{"id":"https://openalex.org/W2132720364","doi":"https://doi.org/10.1186/1752-0509-8-23","title":"Extinction, coexistence, and localized patterns of a bacterial population with contact-dependent inhibition","display_name":"Extinction, coexistence, and localized patterns of a bacterial population with contact-dependent inhibition","publication_year":2014,"publication_date":"2014-02-27","ids":{"openalex":"https://openalex.org/W2132720364","doi":"https://doi.org/10.1186/1752-0509-8-23","mag":"2132720364","pmid":"https://pubmed.ncbi.nlm.nih.gov/24576330"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-8-23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-23","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-23","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-23","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019868556","display_name":"Andrew E. Blanchard","orcid":"https://orcid.org/0000-0001-7330-9656"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrew E Blanchard","raw_affiliation_strings":["Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, 61801, Urbana, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, 61801, Urbana, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050938143","display_name":"Venhar \u00c7elik","orcid":"https://orcid.org/0000-0002-2567-8673"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Venhar Celik","raw_affiliation_strings":["Department of Bioengineering, University of Illinois at Urbana-Champaign, 1304 West Springfield Avenue, Urbana, IL, 61801, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of Illinois at Urbana-Champaign, 1304 West Springfield Avenue, Urbana, IL, 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083272185","display_name":"Ting Lu","orcid":"https://orcid.org/0000-0001-9043-3253"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ting Lu","raw_affiliation_strings":["Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, 61801 Urbana, USA. luting@illinois.edu","Department of Bioengineering, University of Illinois at Urbana-Champaign, 1304 West Springfield Avenue, Urbana, IL, 61801, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, 61801 Urbana, USA. luting@illinois.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Bioengineering, University of Illinois at Urbana-Champaign, 1304 West Springfield Avenue, Urbana, IL, 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5019868556"],"corresponding_institution_ids":["https://openalex.org/I157725225"],"apc_list":null,"apc_paid":null,"fwci":8.4121,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.97139948,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"8","issue":"1","first_page":"23","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.6129999756813049,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.6129999756813049,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11684","display_name":"Vibrio bacteria research studies","score":0.08780000358819962,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10482","display_name":"Mathematical and Theoretical Epidemiology and Ecology Models","score":0.04360000044107437,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/competition","display_name":"Competition (biology)","score":0.8413050770759583},{"id":"https://openalex.org/keywords/extinction","display_name":"Extinction (optical mineralogy)","score":0.7814428806304932},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6944596767425537},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5992185473442078},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.4785933196544647},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.47389522194862366},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.095054030418396}],"concepts":[{"id":"https://openalex.org/C91306197","wikidata":"https://www.wikidata.org/wiki/Q45767","display_name":"Competition (biology)","level":2,"score":0.8413050770759583},{"id":"https://openalex.org/C101991246","wikidata":"https://www.wikidata.org/wiki/Q5422078","display_name":"Extinction (optical mineralogy)","level":2,"score":0.7814428806304932},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6944596767425537},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5992185473442078},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.4785933196544647},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.47389522194862366},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.095054030418396},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D003260","descriptor_name":"Contact Inhibition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003260","descriptor_name":"Contact Inhibition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003260","descriptor_name":"Contact Inhibition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003260","descriptor_name":"Contact Inhibition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053476","descriptor_name":"Extinction, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053476","descriptor_name":"Extinction, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053476","descriptor_name":"Extinction, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053476","descriptor_name":"Extinction, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1752-0509-8-23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-23","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-23","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24576330","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24576330","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2935008","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3942258","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3942258","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3942258","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Syst Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-8-23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-23","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-23","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1002912526","display_name":null,"funder_award_id":"12SDG12090025","funder_id":"https://openalex.org/F4320306230","funder_display_name":"American Heart Association"}],"funders":[{"id":"https://openalex.org/F4320306230","display_name":"American Heart Association","ror":"https://ror.org/013kjyp64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132720364.pdf","grobid_xml":"https://content.openalex.org/works/W2132720364.