{"id":"https://openalex.org/W2142674442","doi":"https://doi.org/10.1186/1752-0509-8-14","title":"Computational developments in microRNA-regulated protein-protein interactions","display_name":"Computational developments in microRNA-regulated protein-protein interactions","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2142674442","doi":"https://doi.org/10.1186/1752-0509-8-14","mag":"2142674442","pmid":"https://pubmed.ncbi.nlm.nih.gov/24507415"},"language":"en","primary_location":{"id":"doi:10.1186/1752-0509-8-14","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-14","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-14","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-14","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100649020","display_name":"Wei Zhu","orcid":"https://orcid.org/0000-0001-6410-1810"},"institutions":[{"id":"https://openalex.org/I196829312","display_name":"La Trobe University","ror":"https://ror.org/01rxfrp27","country_code":"AU","type":"education","lineage":["https://openalex.org/I196829312"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Wei Zhu","raw_affiliation_strings":["Department of Computer Science and Computer Engineering, La Trobe University, Melbourne, Australia","Department of Computer Science and Computer Engineering; La Trobe University; Melbourne; Australia"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Computer Engineering, La Trobe University, Melbourne, Australia","institution_ids":["https://openalex.org/I196829312"]},{"raw_affiliation_string":"Department of Computer Science and Computer Engineering; La Trobe University; Melbourne; Australia","institution_ids":["https://openalex.org/I196829312"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100728316","display_name":"Yi\u2010Ping Phoebe Chen","orcid":"https://orcid.org/0000-0002-4122-3767"},"institutions":[{"id":"https://openalex.org/I196829312","display_name":"La Trobe University","ror":"https://ror.org/01rxfrp27","country_code":"AU","type":"education","lineage":["https://openalex.org/I196829312"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yi-Ping Chen","raw_affiliation_strings":["Department of Computer Science and Computer Engineering, La Trobe University, Melbourne, Australia. phoebe.chen@latrobe.edu.au","Department of Computer Science and Computer Engineering; La Trobe University; Melbourne; Australia"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Computer Engineering, La Trobe University, Melbourne, Australia. phoebe.chen@latrobe.edu.au","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Computer Engineering; La Trobe University; Melbourne; Australia","institution_ids":["https://openalex.org/I196829312"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100649020"],"corresponding_institution_ids":["https://openalex.org/I196829312"],"apc_list":null,"apc_paid":null,"fwci":0.854,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.73541682,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"8","issue":"1","first_page":"14","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.8742868304252625},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.7228062152862549},{"id":"https://openalex.org/keywords/regulator","display_name":"Regulator","score":0.5897050499916077},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5570891499519348},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.511578381061554},{"id":"https://openalex.org/keywords/living-cell","display_name":"Living cell","score":0.4309435188770294},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.42590951919555664},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.41485071182250977},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34449106454849243},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33249157667160034},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.21520623564720154},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14126163721084595},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1410895586013794}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.8742868304252625},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.7228062152862549},{"id":"https://openalex.org/C6929976","wikidata":"https://www.wikidata.org/wiki/Q3771881","display_name":"Regulator","level":3,"score":0.5897050499916077},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5570891499519348},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.511578381061554},{"id":"https://openalex.org/C2984801823","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Living cell","level":2,"score":0.4309435188770294},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.42590951919555664},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.41485071182250977},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34449106454849243},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33249157667160034},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.21520623564720154},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14126163721084595},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1410895586013794}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1752-0509-8-14","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-14","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-14","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},{"id":"pmid:24507415","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24507415","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC systems biology","raw_type":null},{"id":"pmh:oai:europepmc.org:2905907","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3922185","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1752-0509-8-14","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1752-0509-8-14","pdf_url":"https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-8-14","source":{"id":"https://openalex.org/S92363890","display_name":"BMC Systems