openalex.org/W1972368286","https://openalex.org/W1973634147","https://openalex.org/W1974085949","https://openalex.org/W1981307375","https://openalex.org/W1982267716","https://openalex.org/W1986599407","https://openalex.org/W1987546980","https://openalex.org/W1988080713","https://openalex.org/W1989034333","https://openalex.org/W1990453950","https://openalex.org/W1990748933","https://openalex.org/W1994803330","https://openalex.org/W1995117714","https://openalex.org/W2002400720","https://openalex.org/W2002771805","https://openalex.org/W2003079893","https://openalex.org/W2004813035","https://openalex.org/W2009533642","https://openalex.org/W2009966494","https://openalex.org/W2013414898","https://openalex.org/W2015410041","https://openalex.org/W2020460643","https://openalex.org/W2021449313","https://openalex.org/W2030985660","https://openalex.org/W2032590709","https://openalex.org/W2037744310","https://openalex.org/W2039063819","https://openalex.org/W2042301222","https://openalex.org/W2042500831","https://openalex.org/W2044837620","https://openalex.org/W2045131140","https://openalex.org/W2047990563","https://openalex.org/W2057545775","https://openalex.org/W2057885377","https://openalex.org/W2059164137","https://openalex.org/W2065304353","https://openalex.org/W2065806863","https://openalex.org/W2065963191","https://openalex.org/W2070360032","https://openalex.org/W2070887174","https://openalex.org/W2073677183","https://openalex.org/W2077398039","https://openalex.org/W2077550665","https://openalex.org/W2080922074","https://openalex.org/W2083978969","https://openalex.org/W2084134149","https://openalex.org/W2085963663","https://openalex.org/W2086595847","https://openalex.org/W2086924215","https://openalex.org/W2089759326","https://openalex.org/W2095376192","https://openalex.org/W2095867585","https://openalex.org/W2098013039","https://openalex.org/W2099426927","https://openalex.org/W2099862356","https://openalex.org/W2100827857","https://openalex.org/W2101750553","https://openalex.org/W2101863315","https://openalex.org/W2101957389","https://openalex.org/W2107340752","https://openalex.org/W2107424557","https://openalex.org/W2109715166","https://openalex.org/W2116089841","https://openalex.org/W2116398954","https://openalex.org/W2117403572","https://openalex.org/W2122836610","https://openalex.org/W2122863289","https://openalex.org/W2124112137","https://openalex.org/W2127073167","https://openalex.org/W2127223440","https://openalex.org/W2127891436","https://openalex.org/W2128769815","https://openalex.org/W2130687290","https://openalex.org/W2130790725","https://openalex.org/W2130832525","https://openalex.org/W2133138357","https://openalex.org/W2134197776","https://openalex.org/W2136957665","https://openalex.org/W2139814514","https://openalex.org/W2142510328","https://openalex.org/W2143720865","https://openalex.org/W2144810256","https://openalex.org/W2145427519","https://openalex.org/W2146312020","https://openalex.org/W2147068690","https://openalex.org/W2148667109","https://openalex.org/W2149931676","https://openalex.org/W2150452800","https://openalex.org/W2150926065","https://openalex.org/W2152705149","https://openalex.org/W2157346087","https://openalex.org/W2157825442","https://openalex.org/W2159126118","https://openalex.org/W2160223331","https://openalex.org/W2161153023","https://openalex.org/W2161701113","https://openalex.org/W2163485494","https://openalex.org/W2163493367","https://openalex.org/W2164197494","https://openalex.org/W2164304411","https://openalex.org/W2165253681","https://openalex.org/W2167869241","https://openalex.org/W2170060106","https://openalex.org/W2749679400","https://openalex.org/W3017143921","https://openalex.org/W4233334497","https://openalex.org/W4233751197","https