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1539640572","https://openalex.org/W1547666981","https://openalex.org/W1734689372","https://openalex.org/W1963976531","https://openalex.org/W1966688540","https://openalex.org/W1967663492","https://openalex.org/W1968786866","https://openalex.org/W1970703124","https://openalex.org/W1974927036","https://openalex.org/W1975221762","https://openalex.org/W1980661496","https://openalex.org/W1983455597","https://openalex.org/W1983920923","https://openalex.org/W1984529935","https://openalex.org/W1987378682","https://openalex.org/W1996082438","https://openalex.org/W2011312755","https://openalex.org/W2012258784","https://openalex.org/W2015899817","https://openalex.org/W2018639455","https://openalex.org/W2025219222","https://openalex.org/W2039795337","https://openalex.org/W2040539560","https://openalex.org/W2042658485","https://openalex.org/W2053322374","https://openalex.org/W2055643667","https://openalex.org/W2062575650","https://openalex.org/W2067080329","https://openalex.org/W2076638350","https://openalex.org/W2077742157","https://openalex.org/W2077876954","https://openalex.org/W2081262437","https://openalex.org/W2082189242","https://openalex.org/W2086625254","https://openalex.org/W2087254342","https://openalex.org/W2089076708","https://openalex.org/W2092051148","https://openalex.org/W2094643746","https://openalex.org/W2097647075","https://openalex.org/W2099530148","https://openalex.org/W2101887349","https://openalex.org/W2109363904","https://openalex.org/W2116686857","https://openalex.org/W2122940553","https://openalex.org/W2124419217","https://openalex.org/W2125832470","https://openalex.org/W2129554829","https://openalex.org/W2139482396","https://openalex.org/W2141401164","https://openalex.org/W2142696585","https://openalex.org/W2154961882","https://openalex.org/W2165043209","https://openalex.org/W2166251364","https://openalex.org/W2170120409","https://openalex.org/W2331625639","https://openalex.org/W4235419430","https://openalex.org/W4237997615"],"related_works":["https://openalex.org/W3003614869","https://openalex.org/W1973691824","https://openalex.org/W2587085640","https://openalex.org/W4386071021","https://openalex.org/W2054394682","https://openalex.org/W3089787722","https://openalex.org/W3102854518","https://openalex.org/W1987096743","https://openalex.org/W4394638129","https://openalex.org/W2051141545"],"abstract_inverted_index":{"BACKGROUND:":[0],"Contact-dependent":[1],"inhibition":[2],"(CDI)":[3],"has":[4],"been":[5],"recently":[6],"revealed":[7,215],"as":[8],"an":[9],"intriguing":[10],"but":[11],"ubiquitous":[12],"mechanism":[13],"for":[14,30,74,113,257,293],"bacterial":[15,275,298],"competition":[16,57,62,200,218],"in":[17,111,144,158,180],"which":[18],"a":[19,46,71,75,185,220,258,268,294],"species":[20,104,133],"injects":[21],"toxins":[22],"into":[23],"its":[24,135,254],"competitors":[25],"through":[26],"direct":[27],"physical":[28],"contact":[29],"growth":[31,136,255],"suppression.":[32],"Although":[33],"the":[34,87,96,102,116,120,124,127,131,150,155,182,199,202,217,248,279],"molecular":[35],"and":[36,48,58,80,89,134,164,231,238,253,270,287],"genetic":[37],"aspects":[38],"of":[39,51,78,92,115,130,152,187,201,219,241,251,261,273,281,297],"CDI":[40,53,223,252,285],"systems":[41,54,286],"are":[42,105,244],"being":[43],"increasingly":[44],"explored,":[45],"quantitative":[47],"systematic":[49,269],"picture":[50],"how":[52],"benefit":[55,129,250],"population":[56,76,93,170,175,203,221,262,276],"hence":[59],"alter":[60,149],"corresponding":[61],"outcomes":[63,91],"is":[64,177,204],"not":[65],"well":[66],"elucidated.":[67],"RESULTS:":[68],"By":[69],"constructing":[70],"mathematical":[72],"model":[73],"consisting":[77],"CDI+":[79,132],"CDI-":[81],"species,":[82,118],"we":[83,99,190],"have":[84,214],"systematically":[85],"investigated":[86],"dynamics":[88],"possible":[90],"competition.":[94,153,171],"In":[95,154],"well-mixed":[97],"case,":[98,157],"found":[100],"that":[101,193,216],"two":[103,117,209],"mutually":[106],"exclusive:":[107],"Competition":[108],"always":[109],"results":[110,195],"extinction":[112],"one":[114,207],"with":[119,222],"winner":[121],"determined":[122,246],"by":[123,247],"tradeoff":[125],"between":[126],"competitive":[128,249],"disadvantage":[137,256],"from":[138,169,206],"increased":[139],"metabolic":[140],"burden.":[141],"Initial":[142],"conditions":[143],"certain":[145],"circumstances":[146],"can":[147,224],"also":[148,178],"outcome":[151],"spatial":[156,173],"addition":[159],"to":[160,208],"exclusive":[161],"extinction,":[162,229],"coexistence":[163],"localized":[165,232],"patterns":[166,243],"may":[167],"emerge":[168],"For":[172],"coexistence,":[174,230],"diffusion":[176],"important":[179],"influencing":[181],"outcome.":[183],"Using":[184],"set":[186],"illustrative":[188],"examples,":[189],"further":[191],"showed":[192],"our":[194,282],"hold":[196],"true":[197],"when":[198],"extended":[205],"dimensional":[210],"space.":[211],"CONCLUSIONS:":[212],"We":[213],"produce":[225],"diverse":[226],"patterns,":[227],"including":[228],"aggregation.":[233],"The":[234],"emergence,":[235],"relative":[236],"abundance,":[237],"characteristic":[239],"features":[240],"these":[242],"collectively":[245],"given":[259],"rate":[260],"diffusion.":[263],"Thus,":[264],"this":[265],"study":[266],"provides":[267],"statistical":[271],"view":[272],"CDI-based":[274],"competition,":[277],"expanding":[278],"spectrum":[280],"knowledge":[283],"about":[284],"possibly":[288],"facilitating":[289],"new":[290],"experimental":[291],"tests":[292],"deeper":[295],"understanding":[296],"interactions.":[299]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