Biology","issn_l":"1752-0509","issn":["1752-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Systems Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142674442.pdf","grobid_xml":"https://content.openalex.org/works/W2142674442.grobid-xml"},"referenced_works_count":112,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1486817521","https://openalex.org/W1491989688","https://openalex.org/W1579879095","https://openalex.org/W1644749979","https://openalex.org/W1689468366","https://openalex.org/W1918391659","https://openalex.org/W1958284284","https://openalex.org/W1966077133","https://openalex.org/W1966242275","https://openalex.org/W1967543716","https://openalex.org/W1967925377","https://openalex.org/W1977186059","https://openalex.org/W1978137579","https://openalex.org/W1978337436","https://openalex.org/W1979390153","https://openalex.org/W1982193071","https://openalex.org/W1984783889","https://openalex.org/W1987850686","https://openalex.org/W1988163167","https://openalex.org/W1989568035","https://openalex.org/W1990061381","https://openalex.org/W1993799748","https://openalex.org/W1994900589","https://openalex.org/W1995082021","https://openalex.org/W2001475320","https://openalex.org/W2009787326","https://openalex.org/W2010768245","https://openalex.org/W2012697921","https://openalex.org/W2012852001","https://openalex.org/W2014208702","https://openalex.org/W2017426710","https://openalex.org/W2018295275","https://openalex.org/W2019675483","https://openalex.org/W2023096047","https://openalex.org/W2023833090","https://openalex.org/W2027440694","https://openalex.org/W2030166934","https://openalex.org/W2032766715","https://openalex.org/W2034064412","https://openalex.org/W2037114802","https://openalex.org/W2041185135","https://openalex.org/W2041939140","https://openalex.org/W2044967196","https://openalex.org/W2046314136","https://openalex.org/W2047967134","https://openalex.org/W2050869737","https://openalex.org/W2053835153","https://openalex.org/W2065566217","https://openalex.org/W2067841476","https://openalex.org/W2069795758","https://openalex.org/W2078741101","https://openalex.org/W2083381199","https://openalex.org/W2089647450","https://openalex.org/W2093557716","https://openalex.org/W2094963389","https://openalex.org/W2097079963","https://openalex.org/W2098979213","https://openalex.org/W2100700507","https://openalex.org/W2100932663","https://openalex.org/W2101181377","https://openalex.org/W2103017472","https://openalex.org/W2104901075","https://openalex.org/W2104990671","https://openalex.org/W2105776281","https://openalex.org/W2107961632","https://openalex.org/W2110101814","https://openalex.org/W2110446991","https://openalex.org/W2116075981","https://openalex.org/W2117513900","https://openalex.org/W2120456037","https://openalex.org/W2120794445","https://openalex.org/W2121936213","https://openalex.org/W2123318061","https://openalex.org/W2124035671","https://openalex.org/W2124166542","https://openalex.org/W2124486266","https://openalex.org/W2126949412","https://openalex.org/W2128114769","https://openalex.org/W2130979840","https://openalex.org/W2132582966","https://openalex.org/W2133763262","https://openalex.org/W2138003801","https://openalex.org/W2138664009","https://openalex.org/W2139218243","https://openalex.org/W2140280811","https://openalex.org/W2142791256","https://openalex.org/W2144896290","https://openalex.org/W2146236251","https://openalex.org/W2146642335","https://openalex.org/W2147495091","https://openalex.org/W2147735312","https://openalex.org/W2149785901","https://openalex.org/W2153234291","https://openalex.org/W2154079654","https://openalex.org/W2154085311","https://openalex.org/W2155874171","https://openalex.org/W2156737316","https://openalex.org/W2158011354","https://openalex.org/W2159675211","https://openalex.org/W2161149887","https://openalex.org/W2162916267","https://openalex.org/W2163485494","https://openalex.org/W2166043581","https://openalex.org/W2167867998","https://openalex.org/W2167869241","https://openalex.org/W2170398996","https://openalex.org/W2338808413","https://openalex.org/W2402750151","https://openalex.org/W2566191916","https://openalex.org/W2898172712","https://openalex.org/W3103971085"],"related_works":["https://openalex.org/W2066232588","https://openalex.org/W2744636379","https://openalex.org/W2146108849","https://openalex.org/W1998067601","https://openalex.org/W2169816095","https://openalex.org/W1989319466","https://openalex.org/W2075155461","https://openalex.org/W2010217915","https://openalex.org/W2015534509","https://openalex.org/W2142674442"],"abstract_inverted_index":{"Protein-protein":[0],"interaction":[1],"(PPI)":[2],"is":[3],"one":[4],"of":[5,11,51,84,96],"the":[6,22,37,52,77,82,94],"most":[7],"important":[8],"functional":[9],"components":[10],"a":[12,34,89],"living":[13],"cell.":[14],"Recently,":[15],"researchers":[16],"have":[17],"been":[18,30],"interested":[19],"in":[20,59,81],"investigating":[21],"correlation":[23],"between":[24],"PPI":[25,43,60,79,98,108],"and":[26,100],"microRNA,":[27],"which":[28,86],"has":[29],"found":[31],"to":[32],"be":[33],"regulator":[35],"at":[36],"post-transcriptional":[38],"level.":[39],"Studies":[40],"on":[41,76,105],"miRNA-regulated":[42,78,97,107],"networks":[44,99],"will":[45,63],"not":[46],"only":[47],"facilitate":[48],"an":[49],"understanding":[50],"fine":[53],"tuning":[54],"role":[55],"that":[56],"miRNAs":[57],"play":[58],"networks,":[61],"but":[62],"also":[64],"provide":[65],"potential":[66],"candidates":[67],"for":[68],"tumor":[69],"diagnosis.":[70],"This":[71],"review":[72],"describes":[73],"basic":[74],"studies":[75],"network":[80,109],"way":[83],"bioinformatics":[85],"includes":[87],"constructing":[88],"miRNA-target":[90],"protein":[91],"network,":[92],"describing":[93],"features":[95],"overviewing":[101],"previous":[102],"findings":[103],"based":[104],"analysing":[106],"features.":[110]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