://openalex.org/W4252706339","https://openalex.org/W4254712992"],"related_works":["https://openalex.org/W4292634579","https://openalex.org/W2964314049","https://openalex.org/W2022326234","https://openalex.org/W4388694323","https://openalex.org/W3215098729","https://openalex.org/W1531941329","https://openalex.org/W4243081378","https://openalex.org/W3192571205","https://openalex.org/W2986624514","https://openalex.org/W2018631360"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,108,123,259],"oral":[2,32,51,95,251],"cavity":[3,52],"is":[4,43,53,69],"a":[5,14,80,89,137,226],"complex":[6],"ecosystem":[7],"where":[8],"human":[9,106],"chemical":[10],"compounds":[11],"coexist":[12],"with":[13],"particular":[15],"microbiota.":[16],"However,":[17],"shifts":[18],"in":[19,28,246],"the":[20,29,46,50,60,93,142,180,208,211,247,266,270],"normal":[21],"composition":[22],"of":[23,31,49,67,92,136,173,195,228,249],"this":[24,65,238],"microbiota":[25],"may":[26],"result":[27,213],"onset":[30,248],"ailments,":[33],"such":[34],"as":[35,191],"periodontitis":[36],"and":[37,62,125,130,134,168,257,264,269],"dental":[38],"caries.":[39],"In":[40],"addition,":[41],"it":[42],"known":[44],"that":[45,84],"microbial":[47],"colonization":[48],"mediated":[54],"by":[55],"protein-protein":[56],"interactions":[57],"(PPIs)":[58],"between":[59],"host":[61],"microorganisms.":[63],"Nevertheless,":[64],"kind":[66],"PPIs":[68,102,110,220,230],"still":[70],"largely":[71],"undisclosed.":[72],"To":[73],"elucidate":[74],"these":[75],"interactions,":[76],"we":[77,146],"have":[78],"created":[79],"computational":[81],"prediction":[82,144,155,209],"method":[83,175],"allows":[85],"us":[86],"to":[87,113,207,225,231],"obtain":[88],"first":[90],"model":[91],"Human-Microbial":[94],"interactome.":[96],"RESULTS:":[97],"We":[98,236],"collected":[99],"high-quality":[100],"experimental":[101],"from":[103],"five":[104,152],"major":[105],"databases.":[107],"obtained":[109,268],"were":[111,128],"used":[112,131,147,261],"create":[114],"our":[115,120,174,188,205],"positive":[116,124],"dataset":[117,206,239,260],"and,":[118],"indirectly,":[119],"negative":[121,126],"dataset.":[122],"datasets":[127],"merged":[129],"for":[132,216,262],"training":[133,263],"validation":[135],"na\u00efve":[138],"Bayes":[139],"classifier.":[140],"For":[141],"final":[143,272],"model,":[145,210],"an":[148,177,198],"ensemble":[149],"methodology":[150],"combining":[151],"distinct":[153],"PPI":[154],"techniques,":[156],"namely:":[157],"literature":[158],"mining,":[159],"primary":[160,189],"protein":[161],"sequences,":[162],"orthologous":[163],"profiles,":[164],"biological":[165],"process":[166],"similarity,":[167],"domain":[169],"interactions.":[170],"Performance":[171],"evaluation":[172],"revealed":[176],"area":[178],"under":[179],"ROC-curve":[181],"(AUC)":[182],"value":[183],"greater":[184,200],"than":[185,201],"0.926,":[186],"supporting":[187],"hypothesis,":[190],"no":[192],"single":[193],"set":[194,227],"features":[196],"reached":[197],"AUC":[199],"0.877.":[202],"After":[203],"subjecting":[204],"classified":[212],"was":[214],"filtered":[215],"very":[217],"high":[218],"confidence":[219],"(probability":[221],"\u2265":[222],"1-10-7),":[223],"leading":[224],"46,579":[229],"be":[232],"further":[233],"explored.":[234],"CONCLUSIONS:":[235],"believe":[237],"holds":[240],"not":[241],"only":[242],"important":[243],"pathways":[244],"involved":[245],"infectious":[250],"diseases,":[252],"but":[253],"also":[254],"potential":[255],"drug-targets":[256],"biomarkers.":[258],"validation,":[265],"predictions":[267],"network":[271,273],"are":[274],"available":[275],"at":[276],"http://bioinformatics.ua.pt/software/oralint.":[277]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
